Rh7DG271700

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0007198
Physical Location & Seq
Forward (+)
29214461 .. 29217487
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG271700.1

Sequence Viewer

Length: 699 bp
ATGAGCCATAGATCGAGTTGCGCAAGGATCGACTTGGATCCCCCTGTTTTCACCCTAGATGTAGGGTTCCGAGATCCCAGACCCCCGCGAACGTTGAACATCACTCATCGGCAACATATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCACTGTGAAGTCATAGTCATTGAGAGACTGCCACCTGGGGTATTTGCCTATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACGGCAATATAGCTGTCTTTGGAGATACAAATTTGGAATTGCCTTCTTTTCTTTCCAATCGTTCTGCTGTAGAGGTTCACATGGATGTTGGTCATGATCTCTTGCTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTATTGGGAAGTCAAATTTGGTACACCTGATTTCTTCATGCGTTGCAGTGTTGAGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGATATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGAACATACCTTCTGGGATGAAGGCACATGCTCGAATTGTTTATGTCTTCACTTTTATTGCTGCCTTAATTTCAGCCATCTTGATTGCTGTAACATCCATATTTTATTCAGACAACTCCAGCAAACGTTCAAAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

232

Amino Acids

26.08

Weight (kDa)

5.85

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 42 - 216 1.5e-19 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 22
AccI GTMKAC 1 cut(s) 365
AccII CGCG 1 cut(s) 88
AciI CCGC 1 cut(s) 86
AclI AACGTT 2 cut(s) 92, 682
AclWI GGATC 4 cut(s) 32, 35, 45, 68
AcsI RAATTY 2 cut(s) 271, 437
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 3 cut(s) 242, 445, 547
AgsI TTSAA 5 cut(s) 97, 122, 218, 537, 687
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 5 cut(s) 142, 214, 254, 382, 498
AluI AGCT 5 cut(s) 142, 214, 254, 382, 498
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 4 cut(s) 32, 35, 45, 68
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 2 cut(s) 271, 437
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 43, 143
AvaII GGWCC 1 cut(s) 350
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BamHI GGATCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 595
BbvI GCAGC 1 cut(s) 604
BccI CCATC 3 cut(s) 377, 518, 641
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 56, 410
BfmI CTRYAG 1 cut(s) 309
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 39, 68, 351
BmrFI CCNGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 658
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 331, 579, 650
BseXI GCAGC 1 cut(s) 604
BseYI CCCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 172
Bsp143I GATC 5 cut(s) 11, 27, 37, 73, 337
BspACI CCGC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 39, 68, 351
BspPI GGATC 4 cut(s) 32, 35, 45, 68
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 5 cut(s) 11, 27, 37, 73, 337
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 158, 550
BstDEI CTNAG 1 cut(s) 696
BstF5I GGATG 3 cut(s) 331, 579, 650
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 5 cut(s) 14, 30, 40, 76, 340
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 5 cut(s) 11, 27, 37, 73, 337
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 2 cut(s) 395, 587
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 37, 73
BstYI RGATCY 2 cut(s) 37, 73
BsuI GTATCC 1 cut(s) 504
BtsCI GGATG 3 cut(s) 331, 579, 650
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 154, 475
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 3 cut(s) 241, 444, 546
CviAII CATG 5 cut(s) 322, 335, 392, 460, 584
CviJI RGCY 8 cut(s) 6, 142, 214, 254, 382, 423, 498, 632
CviKI_1 RGCY 8 cut(s) 6, 142, 214, 254, 382, 423, 498, 632
CviQI GTAC 3 cut(s) 241, 444, 546
DdeI CTNAG 1 cut(s) 696
DpnI GATC 5 cut(s) 13, 29, 39, 75, 339
DpnII GATC 5 cut(s) 11, 27, 37, 73, 337
Eco32I GATATC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 401
FaeI CATG 5 cut(s) 325, 338, 395, 463, 587
FatI CATG 5 cut(s) 321, 334, 391, 459, 583
FauI CCCGC 1 cut(s) 93
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 3 cut(s) 338, 586, 637
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 2 cut(s) 56, 410
FspI TGCGCA 1 cut(s) 22
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 618
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 658
HhaI GCGC 1 cut(s) 23
Hin1II CATG 5 cut(s) 325, 338, 395, 463, 587
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 4 cut(s) 128, 362, 533, 692
HphI GGTGA 2 cut(s) 43, 143
Hpy166II GTNNAC 4 cut(s) 241, 319, 366, 446
Hpy188I TCNGA 4 cut(s) 71, 354, 532, 667
Hpy188III TCNNGA 4 cut(s) 335, 410, 556, 637
Hpy8I GTNNAC 4 cut(s) 241, 319, 366, 446
HpyAV CCTTC 5 cut(s) 156, 236, 294, 571, 576
HpyCH4III ACNGT 2 cut(s) 158, 550
HpyCH4IV ACGT 2 cut(s) 92, 682
HpyCH4V TGCA 2 cut(s) 395, 468
HpyF3I CTNAG 1 cut(s) 696
HpySE526I ACGT 2 cut(s) 92, 682
Hsp92II CATG 5 cut(s) 325, 338, 395, 463, 587
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 5 cut(s) 11, 27, 37, 73, 337
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 2 cut(s) 56, 410
MaeII ACGT 2 cut(s) 92, 682
MaeIII GTNAC 2 cut(s) 483, 646
MalI GATC 5 cut(s) 13, 29, 39, 75, 339
MboI GATC 5 cut(s) 11, 27, 37, 73, 337
MboII GAAGA 2 cut(s) 448, 595
MflI RGATCY 2 cut(s) 37, 73
MluCI AATT 6 cut(s) 271, 278, 373, 437, 591, 624
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 3 cut(s) 307, 417, 469
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 2 cut(s) 156, 324
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 88
NdeII GATC 5 cut(s) 11, 27, 37, 73, 337
NlaIII CATG 5 cut(s) 325, 338, 395, 463, 587
NlaIV GGNNCC 3 cut(s) 39, 68, 351
NmuCI GTSAC 1 cut(s) 483
NsbI TGCGCA 1 cut(s) 22
NspI RCATGY 2 cut(s) 395, 587
OliI CACNNNNGTG 1 cut(s) 156
PagI TCATGA 1 cut(s) 334
PfeI GAWTC 3 cut(s) 128, 533, 692
PkrI GCNGC 1 cut(s) 619
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp1406I AACGTT 2 cut(s) 92, 682
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 3 cut(s) 39, 68, 351
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 2 cut(s) 37, 73
RsaI GTAC 3 cut(s) 242, 445, 547
RsaNI GTAC 3 cut(s) 241, 444, 546
RseI CAYNNNNRTG 2 cut(s) 156, 324
SaqAI TTAA 1 cut(s) 623
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 5 cut(s) 11, 27, 37, 73, 337
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 156, 324
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 6 cut(s) 271, 278, 373, 437, 591, 624
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 56, 410
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 158, 550
TaiI ACGT 2 cut(s) 95, 685
TaqI TCGA 3 cut(s) 14, 30, 589
TasI AATT 6 cut(s) 271, 278, 373, 437, 591, 624
TfiI GAWTC 3 cut(s) 128, 533, 692
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 2 cut(s) 161, 475
TseFI GTSAC 1 cut(s) 483
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 3 cut(s) 429, 448, 590
TspRI CASTG 2 cut(s) 161, 475
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 2 cut(s) 271, 437
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 2 cut(s) 395, 587
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 2 cut(s) 56, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.