Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011180.1

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Reverse (-)

994 .. 7586

Gene Structure 6593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011180.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

atgagccggtcgttggtgggcggtggaggtcacgcgccgcttttcacagtgtcgcagtgggcggagatggagcatcaagccttggttttcaagtatctcaaggccgggctgcctgttcctcctgacctcttggtccctattcgcaacagcttcaacctcatctaccccgatttcctgcgacaccccgcctctttggcttatgcttccttctgtgggaagaaaatagacccggagccagggaggtgccggaggacagatggcaagaagtggaggtgctctaaagatgcacatccagactccaagtactgtgagcggcacatgaatcgtggtcgctaccgttcaagaaagcttgtggaatcacaaactgcttctcaatctttgtcgactgtggcatcgtcagacataaggactgggagccgtagccacagtgggagcttccaaaacatgcccttgcactcaccaggaaatagtggaagtctatgctttggaagtgatgtatctcagttgaagatggagcctataccctacgggatagtgaagcgtggaaacaggtttgacatgactgccagcatattgttaatgcagttgttctttcatgtttctaccctggcttatgcttccttctgtgggaagaaaatagacccggagccagggaggtgccggaggacagatggcaagaagtggaggtgctctaaagatgcacatccagactccaagtactgtgagcggcacatgaatcgtggtcgctaccgttcaagaaagcttgtggaatcacaaactgcttctcaatctttgtcgactgtggcatcgtcagacataaggactgggagccgtagccacagtgggagcttccaaaacatgcccttgcactcaccaggaaatagtggaagtctatgctttggaagtgatgtatctcagttgaagatggagcctataccctacgggatagtgaagcgtggaaacagggtcctcgatggagcagaggagcataattttatgccagaagcttcagggagtgcaagatctgctggggtggatagtactatagacagtccatggcgtcttatgacatctcatgttcccttgaattcctcatcggaacctagaaatggttcttttttgctaaacaactcccagctgcagacattgcaagatagtgaaccattgactgttgatgctgctatgaccaaacaacagcaacggcaatatgttggtggagagtttggcgtactcagatctctaaaacaggaacagcattctcttcagcctttctttgatgagtggcctaaatcaagagatctggggttccatcacaacgatcctagatcaaccaataacttatcaaacacaactcagctgtcaatgtctaacctggtggctccctctaatttcttcaaggagcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

468

Amino Acids

52.18

Weight (kDa)

