FvH4_5g23900

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003697
Physical Location & Seq
Reverse (-)
15201172 .. 15205147
3976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23900.t2

Sequence Viewer

Length: 993 bp
ATGAGCCGGTCGTTGGTGGGCGGTGGAGGCCACGCGCCGCTTTTCACAGTGTCGCAGTGGGCGGAGATGGAGCATCAAGCCATGGTTTTCAAGTACCTCAAGGCCGGTCTGCCTGTTCCTCCCGAGCTCTTGGCCCCTATTCGCAGCAGCTTCAATCTCATGTACCCCGATTTCCTTCGTCACCCCTCTTTGACTTATGCTTCCTTCTGCGGGAAGAAAATAGACCCAGAGCCAGGGCGGTGCCGCAGGACAGATGGCAAGAAGTGGAGGTGCTCTAAGGATGCGCATCCAGACTCCAAGTATTGTGAGCGCCACATGAATCGTGGTCGCTACCGTTCAAGAAAGCTTGTGGAATCACAAACTGCCTCTCAAACTTTGTCAACTGTGGCATCCTCAGAGATAAGGACTGGGAGCCATAGCCACAGTGGGAGCTTCCAAAACATGCCTTTGCACTCGGCGGGAAACAGTGGAAGTCTATGCTTTGGAAGTGATGTGTCTCAGTTGAAGATGGAGCCTATACCCTATGGGATAGTGAAGCGTGGAAACAGGGTCCTCGATGGAGCAGAGGAACATAATTTTATGTCAGAAGCTTCAGGGAGTGCAAGATCTGTTGGGGTGGATAGTACTGTAGACAGTCCATGGCGTCTTATGACATCTCGAGTTCCCTCGAACTCCTCATCTGAACCTAGAGATGGTTGTTTTTTACTAAATAACAACTCCCAGCTGCAGACATTACAAGATAGTGAAGCTTTGACTGTAGATGCTGCTATGACCAAACAACAGCAACGGCAATATGTTGGTGGAGAGTTTGGCGTACTGAGATCAGTAAAACAGGAACAACATTCTCTTCAGCCTTTCTTTGATGAGTGGCCTAAATCAAGAGATCTGGGGTTTCATCACAATGATCCTCGGTCAACCAATAACGTATCAAACACAACTCAGCTGTCAATGTCTAACCTGATGGCTCCCTCTAATTTCTTCAAGGAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

331

Amino Acids

36.79

Weight (kDa)

