Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Forward (+)

67359175 .. 67361959

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAATAGCTGCAGTACTGGAGGTGGGGGCGGGGTTGGGGGTAATAGTACTGGGAATCTGATGGGAATGGGGATGGGGATGAGGTCACCTTTTACAGTGTCTCAATGGCAAGAGCTGGAGCATCAGGCGCTGATCTTCAAGTATATGATGGCAGGCATGCCTGTGCCTCCTGATCTCGTGCTCCCTATTCAGAAGAGTTTTGAGTCCATCTCTCAGAGATTCTTCCACCATCCCACCATGGGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGCTGCAGGAGGACTGATGGCAAGAAATGGAGGTGCTCAAAGGATGCATACCCCGACTCGAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACAATGACACAGTCATCGTCCACTGTGACATCATTGACTGTCACTGGAACCAGCAGTGGAACTGGGAGCTTCCAGACCCTACCATTAAATTCCTTCGGGAATACCCAAGGCGCCAGTTCCGGAACCAATCAGTCTCATTATCAAATAGACTCTATTCCCTTTGGAATCCCGAACAAAGATTATAGGTATCTTCAAGGACTTAAACCTGAAATCGGTGAGCATAGTTTTTTCTCTGATACTTCAGGAAGCAACAGGGGTCTCCACATGGACTCACCAATAGACAACACATGGCCTCTGATGCCATCGAGAATTGCCTCATTTCCAGCATCAAAATCGGGTGATGGCTCCGTTTTGCAGAACGATTATCGACAGCATTCAATTTTCAATAATGACTTCCCCTCGGGGGAACCTTTGAAGCAGGAAGGTCAGTCTCTCCGACCTTTCTTTGATGAGTGGCCTAAAGGCCGAGATTCCTGGTCTGGTCTTGAGGATGAGAGATCCAACCAAACCTCATTCTCCACAACCCAGCTCTCAATATCAATTCCAATGACTTCTTCCGACTTCTCTGCAACGAGTTCTCAATCTCCACATGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

335

Amino Acids

37.0

Weight (kDa)

