FvH4_5g22760

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007198
Physical Location & Seq
Forward (+)
14065247 .. 14068586
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22760.t1

Sequence Viewer

Length: 960 bp
ATGGAAAGTCTGAGGAGACCCGTTGGGTTGTGCAATTTCTTGTTAGTGGGAGTTTTGTTGGTATTCTTTTGTGGCATTGGGTTTTGCATTGGTTCTTCTGCAGTTTCAAATGAGGTAAAAAGGTGTGATCCAAACTCTAATGATAGTGACTTGAGCATTAGTTGTAGTTCCAAGAAGTTGGTGTTGCAGTCGTACTATGAAAAGTATGAAGACCTACTAGATTCAAGTTTCCAAGATTTTATAGCAAAAGAACTTCCTATTGGTTTGTGTGAGGTGATGCCACATAATCCGAGCCTCGCTTTGAGACTCTCCATTTTGCATCGCAATCTGATAGGGAATGGTTCTCATCGTCATCTTACCTCATCCATTAGACTTAAGATTGAACAAGAATTCATATTTGAGCTTCCTTCTCACCACTGTGAGGTTATAGTCATTGAGAGACTACCATCTGGGGTATTTGCCGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACAGCAATATAGCTGTTTTTGGAGATACAAATTTAGAATTGCCTTCTTTTCTGTCCAATCGTTCTGCTGTCGAGGTTCACATGGATGTTGGTCATGATCTCTTGTTGGGTCAGAGTAAAGAGTCAAACATCAATATAGAGATTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTACTGGGAAGTCAAATTTGGTACACCTGATTTTGTCATGCTCTGCAATGTTGAGGGACTATCACATAATGTAAGCTGTTTATATAGAATACCAGATATTGATGGTTCTGATTCTACATCAGGTACAATTGTCTGGAACATACCTTCTGGGATGAAGGTGCATGCTCGAATGGTTTCCCTCGGTACTTTTATTGCTGCCTTGATTTCAGCCATCTTGATTGCTGTAACATCCATATTTTATTCAGACAACTCCAGCAAACATTCAAAAGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

320

Amino Acids

35.36

Weight (kDa)

