Rh1AG474500

QLQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003697
Physical Location & Seq
Reverse (-)
68541825 .. 68544653
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG474500.1

Sequence Viewer

Length: 1020 bp
ATGAATAGCTGCAGTACTGGAGGTGGGGGCGGGGTTGGGGTGGGGGGTAATAGTACTGGGAATCTGATGGGAATGGGGATGGGGATGGGGATGAGGTCACCTTTTACAGTGTCTCAGTGGCAAGAGCTGGAGCATCAGGCCCTGATCTTCAAGTATATGATGGCAGGCATGCCTGTGCCTCCTGATCTCGTGCTCCCTATTCAGAAGAGTTTTGAGTCCATCTCTCAGAGATTCTTCCATCATCCCACCATGGGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGCTGCAGGAGGACTGATGGCAAGAAATGGAGGTGCTCAAAGGATGCATACCCCGACTCGAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACAATGACACAGTCATCGTCCACTGTGACATCATTGACTGTCACTGGAACCAGCAGTGGAACTGGGAGCTTCCAGACCCTTCCATTAAATTCCTTCGGGAATACCCAAGGCGCCAGTTCCGGAACCAATCAGTCTCATTATCAAATAGACTCCATTCCCTTTGGAATCCCGAACAAAGATTATAGGTATCTTCAAGGACTTAAACCTGAAATCGGTGAGCATAGTTTTTTCTCTGATACTTCAGGAAGCAACAGGGGTCTCCACATGGACTCACCAATAGACAACACATGGCCTCTGATGCCATCGAGAGTTGCCTCATTTCCAGCATCAAAATCGGGTGATGGCTCCGTTTTGCAGAACGATTATCCACAGCATTCAATTTTCAATAATGACTTCCCCTCGGGGGAACCTTTGAAACAGGAAGGTCAGTCTCTCCGACCTTTCTTTGATGAGTGGCCTAAAGGCCGAGATTCCTGGTCTGGTCTTGAGGATGAGAGATCCAACCAAACCTCATTCTCCACAACCCAGCTCTCAATATCAATTCCAATGACTTCTTCCGACTTCTCTGCAACAAGTTCTCAATCTCCACATGATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

339

Amino Acids

37.27

Weight (kDa)