9.12

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 15 - 48 2.7e-13 QLQ
WRC PF08879 76 - 118 4e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 35
AciI CCGC 7 cut(s) 21, 38, 62, 210, 238, 244, 458
AclWI GGATC 1 cut(s) 899
AcuI CTGAAG 2 cut(s) 576, 833
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 4 cut(s) 95, 164, 625, 816
AfeI AGCGCT 1 cut(s) 989
AfiI CCNNNNNNNGG 4 cut(s) 13, 210, 233, 692
AgsI TTSAA 5 cut(s) 91, 154, 339, 505, 982
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 8 cut(s) 127, 150, 346, 432, 590, 724, 749, 943
AluI AGCT 8 cut(s) 127, 150, 346, 432, 590, 724, 749, 943
Alw21I GWGCWC 2 cut(s) 129, 275
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 899
Ama87I CYCGRG 2 cut(s) 122, 657
Aor51HI AGCGCT 1 cut(s) 989
AoxI GGCC 4 cut(s) 28, 102, 132, 869
ApeKI GCWGC 4 cut(s) 144, 147, 724, 764
AspLEI GCGC 4 cut(s) 37, 286, 312, 990
AspS9I GGNCC 2 cut(s) 133, 550
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 2 cut(s) 122, 657
AvaII GGWCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 129, 275
BbvI GCAGC 4 cut(s) 156, 159, 711, 751
BccI CCATC 6 cut(s) 61, 248, 502, 551, 686, 955
BceAI ACGGC 1 cut(s) 803
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 3 cut(s) 627, 725, 756
BfoI RGCGCY 2 cut(s) 313, 991
BglII AGATCT 2 cut(s) 605, 883
BisI GCNGC 6 cut(s) 38, 145, 148, 244, 725, 765
BlsI GCNGC 6 cut(s) 39, 146, 149, 245, 726, 766
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 2 cut(s) 122, 657
BmgT120I GGNCC 2 cut(s) 133, 550
BmiI GGNNCC 6 cut(s) 135, 242, 413, 513, 551, 966
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 5 cut(s) 82, 271, 295, 398, 751
BmuI ACTGGG 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 643
BsaJI CCNNGG 4 cut(s) 81, 233, 638, 908
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 210, 233, 692
Bse118I RCCGGY 2 cut(s) 6, 104
Bse1I ACTGG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 81, 233, 638, 908
BseGI GGATG 3 cut(s) 286, 286, 389
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 13, 210, 233, 692
BseMII CTCAG 4 cut(s) 408, 512, 809, 953
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 4 cut(s) 156, 159, 711, 751
BseYI CCCAGC 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 4 cut(s) 30, 104, 134, 871
BshNI GGYRCC 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 129, 275
BsiHKCI CYCGRG 2 cut(s) 122, 657
BsiSI CCGG 2 cut(s) 7, 105
BslI CCNNNNNNNGG 4 cut(s) 13, 210, 233, 692
BsmAI GTCTC 1 cut(s) 501
BsnI GGCC 4 cut(s) 30, 104, 134, 871
BsoBI CYCGRG 2 cut(s) 122, 657
Bsp1286I GDGCHC 2 cut(s) 129, 275
Bsp143I GATC 4 cut(s) 605, 821, 883, 904
Bsp19I CCATGG 2 cut(s) 81, 638
BspACI CCGC 7 cut(s) 21, 38, 62, 210, 238, 244, 458
BspANI GGCC 4 cut(s) 30, 104, 134, 871
BspCNI CTCAG 4 cut(s) 407, 511, 810, 952
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 6 cut(s) 135, 242, 413, 513, 551, 966
BspMAI CTGCAG 1 cut(s) 729
BspPI GGATC 1 cut(s) 899
BspT107I GGYRCC 1 cut(s) 240
BsrFI RCCGGY 2 cut(s) 6, 104
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 2 cut(s) 6, 104
BssECI CCNNGG 4 cut(s) 81, 233, 638, 908
BssMI GATC 4 cut(s) 605, 821, 883, 904
BssNI GRCGYC 1 cut(s) 643
BssT1I CCWWGG 2 cut(s) 81, 638
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 8 cut(s) 49, 335, 385, 425, 467, 628, 635, 757
Bst6I CTCTTC 1 cut(s) 852
BstACI GRCGYC 1 cut(s) 643
BstDEI CTNAG 5 cut(s) 276, 394, 498, 818, 939
BstDSI CCRYGG 2 cut(s) 81, 638
BstF5I GGATG 3 cut(s) 286, 286, 389
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 2 cut(s) 313, 991
BstHHI GCGC 4 cut(s) 37, 286, 312, 990
BstKTI GATC 4 cut(s) 608, 824, 886, 907
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 4 cut(s) 605, 821, 883, 904
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 3 cut(s) 627, 725, 756
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 4 cut(s) 156, 159, 711, 751
BstX2I RGATCY 2 cut(s) 605, 883
BstYI RGATCY 2 cut(s) 605, 883
BsuRI GGCC 4 cut(s) 30, 104, 134, 871
BtgI CCRYGG 2 cut(s) 81, 638
BtsCI GGATG 3 cut(s) 286, 286, 389
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 4 cut(s) 54, 62, 430, 472
CfoI GCGC 4 cut(s) 37, 286, 312, 990
Cfr10I RCCGGY 2 cut(s) 6, 104
Cfr13I GGNCC 2 cut(s) 133, 550
CseI GACGC 1 cut(s) 632
Csp6I GTAC 4 cut(s) 94, 163, 624, 815
CviAII CATG 5 cut(s) 82, 160, 316, 442, 639
CviQI GTAC 4 cut(s) 94, 163, 624, 815
DdeI CTNAG 5 cut(s) 276, 394, 498, 818, 939
DpnI GATC 4 cut(s) 607, 823, 885, 906
DpnII GATC 4 cut(s) 605, 821, 883, 904
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 81, 638
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 550
Eco47III AGCGCT 1 cut(s) 989
