Rw7G022650

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007198
Physical Location & Seq
Forward (+)
26743373 .. 26746598
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022650.1

Sequence Viewer

Length: 861 bp
ATGATTGGATCATCACAAGCAATAAAAGAGGAACTGCCAAATTTTTGCTGCCTAATGGCACAACATTTCAAACTGGATCTGAACGTGTTTGCTAGCTATGAAAAATATGAAGACCTACTAGATTCAAATTTCCAAGATTTTATAGCACAAGAACTTCCTATTGGTTTGTGTGAGGTGCTGCCACATAATCTGAGTCTTGCTTTAAGACTCTCCATTTTGCATCGCAATCTGATAGGGAATGGTTCTTATCGTCATCTTACGTCGTCCTTTAGACTTAAGATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCATTGTGAGGTCATAGTCATTGAGAGACTGCCACCTGGGGTATTTGCCTATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACGACAATATAGATGTCTTTGGAGATACAAATTTGGAATTGCCTTCTTTTCTTTCCAATCGTTCTGCTGTAGAGGTTCACATGGATGTTGGTCATGTTCTCTTTCTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTATTGGGAAGCCAAATTTGGTACACCTGATTTCTTCATGTGTTGCAGTGTTGAGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGATATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGAACATACCTTCTGGGATGAAGGTACATGCTCGAATTGTTTCTGTCTTCACTTTTATTGCTGCCTTAATTTCAGCTATCTTGATTGCTGTAACATCCATATTTTATTCAGACAACTCCATCAAACGTTCAAAGGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

286

Amino Acids

32.2

Weight (kDa)