7.71

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	30 - 64	4.5e-16	QLQ
WRC	PF08879	92 - 134	3.9e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	2 cut(s)	30, 376
AclWI	GGATC	1 cut(s)	900
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	3 cut(s)	16, 49, 350
AfiI	CCNNNNNNNGG	5 cut(s)	239, 258, 281, 620, 811
AgsI	TTSAA	6 cut(s)	139, 387, 602, 786, 793, 823
AjnI	CCWGG	2 cut(s)	280, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	946, 978
AluBI	AGCT	4 cut(s)	9, 115, 477, 937
AluI	AGCT	4 cut(s)	9, 115, 477, 937
Alw21I	GWGCWC	2 cut(s)	183, 323
Alw26I	GTCTC	4 cut(s)	105, 546, 671, 843
AlwI	GGATC	1 cut(s)	900
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	808
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	4 cut(s)	373, 698, 863, 871
ApeKI	GCWGC	2 cut(s)	9, 288
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	3 cut(s)	130, 360, 521
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	4 cut(s)	78, 635, 672, 758
AvaI	CYCGRG	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	518
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	183, 323
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	8 cut(s)	55, 67, 142, 215, 237, 296, 718, 743
BcgI	CGANNNNNNTGC	4 cut(s)	723, 757, 956, 990
BciT130I	CCWGG	2 cut(s)	282, 883
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	4 cut(s)	105, 546, 671, 843
BfmI	CTRYAG	2 cut(s)	10, 289
BfoI	RGCGCY	3 cut(s)	131, 361, 522
BisI	GCNGC	3 cut(s)	10, 289, 376
BlsI	GCNGC	3 cut(s)	11, 290, 377
BmcAI	AGTACT	3 cut(s)	16, 49, 350
Bme1390I	CCNGG	3 cut(s)	275, 282, 883
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	7 cut(s)	273, 279, 457, 520, 532, 754, 816
BmrFI	CCNGG	3 cut(s)	275, 282, 883
BmrI	ACTGGG	2 cut(s)	60, 480
BmsI	GCATC	4 cut(s)	130, 319, 696, 743
BmuI	ACTGGG	2 cut(s)	60, 480
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	2 cut(s)	39, 137
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	4 cut(s)	237, 370, 514, 807
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 258, 281, 620, 811
Bse1I	ACTGG	5 cut(s)	22, 55, 457, 475, 522
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	282, 883
BseDI	CCNNGG	4 cut(s)	237, 370, 514, 807
BseGI	GGATG	5 cut(s)	78, 84, 229, 334, 904
BseLI	CCNNNNNNNGG	5 cut(s)	239, 258, 281, 620, 811
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	5 cut(s)	22, 55, 457, 475, 522
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	933
BshFI	GGCC	4 cut(s)	375, 700, 865, 873
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	183, 323
BsiHKCI	CYCGRG	1 cut(s)	808
BsiSI	CCGG	2 cut(s)	275, 528
BslI	CCNNNNNNNGG	5 cut(s)	239, 258, 281, 620, 811
BsmAI	GTCTC	4 cut(s)	105, 546, 671, 843
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	4 cut(s)	375, 700, 865, 873
Bso31I	GGTCTC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	808
Bsp1286I	GDGCHC	2 cut(s)	183, 323
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	132, 172, 905
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	2 cut(s)	30, 376
BspANI	GGCC	4 cut(s)	375, 700, 865, 873
BspCNI	CTCAG	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	527
BspLI	GGNNCC	7 cut(s)	273, 279, 457, 520, 532, 754, 816
BspMAI	CTGCAG	2 cut(s)	14, 293
BspPI	GGATC	1 cut(s)	900
BspT107I	GGYRCC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	671
BsrI	ACTGG	5 cut(s)	22, 55, 457, 475, 522
BssECI	CCNNGG	4 cut(s)	237, 370, 514, 807
BssMI	GATC	3 cut(s)	132, 172, 905
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	237, 514
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	282, 883
Bst4CI	ACNGT	7 cut(s)	97, 353, 371, 383, 420, 433, 448
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	154, 158
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	2 cut(s)	237, 370
BstEII	GGTNACC	1 cut(s)	84
BstF5I	GGATG	5 cut(s)	78, 84, 229, 334, 904
BstH2I	RGCGCY	3 cut(s)	131, 361, 522
BstHHI	GCGC	3 cut(s)	130, 360, 521
BstKTI	GATC	3 cut(s)	135, 175, 908
BstMAI	GTCTC	4 cut(s)	105, 546, 671, 843
BstMBI	GATC	3 cut(s)	132, 172, 905
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 364, 706
BstNI	CCWGG	2 cut(s)	282, 883
BstNSI	RCATGY	2 cut(s)	160, 367
BstPI	GGTNACC	1 cut(s)	84
BstSCI	CCNGG	3 cut(s)	273, 280, 881
BstSFI	CTRYAG	2 cut(s)	10, 289
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	905
BsuRI	GGCC	4 cut(s)	375, 700, 865, 873
BtgI	CCRYGG	2 cut(s)	237, 370
BtsCI	GGATG	5 cut(s)	78, 84, 229, 334, 904
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	4 cut(s)	102, 429, 450, 469
Cac8I	GCNNGC	2 cut(s)	154, 158
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	3 cut(s)	130, 360, 521
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	15, 48, 349
CviAII	CATG	6 cut(s)	157, 238, 364, 673, 696, 998
CviQI	GTAC	3 cut(s)	15, 48, 349
DdeI	CTNAG	1 cut(s)	213
DinI	GGCGCC	1 cut(s)	520
DpnI	GATC	3 cut(s)	134, 174, 907
DpnII	GATC	3 cut(s)	132, 172, 905
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	237, 514
