Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Reverse (-)

11129536 .. 11130684

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCAAGCTCATCTTCACCGCCGCCGCCCTCTTCCTCCTCTTCGCCTTTTCCCATGCCCGCGCGCCGTCCGATATCCCCAACGGCCGTGATGATGCAACAGACAACAAGATCCCGGTAGCCGATGCCGAACCGTTTAAGGCTACCACCAACACTCTACGTTTACCGAGCGAGAGACCCGGGTCCGAATCCGGACCCGTTGTGGAATTGGAGGAGACCGAGACCGTCCCCGTCGCCGAGGAGGAGAAGAAGCTTCCGGAAGCCGAGTTCGCCACCATCGAATCGAACGAGGAGAACACCGCCGATGCGTCGAAATCCGAGGCCGTTCCGTTGACCATCATCAGCTTCCGCCCCGTCGGCCGCCACTTCCCCCGCCGTCCGTTCCCGTTGTCTCTCCGTCCGGGTCACCGCTGCGGCCACGGTCGCCGCCAGCCCAAGCGGTGGACCCCGCACTTCCACGGCAGCGAGCGCGAGAAGGACACTCCCTACGGCGACGACATGATCTTGTCCTCCGGCGACGAGATGAAGTTCGATCGTCCGTTCCGCGGCGGAGCGCGCCAGATCCCGGCCAGGTGGTTCAACTTCCGCCACGGCGGACCTAGATTCCCTTACAAACACGAGGATGACATGGAATCCGAGAGGCCTCACCGCCACCATCGCCGCCACCACCACCACGATCACGACTTGGACCAAGAAAATGAGGTAGAGGAGAACCACAGGGAGCATAAACACGAGCACGAGCACAGGGGTGGTTTGTTCAGGGGCTTCCGCAAGTTCTTGAACCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

263

Amino Acids

30.47

Weight (kDa)

