Rh7BG251900

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007198
Physical Location & Seq
Forward (+)
22838256 .. 22841447
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG251900.1

Sequence Viewer

Length: 648 bp
ATGGCTTCTCTCTCAGAACAGAGGAATGGTTCTCATCGTCATCTTACGTCGTCCTTTAGACTTAAGATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCACTGTGAGGTCATAGTCATTGAGAGACTGCCATCTGGGGTATTTGCCGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACGGCAATATAGCTGTCTTTGGAGATACAAATTTGGAATTGCCTTCTTTTCTTTCCAATCGTTCTGCTGTAGAGGTTCACATGGATGTTGGTCATGATCTCTTGCTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTATTGGGAAGTCAAATTTGGTACACCTGATTTCTTCATGCGTTGCAGTGTTGTGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGATATTGATGGTTCCGATTCAACATTTGGTACGGTTGTCTGGAACATACCTTCTGGGATGAAGGCACATGCTCGAATTGTTTCCGTCTTCACTTTTATTGCTGCCTTAATTTCAGCCATCTTGATTGCTATAACATCCATATTTTATTCAGACAACTCCAGCAAACATTCAAAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

215

Amino Acids

23.91

Weight (kDa)

5.84

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 9 - 200 2.6e-23 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 314
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 220, 386
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 3 cut(s) 191, 394, 496
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 4 cut(s) 71, 167, 486, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 5 cut(s) 91, 163, 203, 331, 447
AluI AGCT 5 cut(s) 91, 163, 203, 331, 447
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 2 cut(s) 220, 386
Asp700I GAANNNNTTC 1 cut(s) 544
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 299
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BbsI GAAGAC 1 cut(s) 544
BbvI GCAGC 1 cut(s) 553
BccI CCATC 4 cut(s) 142, 326, 467, 590
BceAI ACGGC 1 cut(s) 208
BciVI GTATCC 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 300, 478
BpiI GAAGAC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 280, 528, 599
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 151, 286
BspCNI CTCAG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 300, 478
BspPI GGATC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 62
BssMI GATC 2 cut(s) 151, 286
Bst4CI ACNGT 2 cut(s) 107, 499
BstAFI CTTAAG 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 13, 645
BstF5I GGATG 3 cut(s) 280, 528, 599
BstKTI GATC 2 cut(s) 154, 289
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 151, 286
BstNSI RCATGY 2 cut(s) 344, 536
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 544
BsuI GTATCC 1 cut(s) 453
BtsCI GGATG 3 cut(s) 280, 528, 599
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 103, 424
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 190, 393, 495
CviAII CATG 5 cut(s) 271, 284, 341, 409, 533
CviJI RGCY 8 cut(s) 5, 91, 163, 203, 331, 372, 447, 581
CviKI_1 RGCY 8 cut(s) 5, 91, 163, 203, 331, 372, 447, 581
CviQI GTAC 3 cut(s) 190, 393, 495
DdeI CTNAG 2 cut(s) 13, 645
DpnI GATC 2 cut(s) 153, 288
DpnII GATC 2 cut(s) 151, 286
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 161
EcoRV GATATC 1 cut(s) 350
FaeI CATG 5 cut(s) 274, 287, 344, 412, 536
FatI CATG 5 cut(s) 270, 283, 340, 408, 532
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 3 cut(s) 287, 535, 586
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 567
GsaI CCCAGC 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 607
Hin1II CATG 5 cut(s) 274, 287, 344, 412, 536
HinfI GANTC 4 cut(s) 77, 311, 482, 641
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 4 cut(s) 190, 268, 315, 395
Hpy188I TCNGA 4 cut(s) 16, 303, 481, 616
Hpy188III TCNNGA 4 cut(s) 284, 359, 505, 586
Hpy8I GTNNAC 4 cut(s) 190, 268, 315, 395
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 5 cut(s) 105, 185, 243, 520, 525
HpyCH4III ACNGT 2 cut(s) 107, 499
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 344, 417
HpyF3I CTNAG 2 cut(s) 13, 645
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 5 cut(s) 274, 287, 344, 412, 536
Kzo9I GATC 2 cut(s) 151, 286
LpnPI CCDG 7 cut(s) 123, 281, 411, 477, 490, 504, 637
Lsp1109I GCAGC 1 cut(s) 553
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 432
MalI GATC 2 cut(s) 153, 288
MboI GATC 2 cut(s) 151, 286
MboII GAAGA 2 cut(s) 397, 544
MluCI AATT 6 cut(s) 220, 227, 322, 386, 540, 573
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 4 cut(s) 15, 103, 256, 366
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 2 cut(s) 63, 572
MslI CAYNNNNRTG 2 cut(s) 105, 273
MspCI CTTAAG 1 cut(s) 62
NdeII GATC 2 cut(s) 151, 286
NlaIII CATG 5 cut(s) 274, 287, 344, 412, 536
NlaIV GGNNCC 2 cut(s) 300, 478
NmuCI GTSAC 1 cut(s) 432
NspI RCATGY 2 cut(s) 344, 536
OliI CACNNNNGTG 1 cut(s) 105
PagI TCATGA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 3 cut(s) 77, 482, 641
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 300, 478
PspPI GGNCC 1 cut(s) 299
RsaI GTAC 3 cut(s) 191, 394, 496
RsaNI GTAC 3 cut(s) 190, 393, 495
RseI CAYNNNNRTG 2 cut(s) 105, 273
SaqAI TTAA 2 cut(s) 63, 572
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 2 cut(s) 151, 286
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 320
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 2 cut(s) 105, 273
SmlI CTYRAG 2 cut(s) 62, 86
SmoI CTYRAG 2 cut(s) 62, 86
Sse9I AATT 6 cut(s) 220, 227, 322, 386, 540, 573
SspMI CTAG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 107, 499
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 538
TasI AATT 6 cut(s) 220, 227, 322, 386, 540, 573
TfiI GAWTC 3 cut(s) 77, 482, 641
Tru1I TTAA 2 cut(s) 63, 572
Tru9I TTAA 2 cut(s) 63, 572
TscAI CASTG 2 cut(s) 110, 424
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 3 cut(s) 378, 397, 539
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 2 cut(s) 110, 424
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 2 cut(s) 220, 386
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 2 cut(s) 344, 536
XmiI GTMKAC 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.