Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007198

Physical Location & Seq

Genomic Coordinates Reverse (-)

3531652 .. 3535895

Gene Structure 4244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTGCTGGTCGTTGCTTGCACCCTTGAGCATTCTGTTTGAGTTGCTTGCTATTTTTGTTATGGAAACTCAGAGGCCTCTTCGCCTGCCCAATTCCTTGTTCGTTGGACTTGTCTTGGTATTCTTCTCTGGCATTGGTTTTTGCATCCATTCTTCTGCAGTTTTAAGCGAGGTGGGAAGCTGTGATCCAAACTATGATGATAGTGACTCAAAGATCAGTGCCTTTTGTAGTTTCAAGAAGTATATTATGCAATCTTATTATGAAAAATATGAAAACTTGTTAGATTCAGATTTCCAAGATTTTATAGGACGAGAACTTCCTTTTGGTATGTGTGAGGTGCTTCCCCATGATCTGAGTCTTGTGCTAAAACTCTCAATTTTGCATCGGAATCTGATAGGCCATGGTTCTCATCGTCATCTCACTTCATCCATCAGAGTTAATATCAAACCAGAGTCCATATCTGAGTTACCATTTCACCATTGTGAGGTCATAATCATTGAGAGACTGCCATCTGGGGTATTTGCAGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTATATAGCAATATCGCTGTATTTGGAGATACCAATTTAGAGTCTCCTTCATTTCTTTCCAATCGTTCTGCTGTCGAAGTTCACATGGATATTGGTCATAATCTCTTTCTGAGACACGCTGAAGAGTTTAACATCAACGTAGAGATTCCATTACATGCACGATATCCACCTCTTAATGAAAACGGCTATTGGGAAGTCAAGTTTGGTGTACCTGATTTGTTCATGCGTTGCAGTGTTGAGGGAAAGTCACATGATGAAAGCTGTTTATATAAGGTGTCAGAGATTACTGGTTCTAAATTAACATATGGTACAGTTGTCTGGAAAATACCTTCTGGGATGAAGGTGCATGCTGGAATTGTATCCATTTTCACTTTTGTTGCAGCCTTATTTTCAGCTATTTTAATTGCTGCTACATCCATATTTTATTCAGACATCAACTCGAGCAAACATTTGAAAGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-X

Protein Analysis

342

Amino Acids

38.38

Weight (kDa)

