Rw7G023680

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003697
Physical Location & Seq
Reverse (-)
28451223 .. 28457114
5892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023680.1

Sequence Viewer

Length: 1011 bp
ATGAGCCGGTCGTTGGTGGGCGGTGGAGGTCACGCGCCGCTTTTCACAGTGTCGCAGTGGGCGGAGATGGAGCATCAAGCCTTGGTTTTCAAGTATCTCAAGGCCGGGCTGCCTGTTCCTCCTGACCTCTTGGCCCCTATTCGCAACAGCTTCAACCTCATCTACCCCGATTTCCTGCGTCACCCCGCTTCTTTGGCTTATGCTTCCTTCTGTGGGAAGAAAATAGACCCGGAGCCAGGGAGGTGCCGGAGGACAGATGGCAAGAAGTGGAGGTGCTCTAAAGATGCACATCCAGACTCCAAGTACTGTGAGCGGCACATGAATCGTGGTCGCTACCGTTCAAGAAAGCTTGTGGAATCACAAACTGCTTCTCAATCTTTGTCGACTGTGGCATCGTCAGACATAAAGACTGGGAGCCGTAGCCACAGTGGGAGCTTCCAAAACATGCCCTTGCATTCACCAGGAAATAGTGGAAGTCTATGCTTTGGAAGTGATGTATCTCAGTTGAAGATGGAGCCTATACCCTACGGGATAGTGAAGCGTGGAAATAGGGTCCTCGATGGAGCAGAGGAGCATAATTTTATGCCAGAAGCTTCAGGGAGTGCAAGATCTGCTGGGGTGGATAGTACTATAGACAGTCCATGGCGTCTTATGACATCTCATGTTCCCTTGAATTCCTCATCGGAACCTAGAAATGGTTCTTTTTTGCTAAACAACTCCCAGCTGCAGACATTGCAAGATAGTGAACCATTGACTGTTGATGCTGCTATGACCAAACAACAGCAACGGCAATATGTTGGTGGAGAGTTTGGCGTACTCAGATCTCTAAAACAGGAACAGCATTCTCTTCAGCCTTTCTTTGATGAGTGGCCTAAATCAAGAGATCTGGGGTTCCATCACAACGATCCTAGATCAACCAATAACTTATCAAACACAACTCAGCTGTCAATGTCTAACCTGGCTTATATTTCGAAGAGTATAAATTCTCACATGTGGTTGTATAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

336

Amino Acids

37.44

Weight (kDa)

