Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000650

Physical Location & Seq

Genomic Coordinates Forward (+)

7964553 .. 7965260

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAGACTACCCATATGGCAGTGATGGATTACTCATCTGGGGTGCAATCGAGAACTGGGTTCGAACCTACGTGCACCACTACTACCCCGATTCAAGTGTAATCCGAAAAGACAGAGAGCTGCAAGCCTGGTACTGGGAGTCCATCAATGTAGGTCACGCTGATCTCCGCCACGAAACCTGGTGGCCTTTACTGTCCACAGCAGATGACCTAGTCTCAATCCTCAGCACATTGATCTGGCTAGCATCAGCTCAACATGCTGCACTTAATTTTGCACAGTACCCTTATGGAGGTTATGTCCCCAACAGGCCACCCCTGATGAGAAGATTGATCCCGGAAGAGGGTGACCCAGAATACGCAAATTTCGTATCAGACCCACAAAAGTTCTTTCTCTCAGCTTTGCCAAGCGTCCTGGAAGCCACAAAATACATGGCTGTGGTGGACACATTATCGACACATTCGCCGGATGAGGAGTACCTCGGGGAGAGGCAGCAACCGTCTACTTGGTCAGGGGATGCTGATGTGGTGGAGGCATTTTACAAGTTTTCTGCAGAGATTAGAGAGATTGAGAAGGAGATTGATAGAAGGAATAGTGATCCAAATCTTAAACACAGGTGTGGAGCAGGAGTTTTGCCTTATGAGTTGCTTGTACCAAGTTCCGACCCTGGGATTACATGTCGTGGTGTGCCTAATAGTATTTCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0022414 GO:0030258 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0034440 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0080086 GO:0090567 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

236

Amino Acids

26.77

Weight (kDa)

