Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005514.1

Orthogroup ID

OG0007198

Physical Location & Seq

Genomic Coordinates Reverse (-)

63466 .. 65732

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005514.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgacgcctcatcaagatgagagcggtggcattatttctagccgtacgctcaaatatgagctcgggatttggtgcttgaattacggatactgcttcaatcctgggttaggattgcagatgtcgttcgatcctaagctaggattgcagtggctgttcaatcctaagctgggattgcaagttatttataatcctggtcgtggcttgatggttcgaagtagcaaaacagagctgcaggtgctcaggcgctcaagcagggagcagggagagcaggggacgcaacgcggggcgtgctcaatgcaggctgctgtcttggcagtgtacagcaatatagctgtctttggagatacaaatttggaattgccttcttttctttccaatcgttctgctgtcgaggttcacatggatgttgatcatggtctcttgttgggtccgagtaaagagtctaccatcaatttagagcttcccctacatgcacgatatccacctctagatgaaactggctattgggaagtcaaattcggtacacctgatttcttcatgcgttgtggtgttgagggaaagtcacataatcaaagctgtttatataggataccagatattgatggttctgattcaacatttggtatggttgtctgggacataccttctgcgatgaaggcacatattcgaattgtttccatctacacttttattgctgccttaatttcagccatcttgattgctgtaacatgcatattttattcagataactccggcaaacattcaaaggaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-X

Protein Analysis

258

Amino Acids

28.62

Weight (kDa)

