Rroxscaffold_2G00115290

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007198
Physical Location & Seq
Forward (+)
41514367 .. 41515486
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115290.1

Sequence Viewer

Length: 357 bp
ATGGTTCTCATCGTCATCTTACGTCATCCTTTAGATCGACTTAAGATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCACAGTGAGGTCATAGTCATTGAGAGACTACCATCTGGGGTATTTGCCGATCCATTTGAGCTTCCAACATCTCCTTCAGCGTGGTGGATACCAGATATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGGACATGCCTTCTGGGATGAAGGCACATGTTCGAATTGTTTCTGTCTTCACTTTTATTGCTGCCTTAATTTCAGCCATCTTGATTGCTATAACATCCATATTTTATTCAGACAACTCCGGCAAACGTTCAAAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

118

Amino Acids

13.09

Weight (kDa)

5.19

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 340
AclWI GGATC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 88
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 3 cut(s) 50, 195, 345
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AleI CACNNNNGTG 1 cut(s) 84
AluBI AGCT 2 cut(s) 70, 142
AluI AGCT 2 cut(s) 70, 142
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 247
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 262
BccI CCATC 3 cut(s) 121, 176, 299
BciVI GTATCC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 100
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 25, 237, 308
BseLI CCNNNNNNNGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 34, 130
BspPI GGATC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 247
BspTI CTTAAG 1 cut(s) 41
BssMI GATC 2 cut(s) 34, 130
Bst4CI ACNGT 2 cut(s) 86, 208
BstAFI CTTAAG 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 3 cut(s) 25, 237, 308
BstKTI GATC 2 cut(s) 37, 133
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 34, 130
BstNSI RCATGY 2 cut(s) 223, 245
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 253
BsuI GTATCC 1 cut(s) 162
BtsCI GGATG 3 cut(s) 25, 237, 308
BtsIMutI CAGTG 1 cut(s) 91
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 220, 242
CviJI RGCY 3 cut(s) 70, 142, 290
CviKI_1 RGCY 3 cut(s) 70, 142, 290
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 354
DpnI GATC 2 cut(s) 36, 132
DpnII GATC 2 cut(s) 34, 130
Eco57I CTGAAG 1 cut(s) 141
FaeI CATG 2 cut(s) 223, 245
FaiI YATR 6 cut(s) 62, 95, 221, 243, 305, 314
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 219, 241
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 3 cut(s) 12, 244, 295
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
HapII CCGG 1 cut(s) 333
Hin1II CATG 2 cut(s) 223, 245
HinfI GANTC 3 cut(s) 56, 191, 350
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 190, 325
Hpy188III TCNNGA 1 cut(s) 295
HpyAV CCTTC 4 cut(s) 84, 165, 229, 234
HpyCH4III ACNGT 2 cut(s) 86, 208
HpyCH4IV ACGT 2 cut(s) 22, 340
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 22, 340
Hsp92II CATG 2 cut(s) 223, 245
Kzo9I GATC 2 cut(s) 34, 130
LpnPI CCDG 5 cut(s) 102, 186, 199, 213, 346
Lsp1109I GCAGC 1 cut(s) 262
MaeII ACGT 2 cut(s) 22, 340
MalI GATC 2 cut(s) 36, 132
MboI GATC 2 cut(s) 34, 130
MboII GAAGA 1 cut(s) 253
MluCI AATT 2 cut(s) 249, 282
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 2 cut(s) 42, 281
MslI CAYNNNNRTG 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 333
NdeII GATC 2 cut(s) 34, 130
NlaIII CATG 2 cut(s) 223, 245
NspI RCATGY 2 cut(s) 223, 245
NspV TTCGAA 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 84
PciI ACATGT 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 56, 191, 350
PkrI GCNGC 1 cut(s) 277
PscI ACATGT 1 cut(s) 241
Psp1406I AACGTT 1 cut(s) 340
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 42, 281
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 34, 130
SetI ASST 5 cut(s) 25, 72, 93, 144, 343
SfuI TTCGAA 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 41, 65
SmoI CTYRAG 2 cut(s) 41, 65
Sse9I AATT 2 cut(s) 249, 282
TaaI ACNGT 2 cut(s) 86, 208
TaiI ACGT 2 cut(s) 25, 343
TaqI TCGA 2 cut(s) 37, 247
TasI AATT 2 cut(s) 249, 282
TfiI GAWTC 3 cut(s) 56, 191, 350
Tru1I TTAA 2 cut(s) 42, 281
Tru9I TTAA 2 cut(s) 42, 281
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 1 cut(s) 91
Vha464I CTTAAG 1 cut(s) 41
XceI RCATGY 2 cut(s) 223, 245
XmnI GAANNNNTTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.