4.77

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 218	4.1e-97	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17420 AT1G72520
fragaria_vesca	FvH4_4g01390 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970
malus_domestica	MD05G1339200.v1.1 MD05G1339300.v1.1 MD05G1339400.v1.1 MD09G1180900.v1.1 MD10G1294000.v1.1 MD17G1167100.v1.1
prunus_persica	Prupe.3G039200_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1
pyrus_communis	pycom09g09820 pycom09g09830 pycom10g24590 pycom17g15900
rosa_chinensis	RchiOBHm_Chr2g0145961 RchiOBHm_Chr3g0472481 RchiOBHm_Chr5g0008481 RchiOBHm_Chr5g0008501 RchiOBHm_Chr5g0008511
rosa_laevigata	RLG00000020179 RLG00000024076 RLG00000031573 RLG00000031574 RLG00000031576
rosa_multiflora	Rmu_sc0001665.1_g000013 Rmu_sc0001702.1_g000033 Rmu_sc0002145.1_g000002 Rmu_sc0034682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434820 Rroxscaffold_2G00100350
rosa_rugosa	Rorug02G0393500 Rorug03G0125900 Rorug04G0435900.1 Rorug04G0436000 Rorug04G0436400 Rorug04G0436400 Rorug04G0436500
rosa_samantha	Rh2BG460800 Rh2DG470100 Rh3AG177700 Rh3BG203600 Rh3CG194000 Rh3CG201100 Rh3DG171500 Rh5AG064800 Rh5AG064900 Rh5AG065200 Rh5BG061900 Rh5BG062100 Rh5BG062300 Rh5BG062400 Rh5BG062500 Rh5CG072000 Rh5CG072200 Rh5CG072300 Rh5CG072400 Rh5CG072600 Rh5CG072800 Rh5DG063500 Rh5DG063700 Rh5DG063900
rosa_wichuraiana	Rw2G036640 Rw3G016380 Rw5G005580 Rw5G005590 Rw5G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	500
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	2 cut(s)	325, 590
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	4 cut(s)	134, 281, 476, 651
AfiI	CCNNNNNNNGG	5 cut(s)	135, 290, 340, 341, 666
AflIII	ACRYGT	1 cut(s)	674
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	4 cut(s)	128, 179, 411, 664
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	3 cut(s)	121, 251, 398
AluI	AGCT	3 cut(s)	121, 251, 398
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	325, 590
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	2 cut(s)	185, 308
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	121, 260, 490
ApoI	RAATTY	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	108, 247, 502
BccI	CCATC	2 cut(s)	20, 152
BciT130I	CCWGG	4 cut(s)	130, 181, 413, 666
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	212, 242
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	3 cut(s)	122, 261, 491
BlsI	GCNGC	3 cut(s)	123, 262, 492
Bme1390I	CCNGG	5 cut(s)	130, 181, 335, 413, 666
BmeT110I	CYCGRG	1 cut(s)	479
BmrFI	CCNGG	5 cut(s)	130, 181, 335, 413, 666
BmrI	ACTGGG	2 cut(s)	67, 145
BmsI	GCATC	2 cut(s)	254, 505
BmtI	GCTAGC	1 cut(s)	245
BmuI	ACTGGG	2 cut(s)	67, 145
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	478, 664, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 612, 642
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 290, 340, 341, 666
Bse1I	ACTGG	2 cut(s)	62, 140
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	4 cut(s)	130, 181, 413, 666
BseDI	CCNNGG	3 cut(s)	478, 664, 665
BseGI	GGATG	2 cut(s)	472, 520
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	5 cut(s)	135, 290, 340, 341, 666
BseMII	CTCAG	2 cut(s)	238, 408
BseNI	ACTGG	2 cut(s)	62, 140
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	108, 247, 502
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	187, 310
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	335, 464
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	5 cut(s)	135, 290, 340, 341, 666
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	187, 310
BsoBI	CYCGRG	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	163, 234, 330, 595
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	187, 310
BspCNI	CTCAG	2 cut(s)	237, 407
BspMAI	CTGCAG	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	325, 590
BspT104I	TTCGAA	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	62, 140
BssECI	CCNNGG	3 cut(s)	478, 664, 665
BssMI	GATC	4 cut(s)	163, 234, 330, 595
Bst2UI	CCWGG	4 cut(s)	130, 181, 413, 666
Bst4CI	ACNGT	3 cut(s)	195, 279, 498
Bst6I	CTCTTC	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	126, 243
BstDEI	CTNAG	2 cut(s)	224, 394
BstEII	GGTNACC	1 cut(s)	344
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	472, 520
BstKTI	GATC	4 cut(s)	166, 237, 333, 598
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	4 cut(s)	163, 234, 330, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	4 cut(s)	130, 181, 413, 666
BstNSI	RCATGY	2 cut(s)	260, 678
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	5 cut(s)	128, 179, 333, 411, 664