6.16

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46850 AT5G46850 AT5G46850
fragaria_vesca	FvH4_5g22760
malus_domestica	MD06G1038100.v1.1
prunus_persica	Prupe.5G030700_v2.0.a1 Prupe.5G030700_v2.0.a1
pyrus_communis	pycom06g03180
rosa_chinensis	RchiOBHm_Chr7g0211361
rosa_laevigata	RLG00000003006
rosa_multiflora	Rmu_sc0001226.1_g000005 Rmu_sc0002283.1_g000060 Rmu_sc0005514.1_g000015 Rmu_sc0019867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115290 Rroxscaffold_3G00247900
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh2CG320500 Rh7AG257800 Rh7BG251900 Rh7CG274300 Rh7DG264000 Rh7DG271700
rosa_wichuraiana	Rw7G022030 Rw7G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	443
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	24, 282
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	349, 515
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	46, 320, 523
AfiI	CCNNNNNNNGG	4 cut(s)	107, 137, 167, 197
AgsI	TTSAA	5 cut(s)	79, 97, 157, 615, 765
AjnI	CCWGG	2 cut(s)	100, 190
AluBI	AGCT	7 cut(s)	61, 136, 166, 229, 332, 460, 576
AluI	AGCT	7 cut(s)	61, 136, 166, 229, 332, 460, 576
Alw21I	GWGCWC	3 cut(s)	63, 240, 293
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	229, 302, 695
ApoI	RAATTY	2 cut(s)	349, 515
Asp700I	GAANNNNTTC	1 cut(s)	673
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	428
AsuII	TTCGAA	2 cut(s)	211, 667
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	3 cut(s)	63, 240, 293
BbvI	GCAGC	3 cut(s)	216, 289, 682
BccI	CCATC	5 cut(s)	199, 455, 596, 686, 719
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	102, 192
BciVI	GTATCC	2 cut(s)	80, 582
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	3 cut(s)	39, 137, 488
BfmI	CTRYAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	223
BfuI	GTATCC	2 cut(s)	80, 582
BisI	GCNGC	3 cut(s)	230, 303, 696
BlsI	GCNGC	3 cut(s)	231, 304, 697
Bme1390I	CCNGG	2 cut(s)	102, 192
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	102, 192
Bpu10I	CCTNAGC	3 cut(s)	132, 162, 239
Bpu14I	TTCGAA	2 cut(s)	211, 667
BpuEI	CTTGAG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 137, 167, 197
Bse1I	ACTGG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	102, 192
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	107, 137, 167, 197
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	3 cut(s)	216, 289, 682
BseYI	CCCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	282
BsiHKAI	GWGCWC	3 cut(s)	63, 240, 293
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	753
BsiWI	CGTACG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	286, 650
BslI	CCNNNNNNNGG	4 cut(s)	107, 137, 167, 197
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	286, 650
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	62
Bsp119I	TTCGAA	2 cut(s)	211, 667
Bsp1286I	GDGCHC	3 cut(s)	63, 240, 293
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	127, 409
BspACI	CCGC	2 cut(s)	24, 282
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	2 cut(s)	211, 667
BspTNI	GGTCTC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	127, 409
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	102, 192
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	318
BstBI	TTCGAA	2 cut(s)	211, 667
BstC8I	GCNNGC	2 cut(s)	289, 300
BstDEI	CTNAG	4 cut(s)	132, 162, 239, 774
BstENI	CCTNNNNNAGG	2 cut(s)	105, 135
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	130, 412
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	127, 409
BstMWI	GCNNNNNNNGC	8 cut(s)	142, 172, 235, 265, 274, 288, 311, 656
BstNI	CCWGG	2 cut(s)	102, 192
BstNSI	RCATGY	2 cut(s)	473, 732
BstSCI	CCNGG	2 cut(s)	100, 190
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	216, 289, 682
BsuI	GTATCC	2 cut(s)	80, 582
BtgZI	GCGATG	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	2 cut(s)	152, 321
BtsIMutI	CAGTG	2 cut(s)	152, 321
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	289, 300
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	2 cut(s)	13, 283
Csp6I	GTAC	3 cut(s)	45, 319, 522
CviAII	CATG	5 cut(s)	400, 413, 470, 538, 729
CviQI	GTAC	3 cut(s)	45, 319, 522
DdeI	CTNAG	4 cut(s)	132, 162, 239, 774
DpnI	GATC	2 cut(s)	129, 411
DpnII	GATC	2 cut(s)	127, 409
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	2 cut(s)	105, 135
EcoRII	CCWGG	2 cut(s)	100, 190
EcoRV	GATATC	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	5 cut(s)	403, 416, 473, 541, 732
FaqI	GGGAC	2 cut(s)	286, 650
FatI	CATG	5 cut(s)	399, 412, 469, 537, 728
FauI	CCCGC	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	3 cut(s)	230, 303, 696
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	3 cut(s)	230, 303, 696
FspBI	CTAG	3 cut(s)	39, 137, 488
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	230, 303, 696
GsaI	CCCAGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	247
HapII	CCGG	1 cut(s)	753
HgaI	GACGC	2 cut(s)	13, 283
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	403, 416, 473, 541, 732
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	440, 611, 770
HpaII	CCGG	1 cut(s)	753
Hpy166II	GTNNAC	4 cut(s)	319, 397, 444, 524
Hpy188I	TCNGA	3 cut(s)	432, 610, 745
Hpy188III	TCNNGA	4 cut(s)	14, 64, 488, 715
Hpy8I	GTNNAC	4 cut(s)	319, 397, 444, 524
HpyAV	CCTTC	3 cut(s)	372, 649, 654
HpyCH4V	TGCA	7 cut(s)	115, 145, 175, 232, 298, 473, 732
HpyF10VI	GCNNNNNNNGC	8 cut(s)	142, 172, 235, 265, 274, 288, 311, 656
HpyF3I	CTNAG	4 cut(s)	132, 162, 239, 774
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	403, 416, 473, 541, 732
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	127, 409
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	3 cut(s)	216, 289, 682
MaeI	CTAG	3 cut(s)	39, 137, 488
MaeIII	GTNAC	2 cut(s)	561, 724
MalI	GATC	2 cut(s)	129, 411
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	2 cut(s)	127, 409
MboII	GAAGA	1 cut(s)	526
MhlI	GDGCHC	3 cut(s)	63, 240, 293
MluCI	AATT	7 cut(s)	79, 349, 356, 451, 515, 669, 702
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	4 cut(s)	18, 385, 495, 547
Mph1103I	ATGCAT	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	673
MseI	TTAA	1 cut(s)	701
MslI	CAYNNNNRTG	2 cut(s)	15, 402
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	2 cut(s)	102, 192
MvaI	CCWGG	2 cut(s)	102, 192
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	8 cut(s)	142, 172, 235, 265, 274, 288, 311, 656
NdeII	GATC	2 cut(s)	127, 409
NlaIII	CATG	5 cut(s)	403, 416, 473, 541, 732
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	734
NspI	RCATGY	2 cut(s)	473, 732
NspV	TTCGAA	2 cut(s)	211, 667
PaqCI	CACCTGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	611, 770
Pfl23II	CGTACG	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	231, 304, 697
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PsiI	TTATAA	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	100, 190
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	100, 190
PspLI	CGTACG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	151
RsaI	GTAC	3 cut(s)	46, 320, 523
RsaNI	GTAC	3 cut(s)	45, 319, 522
RseI	CAYNNNNRTG	2 cut(s)	15, 402
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	3 cut(s)	230, 303, 696
Sau3AI	GATC	2 cut(s)	127, 409
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	102, 192
SduI	GDGCHC	3 cut(s)	63, 240, 293
SfcI	CTRYAG	1 cut(s)	230
SfuI	TTCGAA	2 cut(s)	211, 667
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	15, 402
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	7 cut(s)	79, 349, 356, 451, 515, 669, 702
SsiI	CCGC	2 cut(s)	24, 282
SspMI	CTAG	3 cut(s)	39, 137, 488
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	100, 190
TaqI	TCGA	4 cut(s)	126, 211, 390, 667
TasI	AATT	7 cut(s)	79, 349, 356, 451, 515, 669, 702
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	611, 770
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	2 cut(s)	152, 321
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	3 cut(s)	229, 302, 695
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	3 cut(s)	507, 526, 668
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	152, 321
VpaK11BI	GGWCC	1 cut(s)	428
XagI	CCTNNNNNAGG	2 cut(s)	105, 135
XapI	RAATTY	2 cut(s)	349, 515
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	473, 732
XmiI	GTMKAC	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	673
XspI	CTAG	3 cut(s)	39, 137, 488
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.