Rh2CG320500

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007198
Physical Location & Seq
Reverse (-)
41146238 .. 41161082
14845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG320500.1

Sequence Viewer

Length: 399 bp
ATGGATGTTGATCATGATCTCTTGTTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTATTGGGAAGTCAAATTCGGTACACCTGATTTCTTCATGCGTTGCGGTGTTGAGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGATATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGGACATACCTTCTGGGATGAAGGCACATGTTCGAATTGTTTCCGTCTACACTTTTATTGCTGCCTTCATTTCAGCCATCTTGATTGCTACATCAGTATATGCGATCTATGGTATTTTGCTTGGCGTGATATTTGAATCCGTTAAAATTCCCAATTATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

132

Amino Acids

14.67

Weight (kDa)

4.98

Isoelectric Point (pI)

22.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 12 - 111 3.8e-08 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 44, 282
AciI CCGC 1 cut(s) 147
AcsI RAATTY 2 cut(s) 116, 381
AfaI GTAC 2 cut(s) 124, 226
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 2 cut(s) 216, 371
AluBI AGCT 2 cut(s) 61, 177
AluI AGCT 2 cut(s) 61, 177
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 116, 381
Asp700I GAANNNNTTC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BbvI GCAGC 1 cut(s) 283
BccI CCATC 3 cut(s) 56, 197, 320
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 10
BfaI CTAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 268
BsaBI GATNNNNATC 2 cut(s) 9, 15
Bse8I GATNNNNATC 2 cut(s) 9, 15
BseGI GGATG 2 cut(s) 10, 258
BseJI GATNNNNATC 2 cut(s) 9, 15
BseXI GCAGC 1 cut(s) 283
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 268
Bsp143I GATC 3 cut(s) 10, 16, 339
BspACI CCGC 1 cut(s) 147
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 268
BssMI GATC 3 cut(s) 10, 16, 339
Bst4CI ACNGT 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 268
BstF5I GGATG 2 cut(s) 10, 258
BstKTI GATC 3 cut(s) 13, 19, 342
BstMBI GATC 3 cut(s) 10, 16, 339
BstNSI RCATGY 2 cut(s) 74, 266
BstV1I GCAGC 1 cut(s) 283
BsuI GTATCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 10, 258
CciI TCATGA 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 123, 225
CviAII CATG 4 cut(s) 14, 71, 139, 263
CviJI RGCY 4 cut(s) 61, 102, 177, 311
CviKI_1 RGCY 4 cut(s) 61, 102, 177, 311
CviQI GTAC 2 cut(s) 123, 225
DpnI GATC 3 cut(s) 12, 18, 341
DpnII GATC 3 cut(s) 10, 16, 339
Eco32I GATATC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 29
EcoRV GATATC 1 cut(s) 80
FaeI CATG 4 cut(s) 17, 74, 142, 266
FaqI GGGAC 1 cut(s) 251
FatI CATG 4 cut(s) 13, 70, 138, 262
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 2 cut(s) 44, 282
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 2 cut(s) 17, 265
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 297
Hin1II CATG 4 cut(s) 17, 74, 142, 266
HinfI GANTC 3 cut(s) 41, 212, 371
Hpy166II GTNNAC 3 cut(s) 45, 125, 283
Hpy188I TCNGA 2 cut(s) 33, 211
Hpy188III TCNNGA 3 cut(s) 14, 89, 316
Hpy8I GTNNAC 3 cut(s) 45, 125, 283
HpyAV CCTTC 3 cut(s) 250, 255, 310
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 74
Hsp92II CATG 4 cut(s) 17, 74, 142, 266
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 16, 339
LpnPI CCDG 4 cut(s) 141, 207, 220, 234
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 162
MalI GATC 3 cut(s) 12, 18, 341
MboI GATC 3 cut(s) 10, 16, 339
MboII GAAGA 1 cut(s) 127
MluCI AATT 5 cut(s) 52, 116, 270, 381, 388
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 96, 148
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 1 cut(s) 378
NdeII GATC 3 cut(s) 10, 16, 339
NlaIII CATG 4 cut(s) 17, 74, 142, 266
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 2 cut(s) 74, 266
NspV TTCGAA 1 cut(s) 268
PagI TCATGA 1 cut(s) 13
PciI ACATGT 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 212, 371
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PscI ACATGT 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 2 cut(s) 124, 226
RsaNI GTAC 2 cut(s) 123, 225
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 3 cut(s) 10, 16, 339
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 50
SetI ASST 5 cut(s) 63, 88, 130, 179, 247
SfuI TTCGAA 1 cut(s) 268
SinI GGWCC 1 cut(s) 29
Sse9I AATT 5 cut(s) 52, 116, 270, 381, 388
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 268
TasI AATT 5 cut(s) 52, 116, 270, 381, 388
TfiI GAWTC 2 cut(s) 212, 371
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 4 cut(s) 108, 127, 269, 292
TspGWI ACGGA 2 cut(s) 268, 364
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 2 cut(s) 116, 381
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 2 cut(s) 74, 266
XmiI GTMKAC 2 cut(s) 44, 282
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.