Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007198

Physical Location & Seq

Genomic Coordinates Forward (+)

3993766 .. 3995483

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03180.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGATCTGAATCTAACATGAAAGTAGAAAACATGAAGGCAAGAACATCCCAGCCATCAGCCACCGTTGCCTTCTCCAATTCCTTCCTTCTGGGATTTGTCTTGGTACTCTTCTCCGCCATTGGTTTCTGCACACATTCTTCTGCACATTATTCAACTCTTCAGGCAGGAACGTCTGATTCAAAATATGATGGTGGTGGCTCTAATATTAGTGCCTTTTCTAGATTCAACAAGTATATTATGCAGTCTTACTACGAAAAATATGAAAACTTGTTCGATTCAGATTTCGAAGACTTTGTAGCACAAGAGCTTCCTTTTGGTTTGTGTGAAGTGCTGCCGGAACATGATCTGAGTTTTGTTGTTAGACCCCCAATCTTGCACCACAATTTGATAGGCAGAGGTTCGCATCGTCATCTCACCTCATCCATTAGAGTTAACATCAAACCAGAGCCCATATATGAGCTACCAACTCACCATTGTGAGCTCATAATCGTTGAGAGACTGCCATCTGGGGTATTTGCGGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGCATATAGCGCTATAGCTGTGTTTGGAGATGCGAATTTGGAACTGCCTTCATTTCTTTCCAATCGTACCGCTGTTGAGGTTCACATGGATATTGGCCATAATTTCTTGCTGAGGCACGACAAAGAGTCTAACATCAACATAGAGCTTCCATTGCATGCACGATATCCACCTCTAGATGAAAGCGGCTATTGGGAAGTCAAATTTGGTATGCCGGATTTGTTCATGCGTTGTAGCATCGAGGGAACTTCACAAAATCAAAGCTGTTTGTATAAGATGCCAGAGATCAATGGTTCTGAATTAGGATACGCTAAACTTGTCTGGAAAATCCCTTCTGGGATGAAGGCGCATGCTGGAATCGTATCCACTCTCACGTTCGTTGCAGCCTTAATTTCGGCTATTGCAATTGCTGCTACATCCATTTTTCATTCAGGCGTTGCCTCCGGCAAACATTTGAAAGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-X

Protein Analysis

341

Amino Acids

37.8

Weight (kDa)