5.78

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46850 AT5G46850 AT5G46850
fragaria_vesca	FvH4_5g22760
malus_domestica	MD06G1038100.v1.1
prunus_persica	Prupe.5G030700_v2.0.a1 Prupe.5G030700_v2.0.a1
pyrus_communis	pycom06g03180
rosa_chinensis	RchiOBHm_Chr7g0211361
rosa_laevigata	RLG00000003006
rosa_multiflora	Rmu_sc0001226.1_g000005 Rmu_sc0002283.1_g000060 Rmu_sc0005514.1_g000015 Rmu_sc0019867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115290 Rroxscaffold_3G00247900
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh2CG320500 Rh7AG257800 Rh7BG251900 Rh7CG274300 Rh7DG264000 Rh7DG271700
rosa_wichuraiana	Rw7G022030 Rw7G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	179, 521
AcuI	CTGAAG	2 cut(s)	536, 702
AfaI	GTAC	2 cut(s)	771, 871
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	235, 542, 1015
AjuI	GAANNNNNNNTTGG	6 cut(s)	83, 115, 306, 338, 747, 779
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	180, 538, 822, 956
AluI	AGCT	4 cut(s)	180, 538, 822, 956
Alw26I	GTCTC	3 cut(s)	496, 609, 667
AlwI	GGATC	2 cut(s)	179, 521
Ama87I	CYCGRG	1 cut(s)	1000
AoxI	GGCC	2 cut(s)	74, 397
ApeKI	GCWGC	2 cut(s)	941, 968
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	1000
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BbvI	GCAGC	2 cut(s)	953, 955
BccI	CCATC	2 cut(s)	437, 517
BceAI	ACGGC	1 cut(s)	760
BciVI	GTATCC	1 cut(s)	931
BcoDI	GTCTC	3 cut(s)	496, 609, 667
BfmI	CTRYAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	931
BisI	GCNGC	2 cut(s)	942, 969
BlsI	GCNGC	2 cut(s)	943, 970
BmeT110I	CYCGRG	1 cut(s)	1000
BmsI	GCATC	2 cut(s)	153, 391
BpuEI	CTTGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	853
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	4 cut(s)	144, 425, 903, 974
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	4 cut(s)	83, 344, 453, 662
BseNI	ACTGG	1 cut(s)	853
BseXI	GCAGC	2 cut(s)	953, 955
BshFI	GGCC	2 cut(s)	76, 399
BsiHKCI	CYCGRG	1 cut(s)	1000
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	3 cut(s)	496, 609, 667
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	76, 399
BsoBI	CYCGRG	1 cut(s)	1000
Bsp143I	GATC	4 cut(s)	184, 213, 349, 526
Bsp19I	CCATGG	1 cut(s)	400
BspANI	GGCC	2 cut(s)	76, 399
BspCNI	CTCAG	4 cut(s)	82, 345, 454, 663
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	2 cut(s)	179, 521
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	4 cut(s)	184, 213, 349, 526
BssT1I	CCWWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	84, 678
BstC8I	GCNNGC	4 cut(s)	18, 48, 86, 909
BstDEI	CTNAG	4 cut(s)	69, 353, 462, 671
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	4 cut(s)	144, 425, 903, 974
BstKTI	GATC	4 cut(s)	187, 216, 352, 529
BstMAI	GTCTC	3 cut(s)	496, 609, 667
BstMBI	GATC	4 cut(s)	184, 213, 349, 526
BstNSI	RCATGY	2 cut(s)	719, 911
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	953, 955
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	931
BsuRI	GGCC	2 cut(s)	76, 399
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	144, 425, 903, 974
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	2 cut(s)	223, 799
Cac8I	GCNNGC	4 cut(s)	18, 48, 86, 909
Csp6I	GTAC	2 cut(s)	770, 870
CviAII	CATG	7 cut(s)	347, 401, 646, 716, 784, 812, 908
CviJI	RGCY	8 cut(s)	76, 180, 399, 538, 747, 822, 944, 956
CviKI_1	RGCY	8 cut(s)	76, 180, 399, 538, 747, 822, 944, 956
CviQI	GTAC	2 cut(s)	770, 870
DdeI	CTNAG	4 cut(s)	69, 353, 462, 671
DpnI	GATC	4 cut(s)	186, 215, 351, 528
DpnII	GATC	4 cut(s)	184, 213, 349, 526
Eam1104I	CTCTTC	2 cut(s)	84, 678
EarI	CTCTTC	2 cut(s)	84, 678
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	725
Eco57I	CTGAAG	2 cut(s)	536, 702
Eco88I	CYCGRG	1 cut(s)	1000
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	7 cut(s)	350, 404, 649, 719, 787, 815, 911
FatI	CATG	7 cut(s)	346, 400, 645, 715, 783, 811, 907
FauNDI	CATATG	1 cut(s)	865
Fnu4HI	GCNGC	2 cut(s)	942, 969
FokI	GGATG	4 cut(s)	131, 412, 910, 961
Fsp4HI	GCNGC	2 cut(s)	942, 969
GluI	GCNGC	2 cut(s)	942, 969
HaeIII	GGCC	2 cut(s)	76, 399
Hin1II	CATG	7 cut(s)	350, 404, 649, 719, 787, 815, 911
HinfI	GANTC	8 cut(s)	206, 284, 355, 388, 452, 602, 706, 1019
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	643, 770
Hpy188III	TCNNGA	2 cut(s)	235, 880
Hpy8I	GTNNAC	2 cut(s)	643, 770
HpyAV	CCTTC	4 cut(s)	560, 618, 895, 900
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	699
HpyF3I	CTNAG	4 cut(s)	69, 353, 462, 671
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	7 cut(s)	350, 404, 649, 719, 787, 815, 911
Kzo9I	GATC	4 cut(s)	184, 213, 349, 526
LpnPI	CCDG	9 cut(s)	98, 114, 462, 498, 786, 834, 865, 879, 897
Lsp1109I	GCAGC	2 cut(s)	953, 955
LweI	GCATC	2 cut(s)	153, 391
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	203, 465, 807
MalI	GATC	4 cut(s)	186, 215, 351, 528
MboI	GATC	4 cut(s)	184, 213, 349, 526
MboII	GAAGA	4 cut(s)	71, 115, 144, 695
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	6 cut(s)	91, 375, 595, 857, 915, 963
MlyI	GAGTC	4 cut(s)	200, 364, 461, 611
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	7 cut(s)	66, 87, 163, 328, 478, 741, 793
MseI	TTAA	7 cut(s)	164, 438, 690, 735, 860, 962, 1024
MslI	CAYNNNNRTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	400
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	4 cut(s)	184, 213, 349, 526
NlaIII	CATG	7 cut(s)	350, 404, 649, 719, 787, 815, 911
NmuCI	GTSAC	2 cut(s)	203, 807
NspI	RCATGY	2 cut(s)	719, 911
OliI	CACNNNNGTG	1 cut(s)	480
PaeI	GCATGC	1 cut(s)	911
PaeR7I	CTCGAG	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	76
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	284, 388, 706, 1019
PkrI	GCNGC	2 cut(s)	943, 970
PleI	GAGTC	4 cut(s)	200, 363, 460, 610
PpsI	GAGTC	4 cut(s)	200, 363, 460, 610
PspXI	VCTCGAGB	1 cut(s)	1000
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	2 cut(s)	771, 871
RsaNI	GTAC	2 cut(s)	770, 870
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	7 cut(s)	164, 438, 690, 735, 860, 962, 1024
SatI	GCNGC	2 cut(s)	942, 969
Sau3AI	GATC	4 cut(s)	184, 213, 349, 526
SchI	GAGTC	4 cut(s)	200, 364, 461, 611
SfaNI	GCATC	2 cut(s)	153, 391
SfcI	CTRYAG	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	1000
SlaI	CTCGAG	1 cut(s)	1000
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	25, 1000
SmoI	CTYRAG	2 cut(s)	25, 1000
SphI	GCATGC	1 cut(s)	911
Sse9I	AATT	6 cut(s)	91, 375, 595, 857, 915, 963
SseBI	AGGCCT	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	2 cut(s)	636, 1001
TasI	AATT	6 cut(s)	91, 375, 595, 857, 915, 963
TfiI	GAWTC	4 cut(s)	284, 388, 706, 1019
Tru1I	TTAA	7 cut(s)	164, 438, 690, 735, 860, 962, 1024
Tru9I	TTAA	7 cut(s)	164, 438, 690, 735, 860, 962, 1024
TscAI	CASTG	2 cut(s)	223, 799
TseFI	GTSAC	2 cut(s)	203, 807
TseI	GCWGC	2 cut(s)	941, 968
Tsp45I	GTSAC	2 cut(s)	203, 807
TspDTI	ATGAA	8 cut(s)	276, 285, 414, 600, 753, 772, 831, 914
TspRI	CASTG	2 cut(s)	223, 799
XceI	RCATGY	2 cut(s)	719, 911
XhoI	CTCGAG	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.