6.6

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AccII	CGCG	5 cut(s)	63, 65, 471, 546, 556
AccIII	TCCGGA	2 cut(s)	191, 256
AclWI	GGATC	2 cut(s)	106, 556
AcoI	YGGCCR	5 cut(s)	3, 85, 358, 415, 567
AfiI	CCNNNNNNNGG	3 cut(s)	441, 545, 565
AgsI	TTSAA	2 cut(s)	580, 781
AjnI	CCWGG	1 cut(s)	569
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	747
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	3 cut(s)	10, 253, 345
AluI	AGCT	3 cut(s)	10, 253, 345
Alw21I	GWGCWC	2 cut(s)	738, 744
Alw26I	GTCTC	4 cut(s)	169, 209, 215, 396
AlwI	GGATC	2 cut(s)	106, 556
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	2 cut(s)	191, 256
AoxI	GGCC	7 cut(s)	3, 85, 321, 358, 415, 567, 641
ApeKI	GCWGC	2 cut(s)	411, 462
AspLEI	GCGC	5 cut(s)	65, 67, 471, 556, 558
AspS9I	GGNCC	5 cut(s)	183, 194, 444, 596, 688
AsuC2I	CCSGG	5 cut(s)	116, 180, 181, 402, 566
AsuHPI	GGTGA	3 cut(s)	10, 398, 638
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	5 cut(s)	183, 194, 444, 596, 688
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	3 cut(s)	617, 731, 737
Bbv12I	GWGCWC	2 cut(s)	738, 744
BbvI	GCAGC	2 cut(s)	398, 474
BccI	CCATC	3 cut(s)	284, 344, 663
BceAI	ACGGC	8 cut(s)	52, 72, 100, 308, 360, 475, 505, 607
BciT130I	CCWGG	1 cut(s)	571
BcnI	CCSGG	5 cut(s)	116, 180, 181, 402, 566
BcoDI	GTCTC	4 cut(s)	169, 209, 215, 396
BfaI	CTAG	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	357
BisI	GCNGC	9 cut(s)	24, 27, 361, 412, 415, 427, 463, 547, 661
BlsI	GCNGC	9 cut(s)	25, 28, 362, 413, 416, 428, 464, 548, 662
Bme1390I	CCNGG	6 cut(s)	116, 180, 181, 402, 566, 571
Bme18I	GGWCC	5 cut(s)	183, 194, 444, 596, 688
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	5 cut(s)	183, 194, 444, 596, 688
BmiI	GGNNCC	3 cut(s)	184, 196, 446
BmrFI	CCNGG	6 cut(s)	116, 180, 181, 402, 566, 571
BmsI	GCATC	3 cut(s)	85, 115, 295
BoxI	GACNNNNGTC	1 cut(s)	181
BpuMI	CCSGG	5 cut(s)	116, 180, 181, 402, 566
BsaI	GGTCTC	3 cut(s)	169, 209, 215
BsaJI	CCNNGG	7 cut(s)	179, 237, 318, 418, 457, 544, 589
BsaWI	WCCGGW	2 cut(s)	191, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 545, 565
BseAI	TCCGGA	2 cut(s)	191, 256
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	7 cut(s)	179, 237, 318, 418, 457, 544, 589
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	3 cut(s)	441, 545, 565
BsePI	GCGCGC	2 cut(s)	63, 554
BseRI	GAGGAG	6 cut(s)	29, 227, 254, 257, 305, 722
BseX3I	CGGCCG	2 cut(s)	85, 358
BseXI	GCAGC	2 cut(s)	398, 474
Bsh1236I	CGCG	5 cut(s)	63, 65, 471, 546, 556
Bsh1285I	CGRYCG	4 cut(s)	88, 361, 424, 535
BshFI	GGCC	7 cut(s)	5, 87, 323, 360, 417, 569, 643
BsiEI	CGRYCG	4 cut(s)	88, 361, 424, 535
BsiHKAI	GWGCWC	2 cut(s)	738, 744
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	7 cut(s)	116, 180, 192, 257, 401, 513, 566
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	441, 545, 565
BsmAI	GTCTC	4 cut(s)	169, 209, 215, 396
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	7 cut(s)	5, 87, 323, 360, 417, 569, 643
Bso31I	GGTCTC	3 cut(s)	169, 209, 215
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	738, 744
Bsp13I	TCCGGA	2 cut(s)	191, 256
Bsp143I	GATC	5 cut(s)	111, 501, 532, 561, 676
BspANI	GGCC	7 cut(s)	5, 87, 323, 360, 417, 569, 643
BspEI	TCCGGA	2 cut(s)	191, 256
BspFNI	CGCG	5 cut(s)	63, 65, 471, 546, 556
BspLI	GGNNCC	3 cut(s)	184, 196, 446
