RLG00000026028

QLQ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003697
Physical Location & Seq
Forward (+)
107756 .. 110501
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026028

Sequence Viewer

Length: 1056 bp
ATGAATAGCTGCAGTACTGGAGGTGGGGGCGGGGTTGGGGTTGGGGGTAATAGTACTGGGAATCTGATGGGAATGGGGATGGGGATGAGGTCACCTTTTACAGTGTCTCAGTGGCAAGAGCTGGAGCATCAGGCCCTGATCTTCAAGTATATGATGGCAGGCATGCCTGTGCCTCCTGATCTCGTGCTCCCTATTCAGAAGAGTTTTGAGTCCATCTCTCAGAGATTCTTCCATCATCCCACCATGGGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGCTGCAGGAGGACTGATGGCAAGAAATGGAGGTGCTCAAAGGATGCATACCCCGACTCGAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACAATGATACAGTCATCGTCCACTGTGACATCATTGACTGTCACTGGAACCAGCAGTGGAACTGGGAGCTTCCAGACCCTTCCATTAAATTCCTTCGGGAATACCCAAGGCGCCAGTTCTGGAACCAATCAGTCTCATTATCAAATAGACTCTATTCCCTTTGGAATCCCAAACAAAGATTATAGGTATTTTTTCGTTTTATTTTTTTCTGCAAACAAAGGTTATAAGTATCTTCAAGGACTTAAACCTGAAATCGGTGAGCATAGTTTTTTCTCTGATACTTCAGGAAGCAACAGGGGTCTCCACATGGACTCACCAATAGACAACACATGGCCTCTGATGCCATCGAGAATTGCCTCATTTCCAGCATCAAAATCGGGTGATGGCTCCGTTTTGCAGAACGATTATCCACAGCATTCAATTTTCAATAATGACTTCCCCTCGGGGGAACCTTTGAAACAGGAAGGTCAGTCTCTCCGACCTTTCTTTGATGAGTGGCCTAAAGGCCGAGATTCCTGGTCTGGTCTTGAGGATGAGAGATCCAACCAAACCTCATTTTCCACAACCCAGCTCTCAATATCAATTCCAATGACTTCTTCCGACTTCTCTGCAACAAGTTCTCAATCTCCACATGATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

352

Amino Acids

38.82

Weight (kDa)

