Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Forward (+)

40268174 .. 40271930

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGCCGGTCGTTGGTGGGCGGTGGAGGTCACGCGCCGCTTTTCACAGTGTCGCAGTGGGCGGAGATGGAGCATCAAGCCTTGGTTTTCAAGTATCTCAAGGCCGGGCTGCCTGTTCCTCCGGACCTCTTGGCCCCTATTCGCAACAGCTTCAACCTCATCTACCCCGATTTCCTGCGTCACCCCGCCTCTTTGACTTATGCTTCCTTCTGTGGGAAGAAAATAGATCCGGAGCCAGGGAGGTGCCGGAGGACAGATGGCAAGAAGTGGAGGTGCTCTAAAGATGCACATCCAGACTCCAAGTATTGTGAGCGGCACATGAATCGTGGTCGCTACCGTTCAAGAAAGCTTGTGGAATCACAAACTGCTTCTCAATCTTTGTCAACTGTGGCATCGTCAGACATAAGGACTGGGAGCCGTAGCCACAGTGGGAGCTTCCAAAACATGCCCTTGCACTCACCAGGAAATAGTGGAAGTCTATGCTTTGGAAGTGATGTATCTCAGTTGAAGATGGAGCCTATACCCTACGGGATAGTGAAGCGTGGAAACAGGGTCCTCGATGGAGCAGAGGAGTATAATTTTATGCCAGAAGCTTCAGGGAGTGCAAGATCTGCTGGGTTGGATAGTACTATAGACAGTCCATGGCGTCTTATGACATCTCAAGTTCCCTTGAACTCCTCAACGGAACCTAGAAATGGTTCTTTTTTGCTAAACAACTCCCAGCTGCAGACATTGCAAGATAGCGAACCATTGACTGTTGATGCTGCTATGACCAAACAACAGCAACGGCAATATGTTGGTGGAGAGTTTGGCGTACTCAGATCTCTAAAACAGGAACAGCATTCTCTTCAGCCTTTCTTTGATGATTTGCCTAAATCAAGAGATCTGGGGTTCCATCACAACGATCCTAGATCAACCAATAACTTATCAAACACAACTCAGCTGTCAATGTCTAACCTGATGGCTCCCTCTAATTTCTTCAAGGAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

331

Amino Acids

36.74

Weight (kDa)