Eco31I	GGTCTC	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	808
Eco91I	GGTNACC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	280, 881
EcoT14I	CCWWGG	2 cut(s)	237, 514
EcoT22I	ATGCAT	1 cut(s)	334
EgeI	GGCGCC	1 cut(s)	520
EheI	GGCGCC	1 cut(s)	520
ErhI	CCWWGG	2 cut(s)	237, 514
FaeI	CATG	6 cut(s)	160, 241, 367, 676, 699, 1001
FatI	CATG	6 cut(s)	156, 237, 363, 672, 695, 997
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	10, 289, 376
FokI	GGATG	5 cut(s)	85, 91, 216, 341, 911
Fsp4HI	GCNGC	3 cut(s)	10, 289, 376
GlaI	GCGC	3 cut(s)	129, 359, 520
GluI	GCNGC	3 cut(s)	10, 289, 376
GsaI	CCCAGC	1 cut(s)	937
GsuI	CTGGAG	2 cut(s)	39, 137
HaeII	RGCGCY	3 cut(s)	131, 361, 522
HaeIII	GGCC	4 cut(s)	375, 700, 865, 873
HapII	CCGG	2 cut(s)	275, 528
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	3 cut(s)	130, 360, 521
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	6 cut(s)	160, 241, 367, 676, 699, 1001
Hin6I	GCGC	3 cut(s)	128, 358, 519
HinP1I	GCGC	3 cut(s)	128, 358, 519
HinfI	GANTC	9 cut(s)	55, 203, 219, 341, 401, 557, 573, 677, 878
HpaII	CCGG	2 cut(s)	275, 528
HphI	GGTGA	4 cut(s)	78, 635, 672, 758
Hpy166II	GTNNAC	2 cut(s)	271, 429
Hpy188I	TCNGA	7 cut(s)	60, 192, 216, 643, 705, 845, 967
Hpy188III	TCNNGA	9 cut(s)	170, 387, 481, 505, 528, 577, 651, 714, 893
Hpy8I	GTNNAC	2 cut(s)	271, 429
HpyAV	CCTTC	4 cut(s)	259, 262, 511, 824
HpyCH4III	ACNGT	7 cut(s)	97, 353, 371, 383, 420, 433, 448
HpyCH4V	TGCA	6 cut(s)	12, 291, 332, 367, 763, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 364, 706
HpyF3I	CTNAG	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	6 cut(s)	160, 241, 367, 676, 699, 1001
HspAI	GCGC	3 cut(s)	128, 358, 519
KasI	GGCGCC	1 cut(s)	518
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	3 cut(s)	132, 172, 905
LmnI	GCTCC	5 cut(s)	118, 186, 277, 474, 758
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	4 cut(s)	130, 319, 696, 743
MaeIII	GTNAC	3 cut(s)	84, 433, 448
MalI	GATC	3 cut(s)	134, 174, 907
MboI	GATC	3 cut(s)	132, 172, 905
MboII	GAAGA	6 cut(s)	127, 205, 214, 274, 590, 954
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	2 cut(s)	183, 323
MluCI	AATT	5 cut(s)	496, 717, 786, 948, 1003
Mly113I	GGCGCC	1 cut(s)	519
MlyI	GAGTC	4 cut(s)	212, 335, 551, 671
MmeI	TCCRAC	3 cut(s)	868, 933, 990
Mph1103I	ATGCAT	1 cut(s)	334
MroI	TCCGGA	1 cut(s)	527
MseI	TTAA	2 cut(s)	494, 609
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	2 cut(s)	275, 528
MspR9I	CCNGG	3 cut(s)	275, 282, 883
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	2 cut(s)	282, 883
MwoI	GCNNNNNNNGC	3 cut(s)	127, 364, 706
NarI	GGCGCC	1 cut(s)	519
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	132, 172, 905
NlaIII	CATG	6 cut(s)	160, 241, 367, 676, 699, 1001
NlaIV	GGNNCC	7 cut(s)	273, 279, 457, 520, 532, 754, 816
NmeAIII	GCCGAG	1 cut(s)	899
NmuCI	GTSAC	3 cut(s)	84, 433, 448
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	160, 367
PaeI	GCATGC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	5 cut(s)	55, 219, 401, 573, 878
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	11, 290, 377
PleI	GAGTC	4 cut(s)	211, 335, 551, 671
PluTI	GGCGCC	1 cut(s)	522
PpsI	GAGTC	4 cut(s)	211, 335, 551, 671
Psp6I	CCWGG	2 cut(s)	280, 881
PspEI	GGTNACC	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	933
PspGI	CCWGG	2 cut(s)	280, 881
PspN4I	GGNNCC	7 cut(s)	273, 279, 457, 520, 532, 754, 816
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	2 cut(s)	14, 293
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	418
RsaI	GTAC	3 cut(s)	16, 49, 350
RsaNI	GTAC	3 cut(s)	15, 48, 349
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	494, 609
SatI	GCNGC	3 cut(s)	10, 289, 376
Sau3AI	GATC	3 cut(s)	132, 172, 905
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	3 cut(s)	16, 49, 350
SchI	GAGTC	4 cut(s)	212, 335, 551, 671
ScrFI	CCNGG	3 cut(s)	275, 282, 883
SduI	GDGCHC	2 cut(s)	183, 323
SfaNI	GCATC	4 cut(s)	130, 319, 696, 743
SfcI	CTRYAG	2 cut(s)	10, 289
SfoI	GGCGCC	1 cut(s)	520
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	5 cut(s)	496, 717, 786, 948, 1003
SsiI	CCGC	2 cut(s)	30, 376
SspDI	GGCGCC	1 cut(s)	518
StyD4I	CCNGG	3 cut(s)	273, 280, 881
StyI	CCWWGG	2 cut(s)	237, 514
TaaI	ACNGT	7 cut(s)	97, 353, 371, 383, 420, 433, 448
TaqI	TCGA	3 cut(s)	344, 713, 775
TasI	AATT	5 cut(s)	496, 717, 786, 948, 1003
TatI	WGTACW	3 cut(s)	14, 47, 348
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	5 cut(s)	55, 219, 401, 573, 878
Tru1I	TTAA	2 cut(s)	494, 609
Tru9I	TTAA	2 cut(s)	494, 609
TscAI	CASTG	4 cut(s)	102, 436, 457, 469
TseFI	GTSAC	3 cut(s)	84, 433, 448
TseI	GCWGC	2 cut(s)	9, 288
Tsp45I	GTSAC	3 cut(s)	84, 433, 448
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	4 cut(s)	102, 436, 457, 469
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	2 cut(s)	160, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
ZrmI	AGTACT	3 cut(s)	16, 49, 350
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.