Rh7CG274300

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007198
Physical Location & Seq
Forward (+)
27494643 .. 27503089
8447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG274300.1

Sequence Viewer

Length: 975 bp
ATGTCTCTGTTTCAGTTCCTTGGTATAATGGAAACTCAGAGGAGAACTTTTGGGTTGTGCTATTCCTTGTCAGTGGGGGTTTTCTTGGTATTCTTCTCTGGCATTGGTTCTTCTGCAGTTTCAAATGAGGTAAAAAGGTGTGATCCACACTCTAATGATAGTGACTCAAGTATTAGTTGTAGCTCCAAGAACTATGTTTTGCAGTCTTACTATGAAAAATATGAAGACTTGCTAGATTCAAATTTCCAAGATTTTATAGCACAAGAACTTCCTATTGGTTTGTGTGAGGTGCTGCCACATAATCTGAGTCTTGCTTTAAGACTCTCCATTTTGCATCGCAATCTGATAGGGAATGGTTCTCATCGTCATCTTACGTCGTCCTTTAGACTTAAGATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCACTGTGAGGTCATAGTCATTGAGAGACTGCCATCAGGGGTATTTGCCGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACGGCAATATAGCTGTCTTTGGAGATACAAATTTGGAATTGCCTTCTTTTCTTTCCAATTGTTCTGCTGTAGAGGTTCACATGGATGTTGGTCATGATCTCTTGCTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCCCTAGATGAAAGTGGCTATTGGGAAGTCAAATTTGGTACACCTGATTTCTTCATGCGTTGCAGTGTTGAGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGGTATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGAACATACCTTCTGGGATGAAGGCACATGCTCGAATTGTTTCTGTCTTCACTTTTATTGCTGCCTTAATTTCAGCCATCTTGATTGCAGTAACATCCATATTTTATTCAGACAACTCCAGCAAACGTTCAAAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

324

Amino Acids

36.05

Weight (kDa)

