Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Reverse (-)

29822974 .. 29826824

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG292000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGCATCAAGCCTTGGTTTTCAAGTATCTCAAGGCCGGGCTGCCTGTTCCTCCTGACCTCTTGGTCCCTATTCGCAACAGCTTCAACCTCATCTACCCCGATTTCCTGCGTCACCCCGCCTCTTTGGCTTATGCTTCCTTCTGTGGGAAGAAAATAGACCCGGAGCCAGGGAGGTGCCGGAGGACAGATGGCAAGAAGTGGAGGTGCTCTAAAGATGCACATCCAGACTCCAAGTACTGTGAGCGGCACATGAATCGTGGTCGCTACCGTTCAAGAAAGCTTGTGGAATCACAAACTGCTTCTCAATCTTTGTCGACTGTGGCATCGTCAGACATAAGGACTGGGAGCCGTAGCCACAGTGGGAGCTTCCAAAACATGCCCTTGCACTCACCAGGAAATAGTGGAAGTCTATGCTTTGGAAGTGATGTATCTCAGTTGAAGATGGAGCCTATACCCTACGGGATAGTGAAGCGTGGAAACAGGGTCCTCGATGGAGCAGAGGAGCATAATTTTATGCCAGAAGCTTCAGGGAGTGCAAGATCTGCTGGGGTGGATAGTACTATAGACAGTCCATGGCGTCTTATGACATCTCATGTTCCCTTGAATTCCTCATCGGAACCTAGAAATGGAGCGATAAATCACCATGATGCCTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

220

Amino Acids

24.37

Weight (kDa)

