Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Reverse (-)

30235010 .. 30239972

Gene Structure 4963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G329200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAATACTTGTGCTACTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGGGCTGCTGGGATGACGGGAATGAGGTCACCTTTCACAGTGTCTCAGTGGCAAGAGCTGGAGCATCAGGCTCTGATCTTCAAGTATATGATGGCGGGCATGCCCGTGCCTCCTGATCTCGTGCTTCCTATTCAGAAGAGTTTTGAGTCCATTTCTCAAAGATTCTTCCACCATCCTACCATGGGTTATTGTTCCTTCTACGGGAAGAAGGTGGACCCTGAACCGGGACGCTGCAGAAGGACTGACGGAAAGAAGTGGAGGTGCTCCAAGGATGCATACCCGGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACCATGACACAGTCATCGTCCACTGTGACATCATTGACTGTCACTGCGAGCAGCAGTGGAACTGGGAGCTTCCAGAACCTTCCACTGAATGCCTTTGGTAACACCCAAGGAACTAGTTCTGGAACCAATCAGTCTCATTATCAGATAGACTCCATTCCTTTTGGAATCCCAAACAAAGATTATAGGTATCTTCAAGGACTTAAACCCGAGATTGGTGAGCATAGTTTCTTGTCTGATGCTTCAGGAAGCAACAGGGGTCTCCAGATGGACTCACCACTAGACAGCACATGGCCTCTGATGCCATCCAGAGTTGGCTCATTTCCCGCATCAAAATCGGGTGATGGCTCCATTTTGCATCATGATTATCCACAGCATTCATTTTTCAATAATGCATTCCCCTCAGAATCTGTGAAACAGGAAGGTCAATCTCTCCGACCTTTCTTTGATGAGTGGCCTAAAGGCAGGGATTCCTGGTCTGGTCTTGAGGATGAGAGATCCAACCAGACCTCATTCTCTACCACCCAGCTCTCAATATCAATTCCAATGACTTCATCTGACATCTCTGCAACAAGTTCTCGATCCCCACATGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

332

Amino Acids

36.23

Weight (kDa)