5.31

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 91 - 270 1.4e-18 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 527
AclI AACGTT 1 cut(s) 844
AclWI GGATC 2 cut(s) 16, 84
AcsI RAATTY 4 cut(s) 40, 127, 433, 599
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 4 cut(s) 404, 607, 709, 744
AfiI CCNNNNNNNGG 1 cut(s) 322
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 6 cut(s) 70, 126, 284, 380, 699, 849
AjnI CCWGG 1 cut(s) 349
AjuI GAANNNNNNNTTGG 4 cut(s) 144, 176, 585, 617
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 6 cut(s) 96, 304, 376, 544, 660, 794
AluI AGCT 6 cut(s) 96, 304, 376, 544, 660, 794
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 2 cut(s) 16, 84
ApeKI GCWGC 3 cut(s) 48, 178, 779
ApoI RAATTY 4 cut(s) 40, 127, 433, 599
Asp700I GAANNNNTTC 1 cut(s) 757
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 92
AvaII GGWCC 1 cut(s) 512
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BbsI GAAGAC 2 cut(s) 117, 757
BbvI GCAGC 3 cut(s) 35, 165, 766
BccI CCATC 3 cut(s) 539, 680, 845
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 3 cut(s) 93, 119, 572
BfmI CTRYAG 1 cut(s) 471
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 666
BisI GCNGC 3 cut(s) 49, 179, 780
BlsI GCNGC 3 cut(s) 50, 180, 781
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 117, 757
BpuEI CTTGAG 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 3 cut(s) 493, 741, 812
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 35, 165, 766
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 8, 76
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 513
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 2 cut(s) 16, 84
BspTI CTTAAG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 2 cut(s) 8, 76
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 712
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 191, 858
BstF5I GGATG 3 cut(s) 493, 741, 812
BstKTI GATC 2 cut(s) 11, 79
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 2 cut(s) 8, 76
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 2 cut(s) 557, 749
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 3 cut(s) 35, 165, 766
BstV2I GAAGAC 2 cut(s) 117, 757
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 666
BtgZI GCGATG 1 cut(s) 206
BtsCI GGATG 3 cut(s) 493, 741, 812
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 4 cut(s) 403, 606, 708, 743
CviAII CATG 5 cut(s) 484, 497, 554, 622, 746
CviJI RGCY 8 cut(s) 96, 304, 376, 544, 585, 596, 660, 794
CviKI_1 RGCY 8 cut(s) 96, 304, 376, 544, 585, 596, 660, 794
CviQI GTAC 4 cut(s) 403, 606, 708, 743
DdeI CTNAG 2 cut(s) 191, 858
DpnI GATC 2 cut(s) 10, 78
DpnII GATC 2 cut(s) 8, 76
Eco32I GATATC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 1 cut(s) 563
FaeI CATG 5 cut(s) 487, 500, 557, 625, 749
FatI CATG 5 cut(s) 483, 496, 553, 621, 745
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 3 cut(s) 49, 179, 780
FokI GGATG 3 cut(s) 500, 748, 799
Fsp4HI GCNGC 3 cut(s) 49, 179, 780
FspBI CTAG 3 cut(s) 93, 119, 572
GluI GCNGC 3 cut(s) 49, 179, 780
Hin1II CATG 5 cut(s) 487, 500, 557, 625, 749
HinfI GANTC 7 cut(s) 122, 193, 207, 290, 524, 695, 854
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 4 cut(s) 403, 481, 528, 608
Hpy188I TCNGA 6 cut(s) 81, 192, 231, 516, 694, 829
Hpy188III TCNNGA 3 cut(s) 572, 718, 799
Hpy8I GTNNAC 4 cut(s) 403, 481, 528, 608
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 5 cut(s) 318, 398, 456, 733, 738
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 3 cut(s) 84, 260, 844
HpyCH4V TGCA 3 cut(s) 220, 557, 630
HpyF3I CTNAG 2 cut(s) 191, 858
HpySE526I ACGT 3 cut(s) 84, 260, 844
Hsp92II CATG 5 cut(s) 487, 500, 557, 625, 749
Kzo9I GATC 2 cut(s) 8, 76
LpnPI CCDG 8 cut(s) 59, 336, 363, 494, 624, 690, 703, 717
Lsp1109I GCAGC 3 cut(s) 35, 165, 766
LweI GCATC 1 cut(s) 229
MaeI CTAG 3 cut(s) 93, 119, 572
MaeII ACGT 3 cut(s) 84, 260, 844
MaeIII GTNAC 2 cut(s) 645, 808
MalI GATC 2 cut(s) 10, 78
MboI GATC 2 cut(s) 8, 76
MboII GAAGA 3 cut(s) 122, 610, 757
MflI RGATCY 1 cut(s) 76
MluCI AATT 8 cut(s) 40, 127, 433, 440, 535, 599, 753, 786
MlyI GAGTC 3 cut(s) 201, 202, 533
MnlI CCTC 6 cut(s) 22, 166, 316, 469, 579, 631
MroXI GAANNNNTTC 1 cut(s) 757
MseI TTAA 3 cut(s) 203, 276, 785
MslI CAYNNNNRTG 2 cut(s) 318, 486
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
NdeII GATC 2 cut(s) 8, 76
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 5 cut(s) 487, 500, 557, 625, 749
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 1 cut(s) 645
NspI RCATGY 2 cut(s) 557, 749
OliI CACNNNNGTG 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 757
PfeI GAWTC 4 cut(s) 122, 290, 695, 854
PkrI GCNGC 3 cut(s) 50, 180, 781
PleI GAGTC 3 cut(s) 201, 201, 532
PpsI GAGTC 3 cut(s) 201, 201, 532
Psp1406I AACGTT 1 cut(s) 844
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 512
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 4 cut(s) 404, 607, 709, 744
RsaNI GTAC 4 cut(s) 403, 606, 708, 743
RseI CAYNNNNRTG 2 cut(s) 318, 486
SaqAI TTAA 3 cut(s) 203, 276, 785
SatI GCNGC 3 cut(s) 49, 179, 780
Sau3AI GATC 2 cut(s) 8, 76
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 3 cut(s) 201, 202, 533
ScrFI CCNGG 1 cut(s) 351
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 2 cut(s) 318, 486
SmlI CTYRAG 2 cut(s) 275, 299
SmoI CTYRAG 2 cut(s) 275, 299
Sse9I AATT 8 cut(s) 40, 127, 433, 440, 535, 599, 753, 786
SspMI CTAG 3 cut(s) 93, 119, 572
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 3 cut(s) 87, 263, 847
TaqI TCGA 1 cut(s) 751
TasI AATT 8 cut(s) 40, 127, 433, 440, 535, 599, 753, 786
TfiI GAWTC 4 cut(s) 122, 290, 695, 854
Tru1I TTAA 3 cut(s) 203, 276, 785
Tru9I TTAA 3 cut(s) 203, 276, 785
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 3 cut(s) 48, 178, 779
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 5 cut(s) 114, 123, 591, 610, 752
TspRI CASTG 1 cut(s) 637
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 4 cut(s) 40, 127, 433, 599
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 2 cut(s) 557, 749
XmiI GTMKAC 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 757
XspI CTAG 3 cut(s) 93, 119, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.