BspPI	GGATC	2 cut(s)	106, 556
BspTNI	GGTCTC	3 cut(s)	169, 209, 215
BssECI	CCNNGG	7 cut(s)	179, 237, 318, 418, 457, 544, 589
BssHII	GCGCGC	2 cut(s)	63, 554
BssMI	GATC	5 cut(s)	111, 501, 532, 561, 676
BssSI	CACGAG	3 cut(s)	617, 731, 737
Bst2BI	CACGAG	3 cut(s)	617, 731, 737
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	3 cut(s)	135, 226, 422
Bst6I	CTCTTC	2 cut(s)	38, 47
BstC8I	GCNNGC	5 cut(s)	61, 65, 431, 467, 556
BstDSI	CCRYGG	4 cut(s)	418, 457, 544, 589
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	5 cut(s)	63, 65, 471, 546, 556
BstHHI	GCGC	5 cut(s)	65, 67, 471, 556, 558
BstKTI	GATC	5 cut(s)	114, 504, 535, 564, 679
BstMAI	GTCTC	4 cut(s)	169, 209, 215, 396
BstMBI	GATC	5 cut(s)	111, 501, 532, 561, 676
BstMCI	CGRYCG	4 cut(s)	88, 361, 424, 535
BstMWI	GCNNNNNNNGC	6 cut(s)	269, 357, 423, 468, 555, 657
BstNI	CCWGG	1 cut(s)	571
BstPAI	GACNNNNGTC	1 cut(s)	181
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	6 cut(s)	114, 178, 179, 400, 564, 569
BstUI	CGCG	5 cut(s)	63, 65, 471, 546, 556
BstV1I	GCAGC	2 cut(s)	398, 474
BstX2I	RGATCY	2 cut(s)	111, 561
BstYI	RGATCY	2 cut(s)	111, 561
BstZI	CGGCCG	2 cut(s)	85, 358
BsuRI	GGCC	7 cut(s)	5, 87, 323, 360, 417, 569, 643
BtgI	CCRYGG	4 cut(s)	418, 457, 544, 589
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	628
Cac8I	GCNNGC	5 cut(s)	61, 65, 431, 467, 556
CfoI	GCGC	5 cut(s)	65, 67, 471, 556, 558
Cfr13I	GGNCC	5 cut(s)	183, 194, 444, 596, 688
Cfr42I	CCGCGG	1 cut(s)	547
Cfr9I	CCCGGG	1 cut(s)	179
CseI	GACGC	1 cut(s)	297
CviAII	CATG	3 cut(s)	56, 499, 628
DpnI	GATC	5 cut(s)	113, 503, 534, 563, 678
DpnII	GATC	5 cut(s)	111, 501, 532, 561, 676
EaeI	YGGCCR	5 cut(s)	3, 85, 358, 415, 567
EagI	CGGCCG	2 cut(s)	85, 358
Eam1104I	CTCTTC	2 cut(s)	38, 47
EarI	CTCTTC	2 cut(s)	38, 47
EciI	GGCGGA	4 cut(s)	338, 564, 575, 609
EclXI	CGGCCG	2 cut(s)	85, 358
Eco147I	AGGCCT	1 cut(s)	643
Eco31I	GGTCTC	3 cut(s)	169, 209, 215
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	5 cut(s)	183, 194, 444, 596, 688
Eco52I	CGGCCG	2 cut(s)	85, 358
Eco88I	CYCGRG	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	3 cut(s)	59, 502, 631
FaiI	YATR	4 cut(s)	57, 500, 629, 726
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	55, 498, 627
FauI	CCCGC	3 cut(s)	68, 380, 456
Fnu4HI	GCNGC	9 cut(s)	24, 27, 361, 412, 415, 427, 463, 547, 661
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	9 cut(s)	24, 27, 361, 412, 415, 427, 463, 547, 661
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	5 cut(s)	64, 66, 470, 555, 557
GluI	GCNGC	9 cut(s)	24, 27, 361, 412, 415, 427, 463, 547, 661
HaeIII	GGCC	7 cut(s)	5, 87, 323, 360, 417, 569, 643
HapII	CCGG	7 cut(s)	116, 180, 192, 257, 401, 513, 566
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	5 cut(s)	65, 67, 471, 556, 558
Hin1II	CATG	3 cut(s)	59, 502, 631
Hin6I	GCGC	5 cut(s)	63, 65, 469, 554, 556
HinP1I	GCGC	5 cut(s)	63, 65, 469, 554, 556
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	188, 281, 603, 632
HpaII	CCGG	7 cut(s)	116, 180, 192, 257, 401, 513, 566
HphI	GGTGA	3 cut(s)	10, 398, 638
Hpy166II	GTNNAC	3 cut(s)	164, 333, 444
Hpy188I	TCNGA	4 cut(s)	73, 187, 319, 637
Hpy188III	TCNNGA	4 cut(s)	192, 257, 680, 778
Hpy8I	GTNNAC	3 cut(s)	164, 333, 444
Hpy99I	CGWCG	5 cut(s)	236, 313, 359, 497, 521
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	3 cut(s)	135, 226, 422