8.21

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 32 - 66 4.8e-16 QLQ
WRC PF08879 94 - 136 4.2e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 524
AciI CCGC 2 cut(s) 30, 382
AclWI GGATC 1 cut(s) 948
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 3 cut(s) 16, 55, 356
AfiI CCNNNNNNNGG 5 cut(s) 245, 264, 287, 668, 859
AgsI TTSAA 6 cut(s) 145, 393, 650, 834, 841, 871
AjnI CCWGG 2 cut(s) 286, 929
AjuI GAANNNNNNNTTGG 2 cut(s) 994, 1026
AluBI AGCT 4 cut(s) 9, 121, 483, 985
AluI AGCT 4 cut(s) 9, 121, 483, 985
Alw21I GWGCWC 2 cut(s) 189, 329
Alw26I GTCTC 4 cut(s) 111, 552, 719, 891
AlwI GGATC 1 cut(s) 948
AlwNI CAGNNNCTG 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 856
AoxI GGCC 5 cut(s) 132, 379, 746, 911, 919
ApeKI GCWGC 2 cut(s) 9, 294
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 2 cut(s) 366, 527
AspS9I GGNCC 2 cut(s) 133, 277
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 4 cut(s) 84, 683, 720, 806
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 524
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 189, 329
BbvI GCAGC 1 cut(s) 281
BccI CCATC 8 cut(s) 61, 73, 148, 221, 240, 302, 766, 791
BcgI CGANNNNNNTGC 4 cut(s) 771, 805, 1004, 1038
BciT130I CCWGG 2 cut(s) 288, 931
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 4 cut(s) 111, 552, 719, 891
BfmI CTRYAG 2 cut(s) 10, 295
BfoI RGCGCY 2 cut(s) 367, 528
BisI GCNGC 3 cut(s) 10, 295, 382
BlsI GCNGC 3 cut(s) 11, 296, 383
BmcAI AGTACT 3 cut(s) 16, 55, 356
Bme1390I CCNGG 3 cut(s) 281, 288, 931
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 133, 277
BmiI GGNNCC 7 cut(s) 279, 285, 463, 526, 538, 802, 864
BmrFI CCNGG 3 cut(s) 281, 288, 931
BmrI ACTGGG 2 cut(s) 66, 486
BmsI GCATC 4 cut(s) 136, 325, 744, 791
BmuI ACTGGG 2 cut(s) 66, 486
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 2 cut(s) 39, 143
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 4 cut(s) 243, 376, 520, 855
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 264, 287, 668, 859
Bse1I ACTGG 5 cut(s) 22, 61, 463, 481, 528
BseBI CCWGG 2 cut(s) 288, 931
BseDI CCNNGG 4 cut(s) 243, 376, 520, 855
BseGI GGATG 5 cut(s) 84, 90, 235, 340, 952
BseLI CCNNNNNNNGG 5 cut(s) 245, 264, 287, 668, 859
BseMII CTCAG 2 cut(s) 122, 233
BseNI ACTGG 5 cut(s) 22, 61, 463, 481, 528
BseXI GCAGC 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 981
BshFI GGCC 5 cut(s) 134, 381, 748, 913, 921
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 2 cut(s) 189, 329
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 5 cut(s) 245, 264, 287, 668, 859
BsmAI GTCTC 4 cut(s) 111, 552, 719, 891
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 5 cut(s) 134, 381, 748, 913, 921
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 856
Bsp1286I GDGCHC 2 cut(s) 189, 329
Bsp143I GATC 3 cut(s) 138, 178, 953
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 2 cut(s) 30, 382
BspANI GGCC 5 cut(s) 134, 381, 748, 913, 921
BspCNI CTCAG 2 cut(s) 121, 232
BspLI GGNNCC 7 cut(s) 279, 285, 463, 526, 538, 802, 864
BspMAI CTGCAG 2 cut(s) 14, 299
BspPI GGATC 1 cut(s) 948
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 719
BsrI ACTGG 5 cut(s) 22, 61, 463, 481, 528
BssECI CCNNGG 4 cut(s) 243, 376, 520, 855
BssMI GATC 3 cut(s) 138, 178, 953
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 2 cut(s) 243, 520
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 288, 931
Bst4CI ACNGT 7 cut(s) 103, 359, 377, 389, 426, 439, 454
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 160, 164
BstDEI CTNAG 2 cut(s) 108, 219
BstDSI CCRYGG 2 cut(s) 243, 376
BstEII GGTNACC 1 cut(s) 90
BstF5I GGATG 5 cut(s) 84, 90, 235, 340, 952
BstH2I RGCGCY 2 cut(s) 367, 528
BstHHI GCGC 2 cut(s) 366, 527
BstKTI GATC 3 cut(s) 141, 181, 956
BstMAI GTCTC 4 cut(s) 111, 552, 719, 891
BstMBI GATC 3 cut(s) 138, 178, 953
BstMWI GCNNNNNNNGC 2 cut(s) 370, 754
BstNI CCWGG 2 cut(s) 288, 931
BstNSI RCATGY 2 cut(s) 166, 373
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 279, 286, 929
BstSFI CTRYAG 2 cut(s) 10, 295
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BsuRI GGCC 5 cut(s) 134, 381, 748, 913, 921
BtgI CCRYGG 2 cut(s) 243, 376
BtsCI GGATG 5 cut(s) 84, 90, 235, 340, 952
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 5 cut(s) 108, 116, 435, 456, 475
Cac8I GCNNGC 2 cut(s) 160, 164
CaiI CAGNNNCTG 1 cut(s) 136
CfoI GCGC 2 cut(s) 366, 527
Cfr13I GGNCC 2 cut(s) 133, 277
CseI GACGC 1 cut(s) 300
Csp6I GTAC 3 cut(s) 15, 54, 355
CviAII CATG 6 cut(s) 163, 244, 370, 721, 744, 1046
CviQI GTAC 3 cut(s) 15, 54, 355
DdeI CTNAG 2 cut(s) 108, 219
DinI GGCGCC 1 cut(s) 526
DpnI GATC 3 cut(s) 140, 180, 955
DpnII GATC 3 cut(s) 138, 178, 953
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 243, 520
Eco31I GGTCTC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 856