9.25

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 15 - 48 1.4e-12 QLQ
WRC PF08879 77 - 119 4.1e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 383
AccII CGCG 1 cut(s) 35
AciI CCGC 5 cut(s) 21, 38, 62, 186, 313
AclWI GGATC 1 cut(s) 899
AcsI RAATTY 2 cut(s) 673, 982
AcuI CTGAAG 2 cut(s) 579, 833
AcyI GRCGYC 1 cut(s) 646
AfaI GTAC 3 cut(s) 305, 628, 816
AfiI CCNNNNNNNGG 4 cut(s) 13, 213, 236, 695
AflIII ACRYGT 1 cut(s) 990
AgsI TTSAA 5 cut(s) 91, 154, 342, 508, 673
AjnI CCWGG 3 cut(s) 235, 460, 957
AluBI AGCT 6 cut(s) 150, 349, 435, 593, 724, 943
AluI AGCT 6 cut(s) 150, 349, 435, 593, 724, 943
Alw21I GWGCWC 1 cut(s) 278
AlwI GGATC 1 cut(s) 899
AoxI GGCC 3 cut(s) 102, 132, 869
ApeKI GCWGC 3 cut(s) 109, 724, 764
ApoI RAATTY 2 cut(s) 673, 982
Asp700I GAANNNNTTC 1 cut(s) 697
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 133, 553
AsuC2I CCSGG 2 cut(s) 106, 230
AsuHPI GGTGA 2 cut(s) 173, 450
AsuII TTCGAA 1 cut(s) 971
AvaII GGWCC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 96, 711, 751
BccI CCATC 5 cut(s) 61, 251, 505, 554, 903
BceAI ACGGC 2 cut(s) 402, 803
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 3 cut(s) 237, 462, 959
BcnI CCSGG 2 cut(s) 106, 230
BfaI CTAG 2 cut(s) 690, 909
BfmI CTRYAG 2 cut(s) 630, 725
BglII AGATCT 3 cut(s) 608, 821, 883
BisI GCNGC 5 cut(s) 38, 110, 314, 725, 765
BlsI GCNGC 5 cut(s) 39, 111, 315, 726, 766
BmcAI AGTACT 2 cut(s) 305, 628
Bme1390I CCNGG 5 cut(s) 106, 230, 237, 462, 959
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 133, 553
BmiI GGNNCC 8 cut(s) 135, 234, 245, 416, 516, 554, 687, 893
BmrFI CCNGG 5 cut(s) 106, 230, 237, 462, 959
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 4 cut(s) 82, 274, 401, 751
BmuI ACTGGG 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 106, 230
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 646
BsaJI CCNNGG 3 cut(s) 81, 236, 641
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 213, 236, 695
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 415
Bse3DI GCAATG 1 cut(s) 731
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 3 cut(s) 237, 462, 959
BseDI CCNNGG 3 cut(s) 81, 236, 641
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 13, 213, 236, 695
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 515, 832, 953
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 3 cut(s) 96, 711, 751
BseYI CCCAGC 2 cut(s) 614, 720
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 3 cut(s) 104, 134, 871
BshNI GGYRCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 4 cut(s) 7, 105, 230, 247
BslI CCNNNNNNNGG 4 cut(s) 13, 213, 236, 695
BsmI GAATGC 2 cut(s) 454, 841
BsnI GGCC 3 cut(s) 104, 134, 871
Bsp119I TTCGAA 1 cut(s) 971
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 5 cut(s) 608, 821, 883, 904, 911
Bsp19I CCATGG 1 cut(s) 641
BspACI CCGC 5 cut(s) 21, 38, 62, 186, 313
BspANI GGCC 3 cut(s) 104, 134, 871
BspCNI CTCAG 3 cut(s) 514, 831, 952
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 8 cut(s) 135, 234, 245, 416, 516, 554, 687, 893
BspMAI CTGCAG 1 cut(s) 729
BspPI GGATC 1 cut(s) 899
BspT104I TTCGAA 1 cut(s) 971
BspT107I GGYRCC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 81, 236, 641
BssMI GATC 5 cut(s) 608, 821, 883, 904, 911
BssNI GRCGYC 1 cut(s) 646
BssT1I CCWWGG 2 cut(s) 81, 641
Bst2UI CCWGG 3 cut(s) 237, 462, 959
Bst4CI ACNGT 7 cut(s) 49, 308, 338, 388, 428, 638, 757
Bst6I CTCTTC 2 cut(s) 852, 968
BstACI GRCGYC 1 cut(s) 646
BstAPI GCANNNNNTGC 2 cut(s) 611, 733
BstBI TTCGAA 1 cut(s) 971
BstDEI CTNAG 3 cut(s) 501, 818, 939
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 5 cut(s) 611, 824, 886, 907, 914
BstMBI GATC 5 cut(s) 608, 821, 883, 904, 911
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 194, 611, 733
BstNI CCWGG 3 cut(s) 237, 462, 959
BstNSI RCATGY 2 cut(s) 448, 994
BstSCI CCNGG 5 cut(s) 104, 228, 235, 460, 957
BstSFI CTRYAG 2 cut(s) 630, 725
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 96, 711, 751
BstX2I RGATCY 3 cut(s) 608, 821, 883
BstYI RGATCY 3 cut(s) 608, 821, 883
BsuRI GGCC 3 cut(s) 104, 134, 871
BtgI CCRYGG 1 cut(s) 641
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 3 cut(s) 54, 62, 433
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 133, 553
CseI GACGC 2 cut(s) 167, 635
Csp6I GTAC 3 cut(s) 304, 627, 815
CviAII CATG 5 cut(s) 319, 445, 642, 662, 991
CviQI GTAC 3 cut(s) 304, 627, 815
DdeI CTNAG 3 cut(s) 501, 818, 939
DpnI GATC 5 cut(s) 610, 823, 885, 906, 913
DpnII GATC 5 cut(s) 608, 821, 883, 904, 911
Eam1104I CTCTTC 2 cut(s) 852, 968
EarI CTCTTC 2 cut(s) 852, 968
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 81, 641
