Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019867.1

Orthogroup ID

OG0007198

Physical Location & Seq

Genomic Coordinates Reverse (-)

132 .. 1563

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgtttactgactttcctgttccctcttcgtgttactttaaagactccgatctcttacagatatccttcatttttcaggtaaaaaggtgtgatccacactctaatgatagtgactcaagtattagttgtagctccaagaactatgttttgcagtcttactatgaaaaatatgaagacctactagattcaaatttccaagattttatagcacaagaacttcctattggtttgtgtgaggtgctgccacataatctgagtcttgctttaagactctccattttgcatcgcaatctgatagggagtggttctcatcgtcatcttacgtcgtcctttagacttaagattgaacaagaatccatacttgagcttccttctcaccactgtgaggtcatagtcattgagagactgccatctggggtatttgccgatccatttgagcttcaacatctccttcagcgtggtgtgtacggcaatatagctgtctttggagatacaaatttggaattgccttcttttctttccaatcgttctgctgtagaggttcacatggatgttggtcatgatctcttgctgggtccgagtaaagagtctaccatcaatttagagcttcccctacatgcacgatatccacctctagatgaaagtggctattgggaagtcaaatttggtacacctgatttcttcatgcgttgcagtgttgacggaaagtcacataatcaaagctgtttatataggataccagatattgatggttctgattcaacatttggtacagttgtctggaacataccttctgggatgaaggcacatgctcgaattgtttctgtcttcacttttattgctgccttaatttcagccatcttgattgctgtaacatccatattttattcagacaactccagcaaacgttcaaaggaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-X

Protein Analysis

307

Amino Acids

34.47

Weight (kDa)

