Rh7DG264000

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0007198
Physical Location & Seq
Reverse (-)
28111468 .. 28114909
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG264000.1

Sequence Viewer

Length: 1059 bp
ATGCAGATGAAAATCCCCAAATCTGATTGTGGGTTCCTCCAAACACAAATAGGGTTTTCAATTTGGGCTCTTTTTGCTCCCAAACTATTGCTGATTCAGTTCCTTGGTATAATGGAAACTCAGAGGAGAACTTTTGGGTTGTGCTATTCCTTGTTAGTGGGGGTTTTCTTGGTATTCCTCTCTGGCATTGGTTCTTCTGCAGTTTCAAATGAGGTAAAAAGGTGTGATCCACACTCTAATGATAGTGACTCAAGTATTAGTTGTAGCTCCAAGAACTATGTTTTGCAGTCTTACTATGAAAAATATGAAGACCTACTAGATTCAAATTTCCAAGATTTTATAGCACAAGAACTTCCTATTGGTTTGTGTGAGGTGCTGCCACATAATCTGAGTCTTGCTTTAAGACTCTCCATTTTGCATCGCAATCTGATAGGGAATGGTTCTCATCGTCATCTTACGTCGTCCTTTAGACTTAAGATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCACTGTGAGGTCATAGTCATTGAGAGACTGCCATCTGGGGTATTTGCCGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACGGCAATATAGCTGTCTTTGGAGATACAAATTTGGAATTGCCTTCTTTTCTTTCCAATCGTTCTGCTGTAGAGGTTCACATGGATGTTGGTCATGATCTCTTGCTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTATTGGGAAGTCAAATTTGGTACACCTGATTTCTTCATGCGTTGCAGTGTTGAGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGATATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGAACATACCTTCTGGGATGAAGGCACATGCTCGAATTGTTTCTGTCTTCACTTTTATTGCTGCCTTAATTTCAGCCATCTTGATTGCTGTAACATCCATATTTTATTCAGACAACTCCAGCAAACGTTCAAAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

352

Amino Acids

39.3

Weight (kDa)