7.14

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 34 - 68 4.5e-16 QLQ
WRC PF08879 96 - 138 4e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 530
AccIII TCCGGA 1 cut(s) 539
AciI CCGC 2 cut(s) 30, 388
AclWI GGATC 1 cut(s) 912
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 3 cut(s) 16, 55, 362
AfiI CCNNNNNNNGG 5 cut(s) 251, 270, 293, 632, 823
AgsI TTSAA 6 cut(s) 151, 399, 614, 798, 805, 835
AjnI CCWGG 2 cut(s) 292, 893
AjuI GAANNNNNNNTTGG 2 cut(s) 958, 990
AluBI AGCT 4 cut(s) 9, 127, 489, 949
AluI AGCT 4 cut(s) 9, 127, 489, 949
Alw21I GWGCWC 2 cut(s) 195, 335
Alw26I GTCTC 4 cut(s) 117, 558, 683, 855
AlwI GGATC 1 cut(s) 912
AlwNI CAGNNNCTG 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 820
Aor13HI TCCGGA 1 cut(s) 539
AoxI GGCC 5 cut(s) 138, 385, 710, 875, 883
ApeKI GCWGC 2 cut(s) 9, 300
ApoI RAATTY 1 cut(s) 508
AspLEI GCGC 2 cut(s) 372, 533
AspS9I GGNCC 2 cut(s) 139, 283
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 4 cut(s) 90, 647, 684, 770
AvaI CYCGRG 1 cut(s) 820
AvaII GGWCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 530
BauI CACGAG 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 195, 335
BbvI GCAGC 1 cut(s) 287
BccI CCATC 9 cut(s) 61, 73, 79, 154, 227, 246, 308, 730, 755
BcgI CGANNNNNNTGC 4 cut(s) 735, 769, 968, 1002
BciT130I CCWGG 2 cut(s) 294, 895
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 4 cut(s) 117, 558, 683, 855
BfmI CTRYAG 2 cut(s) 10, 301
BfoI RGCGCY 2 cut(s) 373, 534
BisI GCNGC 3 cut(s) 10, 301, 388
BlsI GCNGC 3 cut(s) 11, 302, 389
BmcAI AGTACT 3 cut(s) 16, 55, 362
Bme1390I CCNGG 3 cut(s) 287, 294, 895
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 820
BmgT120I GGNCC 2 cut(s) 139, 283
BmiI GGNNCC 7 cut(s) 285, 291, 469, 532, 544, 766, 828
BmrFI CCNGG 3 cut(s) 287, 294, 895
BmrI ACTGGG 2 cut(s) 66, 492
BmsI GCATC 4 cut(s) 142, 331, 708, 755
BmuI ACTGGG 2 cut(s) 66, 492
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 2 cut(s) 39, 149
BpuEI CTTGAG 1 cut(s) 926
BpuMI CCSGG 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 4 cut(s) 249, 382, 526, 819
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 270, 293, 632, 823
Bse1I ACTGG 5 cut(s) 22, 61, 469, 487, 534
BseAI TCCGGA 1 cut(s) 539
BseBI CCWGG 2 cut(s) 294, 895
BseDI CCNNGG 4 cut(s) 249, 382, 526, 819
BseGI GGATG 6 cut(s) 84, 90, 96, 241, 346, 916
BseLI CCNNNNNNNGG 5 cut(s) 251, 270, 293, 632, 823
BseMII CTCAG 2 cut(s) 128, 239
BseNI ACTGG 5 cut(s) 22, 61, 469, 487, 534
BseXI GCAGC 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 945
BshFI GGCC 5 cut(s) 140, 387, 712, 877, 885
BshNI GGYRCC 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 195, 335
BsiHKCI CYCGRG 1 cut(s) 820
BsiSI CCGG 2 cut(s) 287, 540
BslI CCNNNNNNNGG 5 cut(s) 251, 270, 293, 632, 823
BsmAI GTCTC 4 cut(s) 117, 558, 683, 855
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 5 cut(s) 140, 387, 712, 877, 885
Bso31I GGTCTC 1 cut(s) 683
BsoBI CYCGRG 1 cut(s) 820
Bsp1286I GDGCHC 2 cut(s) 195, 335
Bsp13I TCCGGA 1 cut(s) 539
Bsp143I GATC 3 cut(s) 144, 184, 917
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 2 cut(s) 30, 388
BspANI GGCC 5 cut(s) 140, 387, 712, 877, 885
BspCNI CTCAG 2 cut(s) 127, 238
BspEI TCCGGA 1 cut(s) 539
BspLI GGNNCC 7 cut(s) 285, 291, 469, 532, 544, 766, 828
BspMAI CTGCAG 2 cut(s) 14, 305