6.08

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46850 AT5G46850 AT5G46850
fragaria_vesca	FvH4_5g22760
malus_domestica	MD06G1038100.v1.1
prunus_persica	Prupe.5G030700_v2.0.a1 Prupe.5G030700_v2.0.a1
pyrus_communis	pycom06g03180
rosa_chinensis	RchiOBHm_Chr7g0211361
rosa_laevigata	RLG00000003006
rosa_multiflora	Rmu_sc0001226.1_g000005 Rmu_sc0002283.1_g000060 Rmu_sc0005514.1_g000015 Rmu_sc0019867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115290 Rroxscaffold_3G00247900
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh2CG320500 Rh7AG257800 Rh7BG251900 Rh7CG274300 Rh7DG264000 Rh7DG271700
rosa_wichuraiana	Rw7G022030 Rw7G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	117, 521, 627, 741
AclWI	GGATC	2 cut(s)	518, 531
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	2 cut(s)	592, 758
AcuI	CTGAAG	2 cut(s)	146, 533
AfaI	GTAC	2 cut(s)	108, 625
AfeI	AGCGCT	1 cut(s)	568
AgsI	TTSAA	5 cut(s)	156, 183, 229, 539, 1012
AhdI	GACNNNNNGTC	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	7 cut(s)	310, 463, 484, 535, 575, 703, 819
AluI	AGCT	7 cut(s)	310, 463, 484, 535, 575, 703, 819
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	518, 531
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	3 cut(s)	334, 938, 965
ApoI	RAATTY	2 cut(s)	592, 758
AspLEI	GCGC	2 cut(s)	569, 904
AsuHPI	GGTGA	2 cut(s)	409, 464
AsuII	TTCGAA	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	453, 486
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	486
BbvCI	CCTCAGC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	321, 950, 952
BccI	CCATC	3 cut(s)	64, 185, 514
BciVI	GTATCC	2 cut(s)	854, 928
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	222, 731
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	570
BfuI	GTATCC	2 cut(s)	854, 928
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	4 cut(s)	335, 742, 939, 966
BlsI	GCNGC	4 cut(s)	336, 743, 940, 967
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	525
BmsI	GCATC	4 cut(s)	415, 577, 801, 822
BpiI	GAAGAC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	707
Bse8I	GATNNNNATC	1 cut(s)	10
BseGI	GGATG	4 cut(s)	47, 422, 900, 971
BseJI	GATNNNNATC	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	2 cut(s)	341, 659
BseXI	GCAGC	3 cut(s)	321, 950, 952
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	2 cut(s)	115, 129
BshFI	GGCC	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	3 cut(s)	338, 770, 999
BsmAI	GTCTC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	453, 486
Bsp143I	GATC	4 cut(s)	5, 346, 523, 840
BspACI	CCGC	4 cut(s)	117, 521, 627, 741
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	2 cut(s)	342, 660
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	2 cut(s)	518, 531
BspT104I	TTCGAA	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	707
BssMI	GATC	4 cut(s)	5, 346, 523, 840
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	116, 165
BstAPI	GCANNNNNTGC	1 cut(s)	965
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	714, 906
BstDEI	CTNAG	2 cut(s)	350, 668
BstF5I	GGATG	4 cut(s)	47, 422, 900, 971
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	569, 904
BstKTI	GATC	4 cut(s)	8, 349, 526, 843
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	4 cut(s)	5, 346, 523, 840
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 566, 709, 965
BstNSI	RCATGY	2 cut(s)	716, 908
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	321, 950, 952
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	5, 523
BstYI	RGATCY	2 cut(s)	5, 523
BsuI	GTATCC	2 cut(s)	854, 928
BsuRI	GGCC	1 cut(s)	654
BtsCI	GGATG	4 cut(s)	47, 422, 900, 971
Cac8I	GCNNGC	2 cut(s)	714, 906
CfoI	GCGC	2 cut(s)	569, 904
Csp6I	GTAC	2 cut(s)	107, 624
CviAII	CATG	7 cut(s)	19, 34, 344, 643, 713, 781, 905
CviQI	GTAC	2 cut(s)	107, 624
DdeI	CTNAG	2 cut(s)	350, 668
DpnI	GATC	4 cut(s)	7, 348, 525, 842
DpnII	GATC	4 cut(s)	5, 346, 523, 840
DriI	GACNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	116, 165
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	2 cut(s)	116, 165