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	108, 247, 502
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	187, 310
BtsCI	GGATG	2 cut(s)	472, 520
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	126, 243
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	179
Csp6I	GTAC	4 cut(s)	133, 280, 475, 650
CviAII	CATG	3 cut(s)	257, 430, 675
CviJI	RGCY	9 cut(s)	121, 128, 187, 241, 251, 310, 398, 419, 434
CviKI_1	RGCY	9 cut(s)	121, 128, 187, 241, 251, 310, 398, 419, 434
CviQI	GTAC	4 cut(s)	133, 280, 475, 650
DdeI	CTNAG	2 cut(s)	224, 394
DpnI	GATC	4 cut(s)	165, 236, 332, 597
DpnII	GATC	4 cut(s)	163, 234, 330, 595
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	479
Eco91I	GGTNACC	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	344
EcoRII	CCWGG	4 cut(s)	128, 179, 411, 664
FaeI	CATG	3 cut(s)	260, 433, 678
FaiI	YATR	9 cut(s)	16, 18, 258, 288, 297, 431, 639, 676, 706
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	3 cut(s)	256, 429, 674
FauNDI	CATATG	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	3 cut(s)	122, 261, 491
FokI	GGATG	2 cut(s)	479, 527
Fsp4HI	GCNGC	3 cut(s)	122, 261, 491
FspBI	CTAG	2 cut(s)	212, 242
GluI	GCNGC	3 cut(s)	122, 261, 491
HaeIII	GGCC	2 cut(s)	187, 310
HapII	CCGG	2 cut(s)	335, 464
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	260, 433, 678
HinfI	GANTC	2 cut(s)	92, 140
HpaII	CCGG	2 cut(s)	335, 464
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	4 cut(s)	76, 198, 442, 501
Hpy188I	TCNGA	3 cut(s)	107, 373, 661
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	4 cut(s)	76, 198, 442, 501
HpyAV	CCTTC	2 cut(s)	565, 579
HpyCH4III	ACNGT	3 cut(s)	195, 279, 498
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	47, 76, 124, 263, 275, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	2 cut(s)	224, 394
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	260, 433, 678
Kzo9I	GATC	4 cut(s)	163, 234, 330, 595
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	3 cut(s)	108, 247, 502
LweI	GCATC	2 cut(s)	254, 505
MabI	ACCWGGT	1 cut(s)	179
MaeI	CTAG	2 cut(s)	212, 242
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	155, 344
MalI	GATC	4 cut(s)	165, 236, 332, 597
MboI	GATC	4 cut(s)	163, 234, 330, 595
MboII	GAAGA	3 cut(s)	17, 336, 350
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	268, 361
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	7 cut(s)	233, 284, 334, 463, 480, 488, 523
MseI	TTAA	2 cut(s)	267, 606
MslI	CAYNNNNRTG	2 cut(s)	434, 615
MspI	CCGG	2 cut(s)	335, 464
MspR9I	CCNGG	5 cut(s)	130, 181, 335, 413, 666
MvaI	CCWGG	4 cut(s)	130, 181, 413, 666
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	335
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	4 cut(s)	163, 234, 330, 595
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	260, 433, 678
NmuCI	GTSAC	2 cut(s)	155, 344
NspI	RCATGY	2 cut(s)	260, 678
NspV	TTCGAA	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	615
PasI	CCCWGGG	1 cut(s)	665
PciI	ACATGT	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	212
PfoI	TCCNGGA	2 cut(s)	333, 411
PkrI	GCNGC	3 cut(s)	123, 262, 492
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	73
PscI	ACATGT	1 cut(s)	674
Psp6I	CCWGG	4 cut(s)	128, 179, 411, 664
PspEI	GGTNACC	1 cut(s)	344
PspGI	CCWGG	4 cut(s)	128, 179, 411, 664
PstI	CTGCAG	1 cut(s)	553
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	4 cut(s)	134, 281, 476, 651
RsaNI	GTAC	4 cut(s)	133, 280, 475, 650
RseI	CAYNNNNRTG	2 cut(s)	434, 615
SaqAI	TTAA	2 cut(s)	267, 606
SatI	GCNGC	3 cut(s)	122, 261, 491
Sau3AI	GATC	4 cut(s)	163, 234, 330, 595
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	5 cut(s)	130, 181, 335, 413, 666
SduI	GDGCHC	1 cut(s)	78
SexAI	ACCWGGT	1 cut(s)	179
SfaNI	GCATC	2 cut(s)	254, 505
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	434, 615
Sse9I	AATT	2 cut(s)	268, 361
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	212, 242
StyD4I	CCNGG	5 cut(s)	128, 179, 333, 411, 664
TaaI	ACNGT	3 cut(s)	195, 279, 498
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	51, 64, 452, 701
TasI	AATT	2 cut(s)	268, 361
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	267, 606
Tru9I	TTAA	2 cut(s)	267, 606
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	2 cut(s)	155, 344
TseI	GCWGC	3 cut(s)	121, 260, 490
Tsp45I	GTSAC	2 cut(s)	155, 344
TspRI	CASTG	1 cut(s)	28
Tth111I	GACNNNGTC	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	260, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	2 cut(s)	212, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.