BspPI GGATC 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 683
BsrI ACTGG 5 cut(s) 22, 61, 469, 487, 534
BssECI CCNNGG 4 cut(s) 249, 382, 526, 819
BssMI GATC 3 cut(s) 144, 184, 917
BssNI GRCGYC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 2 cut(s) 249, 526
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 294, 895
Bst4CI ACNGT 7 cut(s) 109, 365, 383, 395, 432, 445, 460
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 166, 170
BstDEI CTNAG 2 cut(s) 114, 225
BstDSI CCRYGG 2 cut(s) 249, 382
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 6 cut(s) 84, 90, 96, 241, 346, 916
BstH2I RGCGCY 2 cut(s) 373, 534
BstHHI GCGC 2 cut(s) 372, 533
BstKTI GATC 3 cut(s) 147, 187, 920
BstMAI GTCTC 4 cut(s) 117, 558, 683, 855
BstMBI GATC 3 cut(s) 144, 184, 917
BstMWI GCNNNNNNNGC 2 cut(s) 376, 718
BstNI CCWGG 2 cut(s) 294, 895
BstNSI RCATGY 2 cut(s) 172, 379
BstPI GGTNACC 1 cut(s) 96
BstSCI CCNGG 3 cut(s) 285, 292, 893
BstSFI CTRYAG 2 cut(s) 10, 301
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
BsuRI GGCC 5 cut(s) 140, 387, 712, 877, 885
BtgI CCRYGG 2 cut(s) 249, 382
BtsCI GGATG 6 cut(s) 84, 90, 96, 241, 346, 916
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 5 cut(s) 114, 122, 441, 462, 481
Cac8I GCNNGC 2 cut(s) 166, 170
CaiI CAGNNNCTG 1 cut(s) 142
CfoI GCGC 2 cut(s) 372, 533
Cfr13I GGNCC 2 cut(s) 139, 283
CseI GACGC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 15, 54, 361
CviAII CATG 6 cut(s) 169, 250, 376, 685, 708, 1010
CviQI GTAC 3 cut(s) 15, 54, 361
DdeI CTNAG 2 cut(s) 114, 225
DinI GGCGCC 1 cut(s) 532
DpnI GATC 3 cut(s) 146, 186, 919
DpnII GATC 3 cut(s) 144, 184, 917
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 249, 526
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 820
Eco91I GGTNACC 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 292, 893
EcoT14I CCWWGG 2 cut(s) 249, 526
EcoT22I ATGCAT 1 cut(s) 346
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
ErhI CCWWGG 2 cut(s) 249, 526
FaeI CATG 6 cut(s) 172, 253, 379, 688, 711, 1013
FatI CATG 6 cut(s) 168, 249, 375, 684, 707, 1009
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 10, 301, 388
FokI GGATG 6 cut(s) 91, 97, 103, 228, 353, 923
Fsp4HI GCNGC 3 cut(s) 10, 301, 388
GlaI GCGC 2 cut(s) 371, 532
GluI GCNGC 3 cut(s) 10, 301, 388
GsaI CCCAGC 1 cut(s) 949
GsuI CTGGAG 2 cut(s) 39, 149
HaeII RGCGCY 2 cut(s) 373, 534
HaeIII GGCC 5 cut(s) 140, 387, 712, 877, 885
HapII CCGG 2 cut(s) 287, 540
HgaI GACGC 1 cut(s) 306
HhaI GCGC 2 cut(s) 372, 533
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 6 cut(s) 172, 253, 379, 688, 711, 1013
Hin6I GCGC 2 cut(s) 370, 531
HinP1I GCGC 2 cut(s) 370, 531
HinfI GANTC 9 cut(s) 61, 215, 231, 353, 413, 569, 585, 689, 890
HpaII CCGG 2 cut(s) 287, 540
HphI GGTGA 4 cut(s) 90, 647, 684, 770
Hpy166II GTNNAC 2 cut(s) 283, 441
Hpy188I TCNGA 7 cut(s) 66, 204, 228, 655, 717, 857, 979
Hpy188III TCNNGA 9 cut(s) 182, 399, 493, 517, 540, 589, 663, 726, 905
Hpy8I GTNNAC 2 cut(s) 283, 441
HpyAV CCTTC 5 cut(s) 271, 274, 509, 523, 836
HpyCH4III ACNGT 7 cut(s) 109, 365, 383, 395, 432, 445, 460
HpyCH4V TGCA 6 cut(s) 12, 303, 344, 379, 775, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 718
HpyF3I CTNAG 2 cut(s) 114, 225
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 6 cut(s) 172, 253, 379, 688, 711, 1013
HspAI GCGC 2 cut(s) 370, 531