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	6 cut(s)	269, 357, 423, 468, 555, 657
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	59, 502, 631
HspAI	GCGC	5 cut(s)	63, 65, 469, 554, 556
Kpn2I	TCCGGA	2 cut(s)	191, 256
KspI	CCGCGG	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	111, 501, 532, 561, 676
LmnI	GCTCC	2 cut(s)	551, 721
Lsp1109I	GCAGC	2 cut(s)	398, 474
LweI	GCATC	3 cut(s)	85, 115, 295
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	113, 503, 534, 563, 678
MboI	GATC	5 cut(s)	111, 501, 532, 561, 676
MboII	GAAGA	4 cut(s)	7, 25, 34, 259
MflI	RGATCY	2 cut(s)	111, 561
MhlI	GDGCHC	2 cut(s)	738, 744
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	2 cut(s)	191, 256
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	621, 747
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	411, 546
MspI	CCGG	7 cut(s)	116, 180, 192, 257, 401, 513, 566
MspR9I	CCNGG	6 cut(s)	116, 180, 181, 402, 566, 571
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	5 cut(s)	63, 65, 471, 546, 556
MwoI	GCNNNNNNNGC	6 cut(s)	269, 357, 423, 468, 555, 657
NciI	CCSGG	5 cut(s)	116, 180, 181, 402, 566
NdeII	GATC	5 cut(s)	111, 501, 532, 561, 676
NlaIII	CATG	3 cut(s)	59, 502, 631
NlaIV	GGNNCC	3 cut(s)	184, 196, 446
NmeAIII	GCCGAG	2 cut(s)	262, 289
NmuCI	GTSAC	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	747
PauI	GCGCGC	2 cut(s)	63, 554
PceI	AGGCCT	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 285
PfeI	GAWTC	4 cut(s)	188, 281, 603, 632
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	9 cut(s)	25, 28, 362, 413, 416, 428, 464, 548, 662
Ple19I	CGATCG	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	569
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	3 cut(s)	184, 196, 446
PspPI	GGNCC	5 cut(s)	183, 194, 444, 596, 688
PsuI	RGATCY	2 cut(s)	111, 561
PteI	GCGCGC	2 cut(s)	63, 554
PvuI	CGATCG	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	621, 747
SacII	CCGCGG	1 cut(s)	547
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	9 cut(s)	24, 27, 361, 412, 415, 427, 463, 547, 661
Sau3AI	GATC	5 cut(s)	111, 501, 532, 561, 676
Sau96I	GGNCC	5 cut(s)	183, 194, 444, 596, 688
ScrFI	CCNGG	6 cut(s)	116, 180, 181, 402, 566, 571
SduI	GDGCHC	2 cut(s)	738, 744
SetI	ASST	7 cut(s)	12, 163, 255, 347, 575, 601, 705
SfaNI	GCATC	3 cut(s)	85, 115, 295
Sfr303I	CCGCGG	1 cut(s)	547
SgrBI	CCGCGG	1 cut(s)	547
SinI	GGWCC	5 cut(s)	183, 194, 444, 596, 688
SmaI	CCCGGG	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	621, 747
Sse9I	AATT	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	643
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	6 cut(s)	114, 178, 179, 400, 564, 569
TaaI	ACNGT	3 cut(s)	135, 226, 422
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	4 cut(s)	279, 284, 311, 531
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	206
TauI	GCSGC	7 cut(s)	26, 29, 363, 417, 429, 549, 663
TfiI	GAWTC	4 cut(s)	188, 281, 603, 632
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	411, 462
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	4 cut(s)	318, 369, 386, 528
TspMI	CCCGGG	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	441
VpaK11BI	GGWCC	5 cut(s)	183, 194, 444, 596, 688
XmaI	CCCGGG	1 cut(s)	179
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.