5.49

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 113 - 304 1.5e-21 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 122, 458
AcsI RAATTY 3 cut(s) 389, 532, 698
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 5 cut(s) 194, 503, 706, 808, 868
AfiI CCNNNNNNNGG 1 cut(s) 421
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 5 cut(s) 108, 225, 383, 479, 948
AjuI GAANNNNNNNTTGG 4 cut(s) 243, 275, 684, 716
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 4 cut(s) 403, 475, 515, 759
AluI AGCT 4 cut(s) 403, 475, 515, 759
Alw26I GTCTC 3 cut(s) 10, 298, 433
AlwI GGATC 2 cut(s) 122, 458
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 3 cut(s) 389, 532, 698
Asp700I GAANNNNTTC 1 cut(s) 856
AsuHPI GGTGA 2 cut(s) 286, 404
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 865
BccI CCATC 3 cut(s) 454, 779, 902
BcoDI GTCTC 3 cut(s) 10, 298, 433
BfaI CTAG 2 cut(s) 218, 671
BfmI CTRYAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 879
BlsI GCNGC 1 cut(s) 880
BmrI ACTGGG 1 cut(s) 697
BmsI GCATC 2 cut(s) 267, 328
BmuI ACTGGG 1 cut(s) 697
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 862
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 736
BseDI CCNNGG 1 cut(s) 862
BseGI GGATG 4 cut(s) 362, 592, 840, 911
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 736
BseNI ACTGG 1 cut(s) 692
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 865
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 10, 298, 433
BsmFI GGGAC 1 cut(s) 753
Bso31I GGTCTC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 3 cut(s) 127, 463, 598
BspHI TCATGA 1 cut(s) 595
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 2 cut(s) 122, 458
BspTI CTTAAG 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 692
BssECI CCNNGG 1 cut(s) 862
BssMI GATC 3 cut(s) 127, 463, 598
Bst4CI ACNGT 1 cut(s) 419
BstAFI CTTAAG 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 2 cut(s) 11, 957
BstF5I GGATG 4 cut(s) 362, 592, 840, 911
BstKTI GATC 3 cut(s) 130, 466, 601
BstMAI GTCTC 3 cut(s) 10, 298, 433
BstMBI GATC 3 cut(s) 127, 463, 598
BstNSI RCATGY 2 cut(s) 656, 848
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 4 cut(s) 362, 592, 840, 911
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 846
CciI TCATGA 1 cut(s) 595
Csp6I GTAC 5 cut(s) 193, 502, 705, 807, 867
CviAII CATG 5 cut(s) 583, 596, 653, 721, 845
CviJI RGCY 7 cut(s) 294, 403, 475, 515, 684, 759, 893
CviKI_1 RGCY 7 cut(s) 294, 403, 475, 515, 684, 759, 893
CviQI GTAC 5 cut(s) 193, 502, 705, 807, 867
DdeI CTNAG 2 cut(s) 11, 957
DpnI GATC 3 cut(s) 129, 465, 600
DpnII GATC 3 cut(s) 127, 463, 598
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 389
EcoRV GATATC 1 cut(s) 662
FaeI CATG 5 cut(s) 586, 599, 656, 724, 848
FaqI GGGAC 1 cut(s) 753
FatI CATG 5 cut(s) 582, 595, 652, 720, 844
Fnu4HI GCNGC 1 cut(s) 879
FokI GGATG 4 cut(s) 349, 599, 847, 898
Fsp4HI GCNGC 1 cut(s) 879
FspBI CTAG 2 cut(s) 218, 671
GluI GCNGC 1 cut(s) 879
GsuI CTGGAG 1 cut(s) 919
Hin1II CATG 5 cut(s) 586, 599, 656, 724, 848
HinfI GANTC 6 cut(s) 221, 306, 623, 643, 794, 953
HphI GGTGA 2 cut(s) 286, 404
Hpy166II GTNNAC 3 cut(s) 502, 580, 707
Hpy188I TCNGA 6 cut(s) 12, 291, 330, 615, 793, 928
Hpy188III TCNNGA 4 cut(s) 596, 671, 817, 898
Hpy8I GTNNAC 3 cut(s) 502, 580, 707
HpyAV CCTTC 5 cut(s) 417, 497, 555, 832, 837
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4V TGCA 8 cut(s) 33, 87, 101, 187, 319, 656, 729, 844
HpyF3I CTNAG 2 cut(s) 11, 957
Hsp92II CATG 5 cut(s) 586, 599, 656, 724, 848
Kzo9I GATC 3 cut(s) 127, 463, 598
LpnPI CCDG 8 cut(s) 435, 673, 723, 789, 789, 802, 816, 949
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 2 cut(s) 267, 328
MaeI CTAG 2 cut(s) 218, 671
MaeIII GTNAC 2 cut(s) 146, 907
MalI GATC 3 cut(s) 129, 465, 600
MboI GATC 3 cut(s) 127, 463, 598
MboII GAAGA 2 cut(s) 87, 221
MfeI CAATTG 1 cut(s) 810
MluCI AATT 6 cut(s) 34, 389, 532, 539, 698, 810
MlyI GAGTC 2 cut(s) 300, 632
MroXI GAANNNNTTC 1 cut(s) 856
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 2 cut(s) 417, 585
MspCI CTTAAG 1 cut(s) 374
MunI CAATTG 1 cut(s) 810
NdeII GATC 3 cut(s) 127, 463, 598
NlaIII CATG 5 cut(s) 586, 599, 656, 724, 848
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 2 cut(s) 656, 848
OliI CACNNNNGTG 1 cut(s) 417
PaeI GCATGC 1 cut(s) 848
PagI TCATGA 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 4 cut(s) 221, 643, 794, 953
PkrI GCNGC 1 cut(s) 880
PleI GAGTC 2 cut(s) 300, 631
PpsI GAGTC 2 cut(s) 300, 631
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 5 cut(s) 194, 503, 706, 808, 868
RsaNI GTAC 5 cut(s) 193, 502, 705, 807, 867
RseI CAYNNNNRTG 2 cut(s) 417, 585
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 879
Sau3AI GATC 3 cut(s) 127, 463, 598
SchI GAGTC 2 cut(s) 300, 632
SfaNI GCATC 2 cut(s) 267, 328
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 417, 585
SmlI CTYRAG 2 cut(s) 151, 374
SmoI CTYRAG 2 cut(s) 151, 374
SphI GCATGC 1 cut(s) 848
Sse9I AATT 6 cut(s) 34, 389, 532, 539, 698, 810
SspMI CTAG 2 cut(s) 218, 671
TaaI ACNGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 573, 850
TasI AATT 6 cut(s) 34, 389, 532, 539, 698, 810
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 4 cut(s) 221, 643, 794, 953
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 878
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 5 cut(s) 213, 222, 382, 690, 851
TspRI CASTG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 374
XapI RAATTY 3 cut(s) 389, 532, 698
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 2 cut(s) 656, 848
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 2 cut(s) 218, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.