KasI GGCGCC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 539
Kzo9I GATC 3 cut(s) 144, 184, 917
LmnI GCTCC 5 cut(s) 130, 198, 289, 486, 770
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 4 cut(s) 142, 331, 708, 755
MaeIII GTNAC 3 cut(s) 96, 445, 460
MalI GATC 3 cut(s) 146, 186, 919
MboI GATC 3 cut(s) 144, 184, 917
MboII GAAGA 6 cut(s) 139, 217, 226, 286, 602, 966
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 2 cut(s) 195, 335
MluCI AATT 4 cut(s) 508, 798, 960, 1015
Mly113I GGCGCC 1 cut(s) 531
MlyI GAGTC 4 cut(s) 224, 347, 563, 683
MmeI TCCRAC 3 cut(s) 880, 945, 1002
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 539
MseI TTAA 2 cut(s) 506, 621
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 2 cut(s) 287, 540
MspR9I CCNGG 3 cut(s) 287, 294, 895
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 2 cut(s) 294, 895
MwoI GCNNNNNNNGC 2 cut(s) 376, 718
NarI GGCGCC 1 cut(s) 531
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 249
NdeII GATC 3 cut(s) 144, 184, 917
NlaIII CATG 6 cut(s) 172, 253, 379, 688, 711, 1013
NlaIV GGNNCC 7 cut(s) 285, 291, 469, 532, 544, 766, 828
NmeAIII GCCGAG 1 cut(s) 911
NmuCI GTSAC 3 cut(s) 96, 445, 460
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 2 cut(s) 172, 379
PaeI GCATGC 1 cut(s) 172
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 5 cut(s) 61, 231, 413, 585, 890
PflFI GACNNNGTC 1 cut(s) 430
PkrI GCNGC 3 cut(s) 11, 302, 389
PleI GAGTC 4 cut(s) 223, 347, 563, 683
PluTI GGCGCC 1 cut(s) 534
PpsI GAGTC 4 cut(s) 223, 347, 563, 683
Psp6I CCWGG 2 cut(s) 292, 893
PspEI GGTNACC 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 945
PspGI CCWGG 2 cut(s) 292, 893
PspN4I GGNNCC 7 cut(s) 285, 291, 469, 532, 544, 766, 828
PspPI GGNCC 2 cut(s) 139, 283
PstI CTGCAG 2 cut(s) 14, 305
PstNI CAGNNNCTG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 917
PsyI GACNNNGTC 1 cut(s) 430
RsaI GTAC 3 cut(s) 16, 55, 362
RsaNI GTAC 3 cut(s) 15, 54, 361
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 506, 621
SatI GCNGC 3 cut(s) 10, 301, 388
Sau3AI GATC 3 cut(s) 144, 184, 917
Sau96I GGNCC 2 cut(s) 139, 283
ScaI AGTACT 3 cut(s) 16, 55, 362
SchI GAGTC 4 cut(s) 224, 347, 563, 683
ScrFI CCNGG 3 cut(s) 287, 294, 895
SduI GDGCHC 2 cut(s) 195, 335
SfaNI GCATC 4 cut(s) 142, 331, 708, 755
SfcI CTRYAG 2 cut(s) 10, 301
SfoI GGCGCC 1 cut(s) 532
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SphI GCATGC 1 cut(s) 172
Sse9I AATT 4 cut(s) 508, 798, 960, 1015
SsiI CCGC 2 cut(s) 30, 388
SspDI GGCGCC 1 cut(s) 530
StyD4I CCNGG 3 cut(s) 285, 292, 893
StyI CCWWGG 2 cut(s) 249, 526
TaaI ACNGT 7 cut(s) 109, 365, 383, 395, 432, 445, 460
TaqI TCGA 2 cut(s) 356, 725
TasI AATT 4 cut(s) 508, 798, 960, 1015
TatI WGTACW 3 cut(s) 14, 53, 360
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 5 cut(s) 61, 231, 413, 585, 890
Tru1I TTAA 2 cut(s) 506, 621
Tru9I TTAA 2 cut(s) 506, 621
TscAI CASTG 5 cut(s) 114, 122, 448, 469, 481
TseFI GTSAC 3 cut(s) 96, 445, 460
TseI GCWGC 2 cut(s) 9, 300
Tsp45I GTSAC 3 cut(s) 96, 445, 460
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 5 cut(s) 114, 122, 448, 469, 481
Tth111I GACNNNGTC 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 508
XceI RCATGY 2 cut(s) 172, 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 380
ZrmI AGTACT 3 cut(s) 16, 55, 362
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.