9.37

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	2 - 26	3.8e-08	QLQ
WRC	PF08879	55 - 97	2.1e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	2 cut(s)	120, 247
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	2 cut(s)	239, 562
AfiI	CCNNNNNNNGG	3 cut(s)	147, 170, 629
AgsI	TTSAA	5 cut(s)	25, 88, 276, 442, 607
AjnI	CCWGG	2 cut(s)	169, 394
AluBI	AGCT	4 cut(s)	84, 283, 369, 527
AluI	AGCT	4 cut(s)	84, 283, 369, 527
Alw21I	GWGCWC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	67, 487
AsuC2I	CCSGG	2 cut(s)	40, 164
AsuHPI	GGTGA	3 cut(s)	107, 384, 635
AvaII	GGWCC	2 cut(s)	67, 487
BanI	GGYRCC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	3 cut(s)	185, 439, 488
BceAI	ACGGC	1 cut(s)	336
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	2 cut(s)	171, 396
BcnI	CCSGG	2 cut(s)	40, 164
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	2 cut(s)	44, 248
BlsI	GCNGC	2 cut(s)	45, 249
BmcAI	AGTACT	2 cut(s)	239, 562
Bme1390I	CCNGG	4 cut(s)	40, 164, 171, 396
Bme18I	GGWCC	2 cut(s)	67, 487
BmgT120I	GGNCC	2 cut(s)	67, 487
BmiI	GGNNCC	7 cut(s)	69, 168, 179, 350, 450, 488, 621
BmrFI	CCNGG	4 cut(s)	40, 164, 171, 396
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	4 cut(s)	16, 208, 335, 640
BmuI	ACTGGG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	40, 164
BsaBI	GATNNNNATC	2 cut(s)	222, 654
BsaHI	GRCGYC	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	15, 170, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 170, 629
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	2 cut(s)	222, 654
BseBI	CCWGG	2 cut(s)	171, 396
BseDI	CCNNGG	3 cut(s)	15, 170, 575
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	2 cut(s)	222, 654
BseLI	CCNNNNNNNGG	3 cut(s)	147, 170, 629
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	548
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	39, 164, 181
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	147, 170, 629
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	542
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	2 cut(s)	120, 247
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	7 cut(s)	69, 168, 179, 350, 450, 488, 621
BspT107I	GGYRCC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	15, 170, 575
BssMI	GATC	1 cut(s)	542
BssNI	GRCGYC	1 cut(s)	580
BssT1I	CCWWGG	2 cut(s)	15, 575
Bst2UI	CCWGG	2 cut(s)	171, 396
Bst4CI	ACNGT	5 cut(s)	242, 272, 322, 362, 572
BstACI	GRCGYC	1 cut(s)	580
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	545
BstMBI	GATC	1 cut(s)	542
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 545
BstNI	CCWGG	2 cut(s)	171, 396
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	4 cut(s)	38, 162, 169, 394
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	67, 487
CseI	GACGC	2 cut(s)	101, 569
Csp6I	GTAC	2 cut(s)	238, 561
CviAII	CATG	5 cut(s)	253, 379, 576, 596, 647
CviQI	GTAC	2 cut(s)	238, 561
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	1 cut(s)	544
DpnII	GATC	1 cut(s)	542
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	15, 575
Eco47I	GGWCC	2 cut(s)	67, 487
Eco57I	CTGAAG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	169, 394
EcoT14I	CCWWGG	2 cut(s)	15, 575
ErhI	CCWWGG	2 cut(s)	15, 575
FaeI	CATG	5 cut(s)	256, 382, 579, 599, 650
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	5 cut(s)	252, 378, 575, 595, 646
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	44, 248
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	44, 248
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	2 cut(s)	44, 248
GsaI	CCCAGC	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	3 cut(s)	39, 164, 181
HgaI	GACGC	2 cut(s)	101, 569
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	5 cut(s)	256, 382, 579, 599, 650
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	2 cut(s)	281, 525
HinfI	GANTC	3 cut(s)	230, 256, 290
HpaII	CCGG	3 cut(s)	39, 164, 181
HphI	GGTGA	3 cut(s)	107, 384, 635
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	2 cut(s)	334, 619
Hpy188III	TCNNGA	3 cut(s)	56, 227, 276
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	5 cut(s)	242, 272, 322, 362, 572
HpyCH4V	TGCA	3 cut(s)	221, 388, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 545
HpyF3I	CTNAG	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	5 cut(s)	256, 382, 579, 599, 650
Kzo9I	GATC	1 cut(s)	542
LmnI	GCTCC	8 cut(s)	4, 166, 348, 366, 448, 497, 505, 632
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	4 cut(s)	16, 208, 335, 640
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	544
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	1 cut(s)	542
MboII	GAAGA	2 cut(s)	163, 454
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	511, 607
MlyI	GAGTC	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	3 cut(s)	39, 164, 181
MspR9I	CCNGG	4 cut(s)	40, 164, 171, 396
MvaI	CCWGG	2 cut(s)	171, 396
MwoI	GCNNNNNNNGC	2 cut(s)	128, 545
NciI	CCSGG	2 cut(s)	40, 164
NcoI	CCATGG	1 cut(s)	575
NdeII	GATC	1 cut(s)	542
NlaIII	CATG	5 cut(s)	256, 382, 579, 599, 650
NlaIV	GGNNCC	7 cut(s)	69, 168, 179, 350, 450, 488, 621
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	256, 290
PkrI	GCNGC	2 cut(s)	45, 249
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	169, 394
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	2 cut(s)	169, 394
PspN4I	GGNNCC	7 cut(s)	69, 168, 179, 350, 450, 488, 621
PspPI	GGNCC	2 cut(s)	67, 487
PspPPI	RGGWCCY	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	2 cut(s)	239, 562
RsaNI	GTAC	2 cut(s)	238, 561
RseI	CAYNNNNRTG	1 cut(s)	648
SalI	GTCGAC	1 cut(s)	316
SatI	GCNGC	2 cut(s)	44, 248
Sau3AI	GATC	1 cut(s)	542
Sau96I	GGNCC	2 cut(s)	67, 487
ScaI	AGTACT	2 cut(s)	239, 562
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	4 cut(s)	40, 164, 171, 396
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	9 cut(s)	63, 86, 93, 179, 209, 285, 371, 529, 625
SfaNI	GCATC	4 cut(s)	16, 208, 335, 640
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	2 cut(s)	67, 487
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	511, 607
SsiI	CCGC	2 cut(s)	120, 247
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	4 cut(s)	38, 162, 169, 394
StyI	CCWWGG	2 cut(s)	15, 575
TaaI	ACNGT	5 cut(s)	242, 272, 322, 362, 572
TaqI	TCGA	2 cut(s)	317, 492
TasI	AATT	2 cut(s)	511, 607
TatI	WGTACW	2 cut(s)	237, 560
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	256, 290
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	67, 487
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	2 cut(s)	239, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.