5.39

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46850 AT5G46850 AT5G46850
fragaria_vesca	FvH4_5g22760
malus_domestica	MD06G1038100.v1.1
prunus_persica	Prupe.5G030700_v2.0.a1 Prupe.5G030700_v2.0.a1
pyrus_communis	pycom06g03180
rosa_chinensis	RchiOBHm_Chr7g0211361
rosa_laevigata	RLG00000003006
rosa_multiflora	Rmu_sc0001226.1_g000005 Rmu_sc0002283.1_g000060 Rmu_sc0005514.1_g000015 Rmu_sc0019867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115290 Rroxscaffold_3G00247900
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh2CG320500 Rh7AG257800 Rh7BG251900 Rh7CG274300 Rh7DG264000 Rh7DG271700
rosa_wichuraiana	Rw7G022030 Rw7G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	590
AclI	AACGTT	1 cut(s)	907
AclWI	GGATC	2 cut(s)	86, 422
AcsI	RAATTY	3 cut(s)	190, 496, 662
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	3 cut(s)	467, 670, 772
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	5 cut(s)	189, 347, 443, 762, 912
AhdI	GACNNNNNGTC	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	4 cut(s)	207, 239, 648, 680
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	132, 367, 439, 479, 607, 723
AluI	AGCT	6 cut(s)	132, 367, 439, 479, 607, 723
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	86, 422
ApeKI	GCWGC	2 cut(s)	241, 842
ApoI	RAATTY	3 cut(s)	190, 496, 662
Asp700I	GAANNNNTTC	1 cut(s)	820
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	575
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BbsI	GAAGAC	2 cut(s)	180, 820
BbvI	GCAGC	2 cut(s)	228, 829
BccI	CCATC	4 cut(s)	418, 602, 743, 866
BceAI	ACGGC	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	2 cut(s)	182, 635
BfmI	CTRYAG	1 cut(s)	534
BfrI	CTTAAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	729
BisI	GCNGC	2 cut(s)	242, 843
BlsI	GCNGC	2 cut(s)	243, 844
Bme18I	GGWCC	1 cut(s)	575
BmeRI	GACNNNNNGTC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	576
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	180, 820
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpmI	CTGGAG	1 cut(s)	883
BpuEI	CTTGAG	2 cut(s)	100, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
BseGI	GGATG	3 cut(s)	556, 804, 875
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	228, 829
BseYI	CCCAGC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	49, 91, 427, 562
BspCNI	CTCAG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	86, 422
BspTI	CTTAAG	1 cut(s)	338
BssMI	GATC	4 cut(s)	49, 91, 427, 562
Bst4CI	ACNGT	2 cut(s)	383, 775
Bst6I	CTCTTC	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	254, 921
BstF5I	GGATG	3 cut(s)	556, 804, 875
BstKTI	GATC	4 cut(s)	52, 94, 430, 565
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	4 cut(s)	49, 91, 427, 562
BstNSI	RCATGY	2 cut(s)	620, 812
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	228, 829
BstV2I	GAAGAC	2 cut(s)	180, 820
BsuI	GTATCC	1 cut(s)	729
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	556, 804, 875
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	379, 700
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	466, 669, 771
CviAII	CATG	5 cut(s)	547, 560, 617, 685, 809
CviJI	RGCY	8 cut(s)	132, 367, 439, 479, 607, 648, 723, 857
CviKI_1	RGCY	8 cut(s)	132, 367, 439, 479, 607, 648, 723, 857
CviQI	GTAC	3 cut(s)	466, 669, 771
DdeI	CTNAG	2 cut(s)	254, 921
DpnI	GATC	4 cut(s)	51, 93, 429, 564
DpnII	GATC	4 cut(s)	49, 91, 427, 562
DraI	TTTAAA	1 cut(s)	40
DriI	GACNNNNNGTC	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	31
Eco32I	GATATC	2 cut(s)	63, 626
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	437
EcoRV	GATATC	2 cut(s)	63, 626
FaeI	CATG	5 cut(s)	550, 563, 620, 688, 812
FatI	CATG	5 cut(s)	546, 559, 616, 684, 808
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	2 cut(s)	242, 843
FokI	GGATG	3 cut(s)	563, 811, 862
Fsp4HI	GCNGC	2 cut(s)	242, 843
FspBI	CTAG	2 cut(s)	182, 635
GluI	GCNGC	2 cut(s)	242, 843
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	883
Hin1II	CATG	5 cut(s)	550, 563, 620, 688, 812
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	9 cut(s)	44, 113, 185, 256, 270, 353, 587, 758, 917
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	6 cut(s)	6, 466, 544, 591, 671, 700
Hpy188I	TCNGA	6 cut(s)	49, 255, 294, 579, 757, 892
Hpy188III	TCNNGA	4 cut(s)	560, 635, 781, 862
Hpy8I	GTNNAC	6 cut(s)	6, 466, 544, 591, 671, 700
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	6 cut(s)	76, 381, 461, 519, 796, 801
HpyCH4III	ACNGT	2 cut(s)	383, 775
HpyCH4IV	ACGT	2 cut(s)	323, 907
HpyCH4V	TGCA	4 cut(s)	151, 283, 620, 693
HpyF3I	CTNAG	2 cut(s)	254, 921
HpySE526I	ACGT	2 cut(s)	323, 907
Hsp92II	CATG	5 cut(s)	550, 563, 620, 688, 812
Kzo9I	GATC	4 cut(s)	49, 91, 427, 562
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	9 cut(s)	30, 62, 399, 557, 687, 753, 766, 780, 913
Lsp1109I	GCAGC	2 cut(s)	228, 829
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	182, 635
MaeII	ACGT	2 cut(s)	323, 907
MaeIII	GTNAC	4 cut(s)	32, 110, 708, 871
MalI	GATC	4 cut(s)	51, 93, 429, 564
MboI	GATC	4 cut(s)	49, 91, 427, 562
MboII	GAAGA	4 cut(s)	18, 185, 673, 820
MluCI	AATT	7 cut(s)	190, 496, 503, 598, 662, 816, 849
MlyI	GAGTC	5 cut(s)	38, 107, 264, 265, 596
MnlI	CCTC	5 cut(s)	34, 229, 379, 532, 642
MroXI	GAANNNNTTC	1 cut(s)	820
MseI	TTAA	4 cut(s)	39, 266, 339, 848
MslI	CAYNNNNRTG	3 cut(s)	102, 381, 549
MspCI	CTTAAG	1 cut(s)	338
NdeII	GATC	4 cut(s)	49, 91, 427, 562
NlaIII	CATG	5 cut(s)	550, 563, 620, 688, 812
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	110, 708
NspI	RCATGY	2 cut(s)	620, 812
OliI	CACNNNNGTG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	185, 353, 758, 917
PkrI	GCNGC	2 cut(s)	243, 844
PleI	GAGTC	5 cut(s)	38, 107, 264, 264, 595
PpsI	GAGTC	5 cut(s)	38, 107, 264, 264, 595
Psp1406I	AACGTT	1 cut(s)	907
PspFI	CCCAGC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	575
RsaI	GTAC	3 cut(s)	467, 670, 772
RsaNI	GTAC	3 cut(s)	466, 669, 771
RseI	CAYNNNNRTG	3 cut(s)	102, 381, 549
SaqAI	TTAA	4 cut(s)	39, 266, 339, 848
SatI	GCNGC	2 cut(s)	242, 843
Sau3AI	GATC	4 cut(s)	49, 91, 427, 562
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	5 cut(s)	38, 107, 264, 265, 596
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	3 cut(s)	102, 381, 549
SmlI	CTYRAG	3 cut(s)	115, 338, 362
SmoI	CTYRAG	3 cut(s)	115, 338, 362
Sse9I	AATT	7 cut(s)	190, 496, 503, 598, 662, 816, 849
SspMI	CTAG	2 cut(s)	182, 635
TaaI	ACNGT	2 cut(s)	383, 775
TaiI	ACGT	2 cut(s)	326, 910
TaqI	TCGA	1 cut(s)	814
TasI	AATT	7 cut(s)	190, 496, 503, 598, 662, 816, 849
TfiI	GAWTC	4 cut(s)	185, 353, 758, 917
Tru1I	TTAA	4 cut(s)	39, 266, 339, 848
Tru9I	TTAA	4 cut(s)	39, 266, 339, 848
TscAI	CASTG	2 cut(s)	386, 700
TseFI	GTSAC	2 cut(s)	110, 708
TseI	GCWGC	2 cut(s)	241, 842
Tsp45I	GTSAC	2 cut(s)	110, 708
TspDTI	ATGAA	6 cut(s)	58, 177, 186, 654, 673, 815
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	2 cut(s)	386, 700
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	3 cut(s)	190, 496, 662
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	2 cut(s)	620, 812
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	2 cut(s)	182, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.