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 576, 833
Eco88I CYCGRG 2 cut(s) 122, 657
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 81, 638
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 81, 638
FaeI CATG 5 cut(s) 85, 163, 319, 445, 642
FatI CATG 5 cut(s) 81, 159, 315, 441, 638
FauI CCCGC 2 cut(s) 203, 451
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 6 cut(s) 38, 145, 148, 244, 725, 765
FokI GGATG 3 cut(s) 273, 293, 376
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 6 cut(s) 38, 145, 148, 244, 725, 765
FspAI RTGCGCAY 1 cut(s) 285
FspBI CTAG 1 cut(s) 687
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 4 cut(s) 36, 285, 311, 989
GluI GCNGC 6 cut(s) 38, 145, 148, 244, 725, 765
GsaI CCCAGC 1 cut(s) 724
HaeII RGCGCY 2 cut(s) 313, 991
HaeIII GGCC 4 cut(s) 30, 104, 134, 871
HapII CCGG 2 cut(s) 7, 105
HgaI GACGC 1 cut(s) 632
HhaI GCGC 4 cut(s) 37, 286, 312, 990
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 5 cut(s) 85, 163, 319, 445, 642
Hin6I GCGC 4 cut(s) 35, 284, 310, 988
HinP1I GCGC 4 cut(s) 35, 284, 310, 988
HincII GTYRAC 2 cut(s) 381, 915
HindII GTYRAC 2 cut(s) 381, 915
HindIII AAGCTT 3 cut(s) 344, 588, 747
HinfI GANTC 3 cut(s) 293, 319, 353
HpaII CCGG 2 cut(s) 7, 105
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 3 cut(s) 381, 631, 915
Hpy188I TCNGA 3 cut(s) 397, 586, 682
Hpy188III TCNNGA 5 cut(s) 122, 290, 339, 657, 879
Hpy8I GTNNAC 3 cut(s) 381, 631, 915
HpyAV CCTTC 2 cut(s) 185, 214
HpyCH4III ACNGT 8 cut(s) 49, 335, 385, 425, 467, 628, 635, 757
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 3 cut(s) 451, 602, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 5 cut(s) 276, 394, 498, 818, 939
HpySE526I ACGT 1 cut(s) 924
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 5 cut(s) 85, 163, 319, 445, 642
HspAI GCGC 4 cut(s) 35, 284, 310, 988
Kzo9I GATC 4 cut(s) 605, 821, 883, 904
LmnI GCTCC 7 cut(s) 70, 411, 429, 511, 560, 970, 985
Lsp1109I GCAGC 4 cut(s) 156, 159, 711, 751
LweI GCATC 5 cut(s) 82, 271, 295, 398, 751
MaeI CTAG 1 cut(s) 687
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 607, 823, 885, 906
MboI GATC 4 cut(s) 605, 821, 883, 904
MboII GAAGA 4 cut(s) 226, 517, 839, 970
MflI RGATCY 2 cut(s) 605, 883
MhlI GDGCHC 2 cut(s) 129, 275
MluCI AATT 2 cut(s) 574, 973
MlyI GAGTC 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 900
MspA1I CMGCKG 2 cut(s) 724, 943
MspI CCGG 2 cut(s) 7, 105
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 27
NcoI CCATGG 2 cut(s) 81, 638
NdeII GATC 4 cut(s) 605, 821, 883, 904
NlaIII CATG 5 cut(s) 85, 163, 319, 445, 642
NlaIV GGNNCC 6 cut(s) 135, 242, 413, 513, 551, 966
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 179
NsbI TGCGCA 1 cut(s) 285
NspI RCATGY 1 cut(s) 445
PaeR7I CTCGAG 1 cut(s) 657
PfeI GAWTC 2 cut(s) 319, 353
PkrI GCNGC 6 cut(s) 39, 146, 149, 245, 726, 766
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 720
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 6 cut(s) 135, 242, 413, 513, 551, 966
PspPI GGNCC 2 cut(s) 133, 550
PspPPI RGGWCCY 1 cut(s) 550
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 2 cut(s) 605, 883
PvuII CAGCTG 2 cut(s) 724, 943
RsaI GTAC 4 cut(s) 95, 164, 625, 816
RsaNI GTAC 4 cut(s) 94, 163, 624, 815
RseI CAYNNNNRTG 1 cut(s) 900
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 6 cut(s) 38, 145, 148, 244, 725, 765
Sau3AI GATC 4 cut(s) 605, 821, 883, 904
Sau96I GGNCC 2 cut(s) 133, 550
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 129, 275
SfaNI GCATC 5 cut(s) 82, 271, 295, 398, 751
SfcI CTRYAG 3 cut(s) 627, 725, 756
Sfr274I CTCGAG 1 cut(s) 657
SinI GGWCC 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 98, 657
SmoI CTYRAG 2 cut(s) 98, 657
Sse9I AATT 2 cut(s) 574, 973
SsiI CCGC 7 cut(s) 21, 38, 62, 210, 238, 244, 458
SspMI CTAG 1 cut(s) 687
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 2 cut(s) 81, 638
TaaI ACNGT 8 cut(s) 49, 335, 385, 425, 467, 628, 635, 757
TaiI ACGT 1 cut(s) 927
TaqI TCGA 3 cut(s) 555, 658, 668
TaqII GACCGA 1 cut(s) 900
TasI AATT 2 cut(s) 574, 973
TatI WGTACW 1 cut(s) 623
TauI GCSGC 2 cut(s) 40, 246
TfiI GAWTC 2 cut(s) 319, 353
TscAI CASTG 4 cut(s) 54, 62, 430, 472
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 4 cut(s) 144, 147, 724, 764
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 332, 884
TspRI CASTG 4 cut(s) 54, 62, 430, 472
VpaK11BI GGWCC 1 cut(s) 550
XceI RCATGY 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 2 cut(s) 320, 422
XhoI CTCGAG 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 1 cut(s) 687
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.