8.23

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	143, 367, 723
AclWI	GGATC	2 cut(s)	888, 972
AcoI	YGGCCR	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	5 cut(s)	230, 249, 271, 272, 611
AgsI	TTSAA	4 cut(s)	130, 378, 593, 784
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	869
AluBI	AGCT	3 cut(s)	106, 468, 925
AluI	AGCT	3 cut(s)	106, 468, 925
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	3 cut(s)	96, 537, 662
AlwI	GGATC	2 cut(s)	888, 972
AlwNI	CAGNNNCTG	2 cut(s)	121, 806
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	3 cut(s)	364, 689, 851
ApeKI	GCWGC	3 cut(s)	53, 279, 450
Asp700I	GAANNNNTTC	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	2 cut(s)	273, 329
AsuHPI	GGTGA	4 cut(s)	69, 626, 663, 749
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	40, 266, 462
BccI	CCATC	5 cut(s)	133, 228, 658, 709, 734
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	1 cut(s)	871
BcnI	CCSGG	2 cut(s)	273, 329
BcoDI	GTCTC	3 cut(s)	96, 537, 662
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	2 cut(s)	513, 677
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	4 cut(s)	54, 280, 367, 451
BlsI	GCNGC	4 cut(s)	55, 281, 368, 452
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	3 cut(s)	273, 329, 871
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	264, 523, 745
BmrFI	CCNGG	3 cut(s)	273, 329, 871
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	6 cut(s)	121, 310, 625, 687, 734, 763
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	3 cut(s)	39, 128, 644
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	2 cut(s)	273, 329
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	4 cut(s)	228, 315, 361, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	230, 249, 271, 272, 611
Bse1I	ACTGG	2 cut(s)	22, 466
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	4 cut(s)	228, 315, 361, 505
BseGI	GGATG	5 cut(s)	66, 220, 325, 701, 892
BseLI	CCNNNNNNNGG	5 cut(s)	230, 249, 271, 272, 611
BseMII	CTCAG	2 cut(s)	107, 813
BseNI	ACTGG	2 cut(s)	22, 466
BseXI	GCAGC	3 cut(s)	40, 266, 462
BseYI	CCCAGC	2 cut(s)	56, 921
BshFI	GGCC	3 cut(s)	366, 691, 853
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	272, 329
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	5 cut(s)	230, 249, 271, 272, 611
BsmAI	GTCTC	3 cut(s)	96, 537, 662
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	3 cut(s)	493, 772, 791
BsnI	GGCC	3 cut(s)	366, 691, 853
Bso31I	GGTCTC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	4 cut(s)	123, 163, 893, 977
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	3 cut(s)	143, 367, 723
BspANI	GGCC	3 cut(s)	366, 691, 853
BspCNI	CTCAG	2 cut(s)	106, 812
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	264, 523, 745
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	2 cut(s)	888, 972
BspTNI	GGTCTC	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	22, 466
BssECI	CCNNGG	4 cut(s)	228, 315, 361, 505
BssMI	GATC	4 cut(s)	123, 163, 893, 977
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	3 cut(s)	228, 315, 505
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	7 cut(s)	88, 344, 362, 374, 411, 424, 439
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	145, 149, 448
BstDEI	CTNAG	2 cut(s)	93, 799
BstDSI	CCRYGG	2 cut(s)	228, 361
BstEII	GGTNACC	1 cut(s)	75
BstF5I	GGATG	5 cut(s)	66, 220, 325, 701, 892
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	126, 166, 896, 980
BstMAI	GTCTC	3 cut(s)	96, 537, 662
BstMBI	GATC	4 cut(s)	123, 163, 893, 977
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 697
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	2 cut(s)	151, 358
BstPI	GGTNACC	1 cut(s)	75
BstSCI	CCNGG	3 cut(s)	271, 327, 869
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	40, 266, 462
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	3 cut(s)	366, 691, 853
BtgI	CCRYGG	2 cut(s)	228, 361
BtsCI	GGATG	5 cut(s)	66, 220, 325, 701, 892
BtsI	GCAGTG	2 cut(s)	441, 460
BtsIMutI	CAGTG	6 cut(s)	93, 101, 420, 441, 460, 482
Cac8I	GCNNGC	3 cut(s)	145, 149, 448
CaiI	CAGNNNCTG	2 cut(s)	121, 806
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	7 cut(s)	148, 229, 355, 403, 687, 758, 986
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	93, 799
DpnI	GATC	4 cut(s)	125, 165, 895, 979
DpnII	GATC	4 cut(s)	123, 163, 893, 977
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	3 cut(s)	228, 315, 505
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	3 cut(s)	228, 315, 505