9.28

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	15 - 48	1.4e-12	QLQ
WRC	PF08879	77 - 119	4e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccBSI	CCGCTC	1 cut(s)	313
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	2 cut(s)	121, 229
AciI	CCGC	5 cut(s)	21, 38, 62, 186, 313
AclWI	GGATC	2 cut(s)	221, 899
AcuI	CTGAAG	2 cut(s)	579, 833
AcyI	GRCGYC	1 cut(s)	646
AfaI	GTAC	2 cut(s)	628, 816
AfiI	CCNNNNNNNGG	4 cut(s)	13, 213, 236, 695
AgsI	TTSAA	6 cut(s)	91, 154, 342, 508, 673, 982
AjnI	CCWGG	2 cut(s)	235, 460
AluBI	AGCT	6 cut(s)	150, 349, 435, 593, 724, 943
AluI	AGCT	6 cut(s)	150, 349, 435, 593, 724, 943
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	221, 899
Aor13HI	TCCGGA	2 cut(s)	121, 229
AoxI	GGCC	2 cut(s)	102, 132
ApeKI	GCWGC	3 cut(s)	109, 724, 764
Asp700I	GAANNNNTTC	1 cut(s)	697
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	124, 133, 553
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	173, 450
AvaII	GGWCC	2 cut(s)	124, 553
BanI	GGYRCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	96, 711, 751
BccI	CCATC	6 cut(s)	61, 251, 505, 554, 903, 955
BceAI	ACGGC	2 cut(s)	402, 803
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	237, 462
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	2 cut(s)	690, 909
BfmI	CTRYAG	2 cut(s)	630, 725
BglII	AGATCT	3 cut(s)	608, 821, 883
BisI	GCNGC	5 cut(s)	38, 110, 314, 725, 765
BlsI	GCNGC	5 cut(s)	39, 111, 315, 726, 766
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	3 cut(s)	106, 237, 462
Bme18I	GGWCC	2 cut(s)	124, 553
BmgT120I	GGNCC	3 cut(s)	124, 133, 553
BmiI	GGNNCC	9 cut(s)	135, 234, 245, 416, 516, 554, 687, 893, 966
BmrFI	CCNGG	3 cut(s)	106, 237, 462
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	4 cut(s)	82, 274, 401, 751
BmuI	ACTGGG	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	83, 645
BpuMI	CCSGG	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	646
BsaJI	CCNNGG	3 cut(s)	81, 236, 641
BsaWI	WCCGGW	2 cut(s)	121, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 213, 236, 695
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	288
BseAI	TCCGGA	2 cut(s)	121, 229
BseBI	CCWGG	2 cut(s)	237, 462
BseDI	CCNNGG	3 cut(s)	81, 236, 641
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	13, 213, 236, 695
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	3 cut(s)	515, 832, 953
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	584, 667
BseXI	GCAGC	3 cut(s)	96, 711, 751
BseYI	CCCAGC	2 cut(s)	614, 720
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	104, 134
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	7, 105, 122, 230, 247
BslI	CCNNNNNNNGG	4 cut(s)	13, 213, 236, 695
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	2 cut(s)	104, 134
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp13I	TCCGGA	2 cut(s)	121, 229
Bsp143I	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	5 cut(s)	21, 38, 62, 186, 313
BspANI	GGCC	2 cut(s)	104, 134
BspCNI	CTCAG	3 cut(s)	514, 831, 952
BspEI	TCCGGA	2 cut(s)	121, 229
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	9 cut(s)	135, 234, 245, 416, 516, 554, 687, 893, 966
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	2 cut(s)	221, 899
BspT107I	GGYRCC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	81, 236, 641
BssMI	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
BssNI	GRCGYC	1 cut(s)	646
BssT1I	CCWWGG	2 cut(s)	81, 641
Bst2UI	CCWGG	2 cut(s)	237, 462
Bst4CI	ACNGT	6 cut(s)	49, 338, 388, 428, 638, 757
Bst6I	CTCTTC	1 cut(s)	852
BstACI	GRCGYC	1 cut(s)	646
BstAPI	GCANNNNNTGC	2 cut(s)	611, 733
BstDEI	CTNAG	3 cut(s)	501, 818, 939
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	6 cut(s)	229, 611, 824, 886, 907, 914
BstMBI	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 733
BstNI	CCWGG	2 cut(s)	237, 462
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	104, 235, 460
BstSFI	CTRYAG	2 cut(s)	630, 725
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	96, 711, 751
BstX2I	RGATCY	4 cut(s)	226, 608, 821, 883
BstYI	RGATCY	4 cut(s)	226, 608, 821, 883
BsuRI	GGCC	2 cut(s)	104, 134
BtgI	CCRYGG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	3 cut(s)	54, 62, 433
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	124, 133, 553
CseI	GACGC	2 cut(s)	167, 635
Csp6I	GTAC	2 cut(s)	627, 815
CviAII	CATG	3 cut(s)	319, 445, 642
CviQI	GTAC	2 cut(s)	627, 815