5.79

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 146 - 337 5.7e-23 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 725
AclI AACGTT 1 cut(s) 1042
AclWI GGATC 2 cut(s) 221, 557
AcsI RAATTY 3 cut(s) 325, 631, 797
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 3 cut(s) 602, 805, 907
AfiI CCNNNNNNNGG 1 cut(s) 520
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 7 cut(s) 60, 207, 324, 482, 578, 897, 1047
AjuI GAANNNNNNNTTGG 4 cut(s) 342, 374, 783, 815
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 6 cut(s) 267, 502, 574, 614, 742, 858
AluI AGCT 6 cut(s) 267, 502, 574, 614, 742, 858
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 2 cut(s) 221, 557
ApeKI GCWGC 2 cut(s) 376, 977
ApoI RAATTY 3 cut(s) 325, 631, 797
Asp700I GAANNNNTTC 1 cut(s) 955
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 710
BaeI ACNNNNGTAYC 2 cut(s) 897, 930
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 2 cut(s) 315, 955
BbvI GCAGC 2 cut(s) 363, 964
BccI CCATC 4 cut(s) 553, 737, 878, 1001
BceAI ACGGC 1 cut(s) 619
BciVI GTATCC 1 cut(s) 864
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 2 cut(s) 317, 770
BfmI CTRYAG 2 cut(s) 198, 669
BfrI CTTAAG 1 cut(s) 473
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 2 cut(s) 377, 978
BlsI GCNGC 2 cut(s) 378, 979
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 35, 711
BmsI GCATC 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 315, 955
BpmI CTGGAG 1 cut(s) 1018
BpuEI CTTGAG 2 cut(s) 235, 518
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 691, 939, 1010
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 134, 380
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 363, 964
BseYI CCCAGC 1 cut(s) 706
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 226, 562, 697
BspCNI CTCAG 2 cut(s) 133, 381
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 35, 711
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 2 cut(s) 221, 557
BspTI CTTAAG 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 3 cut(s) 226, 562, 697
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 518, 910
BstAFI CTTAAG 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 120, 389, 1056
BstF5I GGATG 3 cut(s) 691, 939, 1010
BstKTI GATC 3 cut(s) 229, 565, 700
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 3 cut(s) 226, 562, 697
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNSI RCATGY 2 cut(s) 755, 947
BstSFI CTRYAG 2 cut(s) 198, 669
BstV1I GCAGC 2 cut(s) 363, 964
BstV2I GAAGAC 2 cut(s) 315, 955
BsuI GTATCC 1 cut(s) 864
BtgZI GCGATG 1 cut(s) 404
BtsCI GGATG 3 cut(s) 691, 939, 1010
BtsI GCAGTG 1 cut(s) 835
BtsIMutI CAGTG 2 cut(s) 514, 835
CciI TCATGA 1 cut(s) 694
Cfr13I GGNCC 1 cut(s) 710
Csp6I GTAC 3 cut(s) 601, 804, 906
CviAII CATG 5 cut(s) 682, 695, 752, 820, 944
CviJI RGCY 9 cut(s) 68, 267, 502, 574, 614, 742, 783, 858, 992
CviKI_1 RGCY 9 cut(s) 68, 267, 502, 574, 614, 742, 783, 858, 992
CviQI GTAC 3 cut(s) 601, 804, 906
DdeI CTNAG 3 cut(s) 120, 389, 1056
DpnI GATC 3 cut(s) 228, 564, 699
DpnII GATC 3 cut(s) 226, 562, 697
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 761
Eco47I GGWCC 1 cut(s) 710
Eco57I CTGAAG 1 cut(s) 572
EcoRV GATATC 1 cut(s) 761
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 5 cut(s) 685, 698, 755, 823, 947
FatI CATG 5 cut(s) 681, 694, 751, 819, 943
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 2 cut(s) 377, 978
FokI GGATG 3 cut(s) 698, 946, 997
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 377, 978
FspBI CTAG 2 cut(s) 317, 770
GluI GCNGC 2 cut(s) 377, 978
GsaI CCCAGC 1 cut(s) 710
GsuI CTGGAG 1 cut(s) 1018
Hin1II CATG 5 cut(s) 685, 698, 755, 823, 947
HinfI GANTC 9 cut(s) 94, 248, 320, 391, 405, 488, 722, 893, 1052
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 4 cut(s) 601, 679, 726, 806
Hpy188I TCNGA 7 cut(s) 25, 123, 390, 429, 714, 892, 1027
Hpy188III TCNNGA 4 cut(s) 695, 770, 916, 997
Hpy8I GTNNAC 4 cut(s) 601, 679, 726, 806
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 5 cut(s) 516, 596, 654, 931, 936
HpyCH4III ACNGT 2 cut(s) 518, 910
HpyCH4IV ACGT 2 cut(s) 458, 1042
HpyCH4V TGCA 6 cut(s) 4, 200, 286, 418, 755, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 3 cut(s) 120, 389, 1056
HpySE526I ACGT 2 cut(s) 458, 1042
Hsp92II CATG 5 cut(s) 685, 698, 755, 823, 947
Kzo9I GATC 3 cut(s) 226, 562, 697
LmnI GCTCC 2 cut(s) 82, 272
LpnPI CCDG 8 cut(s) 168, 534, 692, 822, 888, 901, 915, 1048
Lsp1109I GCAGC 2 cut(s) 363, 964
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 317, 770
MaeII ACGT 2 cut(s) 458, 1042
MaeIII GTNAC 3 cut(s) 245, 843, 1006
MalI GATC 3 cut(s) 228, 564, 699
MboI GATC 3 cut(s) 226, 562, 697
MboII GAAGA 4 cut(s) 186, 320, 808, 955
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 8 cut(s) 60, 325, 631, 638, 733, 797, 951, 984
MlyI GAGTC 4 cut(s) 242, 399, 400, 731
MnlI CCTC 9 cut(s) 47, 117, 188, 205, 364, 514, 667, 777, 829
MroXI GAANNNNTTC 1 cut(s) 955
MseI TTAA 3 cut(s) 401, 474, 983
MslI CAYNNNNRTG 3 cut(s) 237, 516, 684
MspCI CTTAAG 1 cut(s) 473
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 3 cut(s) 226, 562, 697
NlaIII CATG 5 cut(s) 685, 698, 755, 823, 947
NlaIV GGNNCC 2 cut(s) 35, 711
NmuCI GTSAC 2 cut(s) 245, 843
NspI RCATGY 2 cut(s) 755, 947
OliI CACNNNNGTG 1 cut(s) 516
PagI TCATGA 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 955
PfeI GAWTC 5 cut(s) 94, 320, 488, 893, 1052
PkrI GCNGC 2 cut(s) 378, 979
PleI GAGTC 4 cut(s) 242, 399, 399, 730
PpsI GAGTC 4 cut(s) 242, 399, 399, 730
Psp1406I AACGTT 1 cut(s) 1042
PspFI CCCAGC 1 cut(s) 706
PspN4I GGNNCC 2 cut(s) 35, 711
PspPI GGNCC 1 cut(s) 710
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 3 cut(s) 602, 805, 907
RsaNI GTAC 3 cut(s) 601, 804, 906
RseI CAYNNNNRTG 3 cut(s) 237, 516, 684
SaqAI TTAA 3 cut(s) 401, 474, 983
SatI GCNGC 2 cut(s) 377, 978
Sau3AI GATC 3 cut(s) 226, 562, 697
Sau96I GGNCC 1 cut(s) 710
SchI GAGTC 4 cut(s) 242, 399, 400, 731
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 2 cut(s) 198, 669
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 3 cut(s) 237, 516, 684
SmlI CTYRAG 3 cut(s) 250, 473, 497
SmoI CTYRAG 3 cut(s) 250, 473, 497
Sse9I AATT 8 cut(s) 60, 325, 631, 638, 733, 797, 951, 984
SspMI CTAG 2 cut(s) 317, 770
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 518, 910
TaiI ACGT 2 cut(s) 461, 1045
TaqI TCGA 1 cut(s) 949
TasI AATT 8 cut(s) 60, 325, 631, 638, 733, 797, 951, 984
TfiI GAWTC 5 cut(s) 94, 320, 488, 893, 1052
Tru1I TTAA 3 cut(s) 401, 474, 983
Tru9I TTAA 3 cut(s) 401, 474, 983
TscAI CASTG 2 cut(s) 521, 835
TseFI GTSAC 2 cut(s) 245, 843
TseI GCWGC 2 cut(s) 376, 977
Tsp45I GTSAC 2 cut(s) 245, 843
TspDTI ATGAA 6 cut(s) 23, 312, 321, 789, 808, 950
TspRI CASTG 2 cut(s) 521, 835
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 3 cut(s) 325, 631, 797
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 2 cut(s) 755, 947
XmiI GTMKAC 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 955
XspI CTAG 2 cut(s) 317, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.