EcoT22I	ATGCAT	2 cut(s)	325, 793
ErhI	CCWWGG	3 cut(s)	228, 315, 505
FaeI	CATG	7 cut(s)	151, 232, 358, 406, 690, 761, 989
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	7 cut(s)	147, 228, 354, 402, 686, 757, 985
FauI	CCCGC	2 cut(s)	136, 730
Fnu4HI	GCNGC	4 cut(s)	54, 280, 367, 451
FokI	GGATG	5 cut(s)	73, 207, 332, 688, 899
Fsp4HI	GCNGC	4 cut(s)	54, 280, 367, 451
FspBI	CTAG	2 cut(s)	513, 677
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	4 cut(s)	54, 280, 367, 451
GsaI	CCCAGC	2 cut(s)	60, 925
GsuI	CTGGAG	3 cut(s)	39, 128, 644
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	366, 691, 853
HapII	CCGG	2 cut(s)	272, 329
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	7 cut(s)	151, 232, 358, 406, 690, 761, 989
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	9 cut(s)	194, 210, 332, 392, 548, 564, 668, 803, 866
HpaII	CCGG	2 cut(s)	272, 329
HphI	GGTGA	4 cut(s)	69, 626, 663, 749
Hpy166II	GTNNAC	2 cut(s)	262, 420
Hpy188I	TCNGA	8 cut(s)	123, 183, 543, 634, 696, 802, 833, 955
Hpy8I	GTNNAC	2 cut(s)	262, 420
HpyAV	CCTTC	5 cut(s)	250, 253, 279, 488, 812
HpyCH4III	ACNGT	7 cut(s)	88, 344, 362, 374, 411, 424, 439
HpyCH4V	TGCA	6 cut(s)	282, 323, 358, 754, 791, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 697
HpyF3I	CTNAG	2 cut(s)	93, 799
Hsp92II	CATG	7 cut(s)	151, 232, 358, 406, 690, 761, 989
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	123, 163, 893, 977
LmnI	GCTCC	4 cut(s)	109, 317, 465, 749
Lsp1109I	GCAGC	3 cut(s)	40, 266, 462
LweI	GCATC	6 cut(s)	121, 310, 625, 687, 734, 763
MaeI	CTAG	2 cut(s)	513, 677
MaeIII	GTNAC	4 cut(s)	75, 424, 439, 497
MalI	GATC	4 cut(s)	125, 165, 895, 979
MboI	GATC	4 cut(s)	123, 163, 893, 977
MboII	GAAGA	5 cut(s)	118, 196, 205, 265, 581
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	1 cut(s)	936
MlyI	GAGTC	4 cut(s)	203, 326, 542, 662
MmeI	TCCRAC	2 cut(s)	856, 921
Mph1103I	ATGCAT	2 cut(s)	325, 793
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	272, 329
MspR9I	CCNGG	3 cut(s)	273, 329, 871
Mva1269I	GAATGC	3 cut(s)	493, 772, 791
MvaI	CCWGG	1 cut(s)	871
MwoI	GCNNNNNNNGC	2 cut(s)	355, 697
NciI	CCSGG	2 cut(s)	273, 329
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	123, 163, 893, 977
NlaIII	CATG	7 cut(s)	151, 232, 358, 406, 690, 761, 989
NlaIV	GGNNCC	3 cut(s)	264, 523, 745
NmuCI	GTSAC	3 cut(s)	75, 424, 439
NsiI	ATGCAT	2 cut(s)	325, 793
NspI	RCATGY	2 cut(s)	151, 358
PaeI	GCATGC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	757
PctI	GAATGC	3 cut(s)	493, 772, 791
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	5 cut(s)	210, 392, 564, 803, 866
PflFI	GACNNNGTC	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	55, 281, 368, 452
PleI	GAGTC	4 cut(s)	202, 326, 542, 662
PpsI	GAGTC	4 cut(s)	202, 326, 542, 662
Psp6I	CCWGG	1 cut(s)	869
PspEI	GGTNACC	1 cut(s)	75
PspFI	CCCAGC	2 cut(s)	56, 921
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	3 cut(s)	264, 523, 745
PspPI	GGNCC	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	284
PstNI	CAGNNNCTG	2 cut(s)	121, 806
PsuI	RGATCY	1 cut(s)	893
PsyI	GACNNNGTC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	4 cut(s)	54, 280, 367, 451
Sau3AI	GATC	4 cut(s)	123, 163, 893, 977
Sau96I	GGNCC	1 cut(s)	262
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	4 cut(s)	203, 326, 542, 662
ScrFI	CCNGG	3 cut(s)	273, 329, 871
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	6 cut(s)	121, 310, 625, 687, 734, 763
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	512
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	936
SsiI	CCGC	3 cut(s)	143, 367, 723
SspMI	CTAG	2 cut(s)	513, 677
StyD4I	CCNGG	3 cut(s)	271, 327, 869
StyI	CCWWGG	3 cut(s)	228, 315, 505
TaaI	ACNGT	7 cut(s)	88, 344, 362, 374, 411, 424, 439
TaqI	TCGA	1 cut(s)	976
TasI	AATT	1 cut(s)	936
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	5 cut(s)	210, 392, 564, 803, 866
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	6 cut(s)	93, 101, 427, 448, 460, 489
TseFI	GTSAC	3 cut(s)	75, 424, 439
TseI	GCWGC	3 cut(s)	53, 279, 450
Tsp45I	GTSAC	3 cut(s)	75, 424, 439
TspDTI	ATGAA	3 cut(s)	17, 765, 939
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	6 cut(s)	93, 101, 427, 448, 460, 489
Tth111I	GACNNNGTC	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	262
XceI	RCATGY	2 cut(s)	151, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	514
XspI	CTAG	2 cut(s)	513, 677
ZrmI	AGTACT	1 cut(s)	341
Zsp2I	ATGCAT	2 cut(s)	325, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.