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	453, 486
Eco32I	GATATC	1 cut(s)	722
Eco47III	AGCGCT	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	146, 533
EcoICRI	GAGCTC	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	722
EcoT38I	GRGCYC	2 cut(s)	453, 486
FaeI	CATG	7 cut(s)	22, 37, 347, 646, 716, 784, 908
FatI	CATG	7 cut(s)	18, 33, 343, 642, 712, 780, 904
Fnu4HI	GCNGC	4 cut(s)	335, 742, 939, 966
FokI	GGATG	4 cut(s)	34, 409, 907, 958
FriOI	GRGCYC	2 cut(s)	453, 486
Fsp4HI	GCNGC	4 cut(s)	335, 742, 939, 966
FspBI	CTAG	2 cut(s)	222, 731
GlaI	GCGC	2 cut(s)	568, 903
GluI	GCNGC	4 cut(s)	335, 742, 939, 966
GsaI	CCCAGC	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	3 cut(s)	338, 770, 999
HhaI	GCGC	2 cut(s)	569, 904
Hin1II	CATG	7 cut(s)	22, 37, 347, 646, 716, 784, 908
Hin6I	GCGC	2 cut(s)	567, 902
HinP1I	GCGC	2 cut(s)	567, 902
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	7 cut(s)	11, 179, 225, 278, 683, 912, 1016
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	338, 770, 999
HphI	GGTGA	2 cut(s)	409, 464
Hpy166II	GTNNAC	2 cut(s)	436, 640
Hpy188I	TCNGA	5 cut(s)	10, 178, 283, 351, 853
Hpy188III	TCNNGA	3 cut(s)	222, 731, 877
Hpy8I	GTNNAC	2 cut(s)	436, 640
HpyAV	CCTTC	8 cut(s)	31, 82, 94, 98, 557, 615, 892, 897
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	173, 929
HpyCH4V	TGCA	9 cut(s)	132, 146, 244, 379, 560, 712, 716, 938, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 566, 709, 965
HpyF3I	CTNAG	2 cut(s)	350, 668
HpySE526I	ACGT	2 cut(s)	173, 929
Hsp92II	CATG	7 cut(s)	22, 37, 347, 646, 716, 784, 908
HspAI	GCGC	2 cut(s)	567, 902
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	5, 346, 523, 840
Lsp1109I	GCAGC	3 cut(s)	321, 950, 952
LweI	GCATC	4 cut(s)	415, 577, 801, 822
MaeI	CTAG	2 cut(s)	222, 731
MaeII	ACGT	2 cut(s)	173, 929
MalI	GATC	4 cut(s)	7, 348, 525, 842
MboI	GATC	4 cut(s)	5, 346, 523, 840
MboII	GAAGA	4 cut(s)	103, 132, 152, 302
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	2 cut(s)	5, 523
MhlI	GDGCHC	2 cut(s)	453, 486
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	8 cut(s)	79, 385, 592, 658, 758, 854, 945, 960
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	1 cut(s)	692
MnlI	CCTC	7 cut(s)	392, 430, 628, 663, 738, 790, 1006
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	3 cut(s)	435, 944, 1021
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	3 cut(s)	338, 770, 999
MunI	CAATTG	1 cut(s)	960
MwoI	GCNNNNNNNGC	4 cut(s)	68, 566, 709, 965
NdeII	GATC	4 cut(s)	5, 346, 523, 840
NlaIII	CATG	7 cut(s)	22, 37, 347, 646, 716, 784, 908
NlaIV	GGNNCC	1 cut(s)	525
NspI	RCATGY	2 cut(s)	716, 908
NspV	TTCGAA	1 cut(s)	288
OliI	CACNNNNGTG	1 cut(s)	477
PaeI	GCATGC	2 cut(s)	716, 908
PfeI	GAWTC	6 cut(s)	11, 179, 225, 278, 912, 1016
PkrI	GCNGC	4 cut(s)	336, 743, 940, 967
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
Psp124BI	GAGCTC	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	5, 523
RsaI	GTAC	2 cut(s)	108, 625
RsaNI	GTAC	2 cut(s)	107, 624
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	435, 944, 1021
SatI	GCNGC	4 cut(s)	335, 742, 939, 966
Sau3AI	GATC	4 cut(s)	5, 346, 523, 840
SchI	GAGTC	1 cut(s)	692
SduI	GDGCHC	2 cut(s)	453, 486
SfaNI	GCATC	4 cut(s)	415, 577, 801, 822
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	477
SphI	GCATGC	2 cut(s)	716, 908
Sse9I	AATT	8 cut(s)	79, 385, 592, 658, 758, 854, 945, 960
SsiI	CCGC	4 cut(s)	117, 521, 627, 741
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	222, 731
SstI	GAGCTC	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	176, 932
TaqI	TCGA	3 cut(s)	276, 288, 795
TasI	AATT	8 cut(s)	79, 385, 592, 658, 758, 854, 945, 960
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	6 cut(s)	11, 179, 225, 278, 912, 1016
Tru1I	TTAA	3 cut(s)	435, 944, 1021
Tru9I	TTAA	3 cut(s)	435, 944, 1021
TseI	GCWGC	3 cut(s)	334, 938, 965
TspDTI	ATGAA	8 cut(s)	35, 50, 279, 597, 750, 769, 911, 971
XapI	RAATTY	2 cut(s)	592, 758
XbaI	TCTAGA	2 cut(s)	221, 730
XceI	RCATGY	2 cut(s)	716, 908
XspI	CTAG	2 cut(s)	222, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.