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 579, 833
EcoO109I RGGNCCY 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 673
EcoRII CCWGG 3 cut(s) 235, 460, 957
EcoT14I CCWWGG 2 cut(s) 81, 641
ErhI CCWWGG 2 cut(s) 81, 641
FaeI CATG 5 cut(s) 322, 448, 645, 665, 994
FatI CATG 5 cut(s) 318, 444, 641, 661, 990
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 5 cut(s) 38, 110, 314, 725, 765
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 5 cut(s) 38, 110, 314, 725, 765
FspBI CTAG 2 cut(s) 690, 909
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 38, 110, 314, 725, 765
GsaI CCCAGC 2 cut(s) 618, 724
HaeIII GGCC 3 cut(s) 104, 134, 871
HapII CCGG 4 cut(s) 7, 105, 230, 247
HgaI GACGC 2 cut(s) 167, 635
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 5 cut(s) 322, 448, 645, 665, 994
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 347, 591
HinfI GANTC 3 cut(s) 296, 322, 356
HpaII CCGG 4 cut(s) 7, 105, 230, 247
HphI GGTGA 2 cut(s) 173, 450
Hpy166II GTNNAC 2 cut(s) 384, 746
Hpy188I TCNGA 3 cut(s) 400, 685, 821
Hpy188III TCNNGA 4 cut(s) 122, 293, 342, 879
Hpy8I GTNNAC 2 cut(s) 384, 746
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 7 cut(s) 49, 308, 338, 388, 428, 638, 757
HpyCH4V TGCA 5 cut(s) 287, 454, 605, 727, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 611, 733
HpyF3I CTNAG 3 cut(s) 501, 818, 939
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 5 cut(s) 322, 448, 645, 665, 994
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 5 cut(s) 608, 821, 883, 904, 911
LmnI GCTCC 7 cut(s) 70, 232, 414, 432, 514, 563, 571
Lsp1109I GCAGC 3 cut(s) 96, 711, 751
LweI GCATC 4 cut(s) 82, 274, 401, 751
MaeI CTAG 2 cut(s) 690, 909
MaeIII GTNAC 2 cut(s) 29, 179
MalI GATC 5 cut(s) 610, 823, 885, 906, 913
MbiI CCGCTC 1 cut(s) 313
MboI GATC 5 cut(s) 608, 821, 883, 904, 911
MboII GAAGA 4 cut(s) 229, 520, 839, 985
MfeI CAATTG 1 cut(s) 1006
MflI RGATCY 3 cut(s) 608, 821, 883
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 4 cut(s) 577, 673, 982, 1006
MlyI GAGTC 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 697
MspA1I CMGCKG 2 cut(s) 724, 943
MspI CCGG 4 cut(s) 7, 105, 230, 247
MspR9I CCNGG 5 cut(s) 106, 230, 237, 462, 959
MunI CAATTG 1 cut(s) 1006
Mva1269I GAATGC 2 cut(s) 454, 841
MvaI CCWGG 3 cut(s) 237, 462, 959
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 194, 611, 733
NciI CCSGG 2 cut(s) 106, 230
NcoI CCATGG 1 cut(s) 641
NdeII GATC 5 cut(s) 608, 821, 883, 904, 911
NlaIII CATG 5 cut(s) 322, 448, 645, 665, 994
NlaIV GGNNCC 8 cut(s) 135, 234, 245, 416, 516, 554, 687, 893
NmuCI GTSAC 2 cut(s) 29, 179
NspI RCATGY 2 cut(s) 448, 994
NspV TTCGAA 1 cut(s) 971
PciI ACATGT 1 cut(s) 990
PctI GAATGC 2 cut(s) 454, 841
PdmI GAANNNNTTC 1 cut(s) 697
PfeI GAWTC 2 cut(s) 322, 356
PkrI GCNGC 5 cut(s) 39, 111, 315, 726, 766
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 553
PscI ACATGT 1 cut(s) 990
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 3 cut(s) 235, 460, 957
PspFI CCCAGC 2 cut(s) 614, 720
PspGI CCWGG 3 cut(s) 235, 460, 957
PspN4I GGNNCC 8 cut(s) 135, 234, 245, 416, 516, 554, 687, 893
PspPI GGNCC 2 cut(s) 133, 553
PspPPI RGGWCCY 1 cut(s) 553
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 3 cut(s) 608, 821, 883
PvuII CAGCTG 2 cut(s) 724, 943
RsaI GTAC 3 cut(s) 305, 628, 816
RsaNI GTAC 3 cut(s) 304, 627, 815
SalI GTCGAC 1 cut(s) 382
SatI GCNGC 5 cut(s) 38, 110, 314, 725, 765
Sau3AI GATC 5 cut(s) 608, 821, 883, 904, 911
Sau96I GGNCC 2 cut(s) 133, 553
ScaI AGTACT 2 cut(s) 305, 628
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 5 cut(s) 106, 230, 237, 462, 959
SduI GDGCHC 1 cut(s) 278
SfaNI GCATC 4 cut(s) 82, 274, 401, 751
SfcI CTRYAG 2 cut(s) 630, 725
SfuI TTCGAA 1 cut(s) 971
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 4 cut(s) 577, 673, 982, 1006
SsiI CCGC 5 cut(s) 21, 38, 62, 186, 313
SspMI CTAG 2 cut(s) 690, 909
StyD4I CCNGG 5 cut(s) 104, 228, 235, 460, 957
StyI CCWWGG 2 cut(s) 81, 641
TaaI ACNGT 7 cut(s) 49, 308, 338, 388, 428, 638, 757
TaqI TCGA 3 cut(s) 383, 558, 971
TasI AATT 4 cut(s) 577, 673, 982, 1006
TatI WGTACW 2 cut(s) 303, 626
TauI GCSGC 2 cut(s) 40, 316
TfiI GAWTC 2 cut(s) 322, 356
TscAI CASTG 3 cut(s) 54, 62, 433
TseFI GTSAC 2 cut(s) 29, 179
TseI GCWGC 3 cut(s) 109, 724, 764
Tsp45I GTSAC 2 cut(s) 29, 179
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 3 cut(s) 54, 62, 433
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 2 cut(s) 673, 982
XceI RCATGY 2 cut(s) 448, 994
XmiI GTMKAC 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 697
XspI CTAG 2 cut(s) 690, 909
ZrmI AGTACT 2 cut(s) 305, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.