5.59

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 118 - 308 3.8e-22 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 641
AclI AACGTT 1 cut(s) 958
AclWI GGATC 2 cut(s) 137, 473
AcsI RAATTY 3 cut(s) 241, 547, 713
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 3 cut(s) 518, 721, 823
AfiI CCNNNNNNNGG 1 cut(s) 436
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 6 cut(s) 123, 240, 398, 494, 813, 963
AjnI CCWGG 1 cut(s) 790
AjuI GAANNNNNNNTTGG 4 cut(s) 258, 290, 699, 731
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 6 cut(s) 183, 418, 490, 530, 658, 774
AluI AGCT 6 cut(s) 183, 418, 490, 530, 658, 774
Alw26I GTCTC 2 cut(s) 9, 448
AlwI GGATC 2 cut(s) 137, 473
ApeKI GCWGC 2 cut(s) 292, 893
ApoI RAATTY 3 cut(s) 241, 547, 713
Asp700I GAANNNNTTC 1 cut(s) 871
AspS9I GGNCC 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 626
BaeI ACNNNNGTAYC 2 cut(s) 813, 846
BbsI GAAGAC 2 cut(s) 231, 871
BbvI GCAGC 2 cut(s) 279, 880
BccI CCATC 4 cut(s) 469, 653, 794, 917
BceAI ACGGC 1 cut(s) 535
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 9, 448
BfaI CTAG 2 cut(s) 233, 686
BfmI CTRYAG 2 cut(s) 114, 585
BfrI CTTAAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 2 cut(s) 293, 894
BlsI GCNGC 2 cut(s) 294, 895
Bme1390I CCNGG 1 cut(s) 792
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 792
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 231, 871
BpmI CTGGAG 1 cut(s) 934
BpuEI CTTGAG 2 cut(s) 151, 434
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 3 cut(s) 607, 855, 926
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 50, 296
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 279, 880
BseYI CCCAGC 1 cut(s) 622
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 9, 448
Bsp143I GATC 3 cut(s) 142, 478, 613
BspCNI CTCAG 2 cut(s) 49, 297
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 627
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 2 cut(s) 137, 473
BspTI CTTAAG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 142, 478, 613
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 434, 826
BstAFI CTTAAG 1 cut(s) 389
BstDEI CTNAG 3 cut(s) 36, 305, 972
BstF5I GGATG 3 cut(s) 607, 855, 926
BstKTI GATC 3 cut(s) 145, 481, 616
BstMAI GTCTC 2 cut(s) 9, 448
BstMBI GATC 3 cut(s) 142, 478, 613
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 671, 863
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 2 cut(s) 114, 585
BstV1I GCAGC 2 cut(s) 279, 880
BstV2I GAAGAC 2 cut(s) 231, 871
BsuI GTATCC 1 cut(s) 780
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 607, 855, 926
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 3 cut(s) 78, 430, 751
CciI TCATGA 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 626
CsiI ACCWGGT 1 cut(s) 790
Csp6I GTAC 3 cut(s) 517, 720, 822
CviAII CATG 5 cut(s) 598, 611, 668, 736, 860
CviJI RGCY 8 cut(s) 183, 418, 490, 530, 658, 699, 774, 908
CviKI_1 RGCY 8 cut(s) 183, 418, 490, 530, 658, 699, 774, 908
CviQI GTAC 3 cut(s) 517, 720, 822
DdeI CTNAG 3 cut(s) 36, 305, 972
DpnI GATC 3 cut(s) 144, 480, 615
DpnII GATC 3 cut(s) 142, 478, 613
Eco130I CCWWGG 1 cut(s) 19
Eco32I GATATC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 790
EcoRV GATATC 1 cut(s) 677
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 5 cut(s) 601, 614, 671, 739, 863
FatI CATG 5 cut(s) 597, 610, 667, 735, 859
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 2 cut(s) 293, 894
FokI GGATG 3 cut(s) 614, 862, 913
Fsp4HI GCNGC 2 cut(s) 293, 894
FspBI CTAG 2 cut(s) 233, 686
GluI GCNGC 2 cut(s) 293, 894
GsaI CCCAGC 1 cut(s) 626
GsuI CTGGAG 1 cut(s) 934
Hin1II CATG 5 cut(s) 601, 614, 671, 739, 863
HinfI GANTC 8 cut(s) 164, 236, 307, 321, 404, 638, 809, 968
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 4 cut(s) 517, 595, 642, 722
Hpy188I TCNGA 6 cut(s) 39, 306, 345, 630, 808, 943
Hpy188III TCNNGA 3 cut(s) 611, 832, 913
Hpy8I GTNNAC 4 cut(s) 517, 595, 642, 722
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 5 cut(s) 432, 512, 570, 847, 852
HpyCH4III ACNGT 2 cut(s) 434, 826
HpyCH4IV ACGT 2 cut(s) 374, 958
HpyCH4V TGCA 6 cut(s) 116, 202, 334, 671, 744, 920
HpyF3I CTNAG 3 cut(s) 36, 305, 972
HpySE526I ACGT 2 cut(s) 374, 958
Hsp92II CATG 5 cut(s) 601, 614, 671, 739, 863
Kzo9I GATC 3 cut(s) 142, 478, 613
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 9 cut(s) 84, 450, 608, 738, 777, 804, 817, 831, 964
Lsp1109I GCAGC 2 cut(s) 279, 880
LweI GCATC 1 cut(s) 343
MabI ACCWGGT 1 cut(s) 790
MaeI CTAG 2 cut(s) 233, 686
MaeII ACGT 2 cut(s) 374, 958
MaeIII GTNAC 3 cut(s) 161, 759, 922
MalI GATC 3 cut(s) 144, 480, 615
MboI GATC 3 cut(s) 142, 478, 613
MboII GAAGA 5 cut(s) 85, 102, 236, 724, 871
MfeI CAATTG 1 cut(s) 574
MluCI AATT 8 cut(s) 241, 547, 554, 574, 649, 713, 867, 900
MlyI GAGTC 4 cut(s) 158, 315, 316, 647
MnlI CCTC 6 cut(s) 33, 121, 280, 430, 583, 745
MroXI GAANNNNTTC 1 cut(s) 871
MseI TTAA 3 cut(s) 317, 390, 899
MslI CAYNNNNRTG 3 cut(s) 153, 432, 600
MspCI CTTAAG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 792
MunI CAATTG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 792
NdeII GATC 3 cut(s) 142, 478, 613
NlaIII CATG 5 cut(s) 601, 614, 671, 739, 863
NlaIV GGNNCC 1 cut(s) 627
NmuCI GTSAC 2 cut(s) 161, 759
NspI RCATGY 2 cut(s) 671, 863
OliI CACNNNNGTG 1 cut(s) 432
PagI TCATGA 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 871
PfeI GAWTC 4 cut(s) 236, 404, 809, 968
PkrI GCNGC 2 cut(s) 294, 895
PleI GAGTC 4 cut(s) 158, 315, 315, 646
PpsI GAGTC 4 cut(s) 158, 315, 315, 646
Psp1406I AACGTT 1 cut(s) 958
Psp6I CCWGG 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 622
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 626
PsrI GAACNNNNNNTAC 2 cut(s) 787, 819
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 3 cut(s) 518, 721, 823
RsaNI GTAC 3 cut(s) 517, 720, 822
RseI CAYNNNNRTG 3 cut(s) 153, 432, 600
SaqAI TTAA 3 cut(s) 317, 390, 899
SatI GCNGC 2 cut(s) 293, 894
Sau3AI GATC 3 cut(s) 142, 478, 613
Sau96I GGNCC 1 cut(s) 626
SchI GAGTC 4 cut(s) 158, 315, 316, 647
ScrFI CCNGG 1 cut(s) 792
SexAI ACCWGGT 1 cut(s) 790
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 2 cut(s) 114, 585
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 3 cut(s) 153, 432, 600
SmlI CTYRAG 3 cut(s) 166, 389, 413
SmoI CTYRAG 3 cut(s) 166, 389, 413
Sse9I AATT 8 cut(s) 241, 547, 554, 574, 649, 713, 867, 900
SspMI CTAG 2 cut(s) 233, 686
StyD4I CCNGG 1 cut(s) 790
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 434, 826
TaiI ACGT 2 cut(s) 377, 961
TaqI TCGA 1 cut(s) 865
TasI AATT 8 cut(s) 241, 547, 554, 574, 649, 713, 867, 900
TfiI GAWTC 4 cut(s) 236, 404, 809, 968
Tru1I TTAA 3 cut(s) 317, 390, 899
Tru9I TTAA 3 cut(s) 317, 390, 899
TscAI CASTG 3 cut(s) 78, 437, 751
TseFI GTSAC 2 cut(s) 161, 759
TseI GCWGC 2 cut(s) 292, 893
Tsp45I GTSAC 2 cut(s) 161, 759
TspDTI ATGAA 5 cut(s) 228, 237, 705, 724, 866
TspRI CASTG 3 cut(s) 78, 437, 751
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 3 cut(s) 241, 547, 713
XceI RCATGY 2 cut(s) 671, 863
XmiI GTMKAC 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 871
XspI CTAG 2 cut(s) 233, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.