Eco91I GGTNACC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 286, 929
EcoT14I CCWWGG 2 cut(s) 243, 520
EcoT22I ATGCAT 1 cut(s) 340
EgeI GGCGCC 1 cut(s) 526
EheI GGCGCC 1 cut(s) 526
ErhI CCWWGG 2 cut(s) 243, 520
FaeI CATG 6 cut(s) 166, 247, 373, 724, 747, 1049
FatI CATG 6 cut(s) 162, 243, 369, 720, 743, 1045
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 10, 295, 382
FokI GGATG 5 cut(s) 91, 97, 222, 347, 959
Fsp4HI GCNGC 3 cut(s) 10, 295, 382
GlaI GCGC 2 cut(s) 365, 526
GluI GCNGC 3 cut(s) 10, 295, 382
GsaI CCCAGC 1 cut(s) 985
GsuI CTGGAG 2 cut(s) 39, 143
HaeII RGCGCY 2 cut(s) 367, 528
HaeIII GGCC 5 cut(s) 134, 381, 748, 913, 921
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 300
HhaI GCGC 2 cut(s) 366, 527
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 6 cut(s) 166, 247, 373, 724, 747, 1049
Hin6I GCGC 2 cut(s) 364, 525
HinP1I GCGC 2 cut(s) 364, 525
HinfI GANTC 9 cut(s) 61, 209, 225, 347, 407, 563, 579, 725, 926
HpaII CCGG 1 cut(s) 281
HphI GGTGA 4 cut(s) 84, 683, 720, 806
Hpy166II GTNNAC 2 cut(s) 277, 435
Hpy188I TCNGA 7 cut(s) 66, 198, 222, 691, 753, 893, 1015
Hpy188III TCNNGA 8 cut(s) 176, 393, 487, 511, 534, 699, 762, 941
Hpy8I GTNNAC 2 cut(s) 277, 435
HpyAV CCTTC 5 cut(s) 265, 268, 503, 517, 872
HpyCH4III ACNGT 7 cut(s) 103, 359, 377, 389, 426, 439, 454
HpyCH4V TGCA 7 cut(s) 12, 297, 338, 373, 626, 811, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 370, 754
HpyF3I CTNAG 2 cut(s) 108, 219
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 6 cut(s) 166, 247, 373, 724, 747, 1049
HspAI GCGC 2 cut(s) 364, 525
KasI GGCGCC 1 cut(s) 524
Kzo9I GATC 3 cut(s) 138, 178, 953
LmnI GCTCC 5 cut(s) 124, 192, 283, 480, 806
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 4 cut(s) 136, 325, 744, 791
MaeIII GTNAC 3 cut(s) 90, 439, 454
MalI GATC 3 cut(s) 140, 180, 955
MboI GATC 3 cut(s) 138, 178, 953
MboII GAAGA 6 cut(s) 133, 211, 220, 280, 638, 1002
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 2 cut(s) 189, 329
MluCI AATT 5 cut(s) 502, 765, 834, 996, 1051
Mly113I GGCGCC 1 cut(s) 525
MlyI GAGTC 4 cut(s) 218, 341, 557, 719
MmeI TCCRAC 3 cut(s) 916, 981, 1038
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 2 cut(s) 500, 657
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 281, 288, 931
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 2 cut(s) 288, 931
MwoI GCNNNNNNNGC 2 cut(s) 370, 754
NarI GGCGCC 1 cut(s) 525
NciI CCSGG 1 cut(s) 281
NcoI CCATGG 1 cut(s) 243
NdeII GATC 3 cut(s) 138, 178, 953
NlaIII CATG 6 cut(s) 166, 247, 373, 724, 747, 1049
NlaIV GGNNCC 7 cut(s) 279, 285, 463, 526, 538, 802, 864
NmeAIII GCCGAG 1 cut(s) 947
NmuCI GTSAC 3 cut(s) 90, 439, 454
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 2 cut(s) 166, 373
PaeI GCATGC 1 cut(s) 166
PctI GAATGC 1 cut(s) 829
PfeI GAWTC 5 cut(s) 61, 225, 407, 579, 926
PkrI GCNGC 3 cut(s) 11, 296, 383
PleI GAGTC 4 cut(s) 217, 341, 557, 719
PluTI GGCGCC 1 cut(s) 528
PpsI GAGTC 4 cut(s) 217, 341, 557, 719
PsiI TTATAA 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 286, 929
PspEI GGTNACC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 981
PspGI CCWGG 2 cut(s) 286, 929
PspN4I GGNNCC 7 cut(s) 279, 285, 463, 526, 538, 802, 864
PspPI GGNCC 2 cut(s) 133, 277
PstI CTGCAG 2 cut(s) 14, 299
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 953
RsaI GTAC 3 cut(s) 16, 55, 356
RsaNI GTAC 3 cut(s) 15, 54, 355
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 500, 657
SatI GCNGC 3 cut(s) 10, 295, 382
Sau3AI GATC 3 cut(s) 138, 178, 953
Sau96I GGNCC 2 cut(s) 133, 277
ScaI AGTACT 3 cut(s) 16, 55, 356
SchI GAGTC 4 cut(s) 218, 341, 557, 719
ScrFI CCNGG 3 cut(s) 281, 288, 931
SduI GDGCHC 2 cut(s) 189, 329
SfaNI GCATC 4 cut(s) 136, 325, 744, 791
SfcI CTRYAG 2 cut(s) 10, 295
SfoI GGCGCC 1 cut(s) 526
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
SphI GCATGC 1 cut(s) 166
Sse9I AATT 5 cut(s) 502, 765, 834, 996, 1051
SsiI CCGC 2 cut(s) 30, 382
SspDI GGCGCC 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 279, 286, 929
StyI CCWWGG 2 cut(s) 243, 520
TaaI ACNGT 7 cut(s) 103, 359, 377, 389, 426, 439, 454
TaqI TCGA 2 cut(s) 350, 761
TasI AATT 5 cut(s) 502, 765, 834, 996, 1051
TatI WGTACW 3 cut(s) 14, 53, 354
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 5 cut(s) 61, 225, 407, 579, 926
Tru1I TTAA 2 cut(s) 500, 657
Tru9I TTAA 2 cut(s) 500, 657
TscAI CASTG 5 cut(s) 108, 116, 442, 463, 475
TseFI GTSAC 3 cut(s) 90, 439, 454
TseI GCWGC 2 cut(s) 9, 294
Tsp45I GTSAC 3 cut(s) 90, 439, 454
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 793
TspRI CASTG 5 cut(s) 108, 116, 442, 463, 475
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 502
XceI RCATGY 2 cut(s) 166, 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
ZrmI AGTACT 3 cut(s) 16, 55, 356
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.