DdeI	CTNAG	3 cut(s)	501, 818, 939
DpnI	GATC	6 cut(s)	228, 610, 823, 885, 906, 913
DpnII	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	81, 641
Eco47I	GGWCC	2 cut(s)	124, 553
Eco57I	CTGAAG	2 cut(s)	579, 833
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	235, 460
EcoT14I	CCWWGG	2 cut(s)	81, 641
ErhI	CCWWGG	2 cut(s)	81, 641
FaeI	CATG	3 cut(s)	322, 448, 645
FatI	CATG	3 cut(s)	318, 444, 641
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	5 cut(s)	38, 110, 314, 725, 765
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	5 cut(s)	38, 110, 314, 725, 765
FspBI	CTAG	2 cut(s)	690, 909
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	5 cut(s)	38, 110, 314, 725, 765
GsaI	CCCAGC	2 cut(s)	618, 724
HaeIII	GGCC	2 cut(s)	104, 134
HapII	CCGG	5 cut(s)	7, 105, 122, 230, 247
HgaI	GACGC	2 cut(s)	167, 635
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	3 cut(s)	322, 448, 645
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	2 cut(s)	347, 591
HinfI	GANTC	3 cut(s)	296, 322, 356
HpaII	CCGG	5 cut(s)	7, 105, 122, 230, 247
HphI	GGTGA	2 cut(s)	173, 450
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	2 cut(s)	400, 821
Hpy188III	TCNNGA	5 cut(s)	122, 230, 293, 342, 879
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	6 cut(s)	49, 338, 388, 428, 638, 757
HpyCH4V	TGCA	5 cut(s)	287, 454, 605, 727, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 733
HpyF3I	CTNAG	3 cut(s)	501, 818, 939
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	3 cut(s)	322, 448, 645
HspAI	GCGC	1 cut(s)	35
Kpn2I	TCCGGA	2 cut(s)	121, 229
Kzo9I	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
LmnI	GCTCC	8 cut(s)	70, 232, 414, 432, 514, 563, 970, 985
Lsp1109I	GCAGC	3 cut(s)	96, 711, 751
LweI	GCATC	4 cut(s)	82, 274, 401, 751
MaeI	CTAG	2 cut(s)	690, 909
MaeIII	GTNAC	2 cut(s)	29, 179
MalI	GATC	6 cut(s)	228, 610, 823, 885, 906, 913
MbiI	CCGCTC	1 cut(s)	313
MboI	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
MboII	GAAGA	4 cut(s)	229, 520, 839, 970
MflI	RGATCY	4 cut(s)	226, 608, 821, 883
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	577, 973
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	600
MroI	TCCGGA	2 cut(s)	121, 229
MroXI	GAANNNNTTC	1 cut(s)	697
MspA1I	CMGCKG	2 cut(s)	724, 943
MspI	CCGG	5 cut(s)	7, 105, 122, 230, 247
MspR9I	CCNGG	3 cut(s)	106, 237, 462
Mva1269I	GAATGC	1 cut(s)	841
MvaI	CCWGG	2 cut(s)	237, 462
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	611, 733
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
NlaIII	CATG	3 cut(s)	322, 448, 645
NlaIV	GGNNCC	9 cut(s)	135, 234, 245, 416, 516, 554, 687, 893, 966
NmuCI	GTSAC	2 cut(s)	29, 179
NspI	RCATGY	1 cut(s)	448
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	2 cut(s)	322, 356
PkrI	GCNGC	5 cut(s)	39, 111, 315, 726, 766
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	235, 460
PspFI	CCCAGC	2 cut(s)	614, 720
PspGI	CCWGG	2 cut(s)	235, 460
PspN4I	GGNNCC	9 cut(s)	135, 234, 245, 416, 516, 554, 687, 893, 966
PspPI	GGNCC	3 cut(s)	124, 133, 553
PspPPI	RGGWCCY	1 cut(s)	553
PstI	CTGCAG	1 cut(s)	729
PsuI	RGATCY	4 cut(s)	226, 608, 821, 883
PvuII	CAGCTG	2 cut(s)	724, 943
RsaI	GTAC	2 cut(s)	628, 816
RsaNI	GTAC	2 cut(s)	627, 815
SatI	GCNGC	5 cut(s)	38, 110, 314, 725, 765
Sau3AI	GATC	6 cut(s)	226, 608, 821, 883, 904, 911
Sau96I	GGNCC	3 cut(s)	124, 133, 553
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	106, 237, 462
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	4 cut(s)	82, 274, 401, 751
SfcI	CTRYAG	2 cut(s)	630, 725
SinI	GGWCC	2 cut(s)	124, 553
SmlI	CTYRAG	2 cut(s)	98, 660
SmoI	CTYRAG	2 cut(s)	98, 660
Sse9I	AATT	2 cut(s)	577, 973
SsiI	CCGC	5 cut(s)	21, 38, 62, 186, 313
SspMI	CTAG	2 cut(s)	690, 909
StyD4I	CCNGG	3 cut(s)	104, 235, 460
StyI	CCWWGG	2 cut(s)	81, 641
TaaI	ACNGT	6 cut(s)	49, 338, 388, 428, 638, 757
TaqI	TCGA	1 cut(s)	558
TasI	AATT	2 cut(s)	577, 973
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	2 cut(s)	40, 316
TfiI	GAWTC	2 cut(s)	322, 356
TscAI	CASTG	3 cut(s)	54, 62, 433
TseFI	GTSAC	2 cut(s)	29, 179
TseI	GCWGC	3 cut(s)	109, 724, 764
Tsp45I	GTSAC	2 cut(s)	29, 179
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	3 cut(s)	54, 62, 433
VpaK11BI	GGWCC	2 cut(s)	124, 553
XceI	RCATGY	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	2 cut(s)	690, 909
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.