9.6

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccB1I	GGYRCC	2 cut(s)	243, 657
AccBSI	CCGCTC	2 cut(s)	313, 727
AccI	GTMKAC	2 cut(s)	383, 797
AccII	CGCG	1 cut(s)	35
AciI	CCGC	6 cut(s)	21, 38, 62, 186, 313, 727
AclWI	GGATC	1 cut(s)	1313
AcsI	RAATTY	1 cut(s)	1087
AcuI	CTGAAG	2 cut(s)	993, 1247
AcyI	GRCGYC	1 cut(s)	1060
AfaI	GTAC	4 cut(s)	305, 719, 1042, 1230
AfiI	CCNNNNNNNGG	6 cut(s)	13, 213, 236, 627, 650, 1109
AgsI	TTSAA	8 cut(s)	91, 154, 342, 508, 756, 922, 1087, 1396
AjnI	CCWGG	6 cut(s)	235, 460, 606, 649, 874, 1371
AluBI	AGCT	8 cut(s)	150, 349, 435, 763, 849, 1007, 1138, 1357
AluI	AGCT	8 cut(s)	150, 349, 435, 763, 849, 1007, 1138, 1357
Alw21I	GWGCWC	2 cut(s)	278, 692
AlwI	GGATC	1 cut(s)	1313
AoxI	GGCC	2 cut(s)	102, 1283
ApeKI	GCWGC	3 cut(s)	109, 1138, 1178
ApoI	RAATTY	1 cut(s)	1087
Asp700I	GAANNNNTTC	1 cut(s)	1111
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	133, 967
AsuC2I	CCSGG	3 cut(s)	106, 230, 644
AsuHPI	GGTGA	2 cut(s)	450, 864
AvaII	GGWCC	2 cut(s)	133, 967
BanI	GGYRCC	2 cut(s)	243, 657
Bbv12I	GWGCWC	2 cut(s)	278, 692
BbvI	GCAGC	3 cut(s)	96, 1125, 1165
BccI	CCATC	7 cut(s)	61, 251, 505, 665, 919, 968, 1317
BceAI	ACGGC	3 cut(s)	402, 816, 1217
BcgI	CGANNNNNNTGC	4 cut(s)	305, 339, 719, 753
BciT130I	CCWGG	6 cut(s)	237, 462, 608, 651, 876, 1373
BcnI	CCSGG	3 cut(s)	106, 230, 644
BfaI	CTAG	2 cut(s)	1104, 1323
BfmI	CTRYAG	2 cut(s)	1044, 1139
BglI	GCCNNNNNGGC	1 cut(s)	194
BglII	AGATCT	3 cut(s)	1022, 1235, 1297
BisI	GCNGC	6 cut(s)	38, 110, 314, 728, 1139, 1179
BlsI	GCNGC	6 cut(s)	39, 111, 315, 729, 1140, 1180
BmcAI	AGTACT	3 cut(s)	305, 719, 1042
Bme1390I	CCNGG	9 cut(s)	106, 230, 237, 462, 608, 644, 651, 876, 1373
Bme18I	GGWCC	2 cut(s)	133, 967
BmgT120I	GGNCC	2 cut(s)	133, 967
BmrFI	CCNGG	9 cut(s)	106, 230, 237, 462, 608, 644, 651, 876, 1373
BmrI	ACTGGG	2 cut(s)	420, 834
BmsI	GCATC	6 cut(s)	82, 274, 401, 688, 815, 1165
BmuI	ACTGGG	2 cut(s)	420, 834
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	3 cut(s)	106, 230, 644
BsaBI	GATNNNNATC	2 cut(s)	288, 702
BsaHI	GRCGYC	1 cut(s)	1060
BsaJI	CCNNGG	5 cut(s)	81, 236, 606, 650, 1055
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 213, 236, 627, 650, 1109
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	2 cut(s)	415, 829
Bse3DI	GCAATG	1 cut(s)	1145
Bse8I	GATNNNNATC	2 cut(s)	288, 702
BseBI	CCWGG	6 cut(s)	237, 462, 608, 651, 876, 1373
BseDI	CCNNGG	5 cut(s)	81, 236, 606, 650, 1055
BseGI	GGATG	2 cut(s)	289, 703
BseJI	GATNNNNATC	2 cut(s)	288, 702
BseLI	CCNNNNNNNGG	6 cut(s)	13, 213, 236, 627, 650, 1109
BseMI	GCAATG	1 cut(s)	1145
BseMII	CTCAG	4 cut(s)	515, 929, 1246, 1367
BseNI	ACTGG	2 cut(s)	415, 829
BseRI	GAGGAG	1 cut(s)	998
BseXI	GCAGC	3 cut(s)	96, 1125, 1165
BseYI	CCCAGC	2 cut(s)	1028, 1134
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	104, 1285
BshNI	GGYRCC	2 cut(s)	243, 657
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	278, 692
BsiSI	CCGG	6 cut(s)	7, 105, 230, 247, 644, 661
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	6 cut(s)	13, 213, 236, 627, 650, 1109
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	1255
BsnI	GGCC	2 cut(s)	104, 1285
Bsp1286I	GDGCHC	2 cut(s)	278, 692
Bsp143I	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
Bsp19I	CCATGG	1 cut(s)	1055
BspACI	CCGC	6 cut(s)	21, 38, 62, 186, 313, 727
BspANI	GGCC	2 cut(s)	104, 1285
BspCNI	CTCAG	4 cut(s)	514, 928, 1245, 1366
BspFNI	CGCG	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	1143
BspPI	GGATC	1 cut(s)	1313
BspT107I	GGYRCC	2 cut(s)	243, 657
BsrBI	CCGCTC	2 cut(s)	313, 727
BsrDI	GCAATG	1 cut(s)	1145
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	415, 829
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	5 cut(s)	81, 236, 606, 650, 1055
BssMI	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
BssNI	GRCGYC	1 cut(s)	1060
BssT1I	CCWWGG	2 cut(s)	81, 1055
Bst2UI	CCWGG	6 cut(s)	237, 462, 608, 651, 876, 1373
Bst6I	CTCTTC	1 cut(s)	1266
BstACI	GRCGYC	1 cut(s)	1060
BstAPI	GCANNNNNTGC	2 cut(s)	1025, 1147
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	4 cut(s)	501, 915, 1232, 1353
BstDSI	CCRYGG	1 cut(s)	1055
BstF5I	GGATG	2 cut(s)	289, 703
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	5 cut(s)	1025, 1238, 1300, 1321, 1328
BstMBI	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 1025, 1147
BstNI	CCWGG	6 cut(s)	237, 462, 608, 651, 876, 1373
BstNSI	RCATGY	2 cut(s)	448, 862
BstSCI	CCNGG	9 cut(s)	104, 228, 235, 460, 606, 642, 649, 874, 1371
BstSFI	CTRYAG	2 cut(s)	1044, 1139
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	96, 1125, 1165
BstX2I	RGATCY	3 cut(s)	1022, 1235, 1297
BstYI	RGATCY	3 cut(s)	1022, 1235, 1297
BsuRI	GGCC	2 cut(s)	104, 1285
BtgI	CCRYGG	1 cut(s)	1055
BtsCI	GGATG	2 cut(s)	289, 703
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	4 cut(s)	54, 62, 433, 847
Cac8I	GCNNGC	1 cut(s)	568
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	133, 967
CseI	GACGC	1 cut(s)	1049
CsiI	ACCWGGT	1 cut(s)	1371
Csp6I	GTAC	4 cut(s)	304, 718, 1041, 1229
CviAII	CATG	8 cut(s)	319, 445, 559, 596, 733, 859, 1056, 1076
CviQI	GTAC	4 cut(s)	304, 718, 1041, 1229
DdeI	CTNAG	4 cut(s)	501, 915, 1232, 1353
DpnI	GATC	5 cut(s)	1024, 1237, 1299, 1320, 1327
DpnII	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	1266
EarI	CTCTTC	1 cut(s)	1266
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	81, 1055
Eco47I	GGWCC	2 cut(s)	133, 967
Eco57I	CTGAAG	2 cut(s)	993, 1247
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	1087
EcoRII	CCWGG	6 cut(s)	235, 460, 606, 649, 874, 1371
EcoT14I	CCWWGG	2 cut(s)	81, 1055
ErhI	CCWWGG	2 cut(s)	81, 1055
FaeI	CATG	8 cut(s)	322, 448, 562, 599, 736, 862, 1059, 1079
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	8 cut(s)	318, 444, 558, 595, 732, 858, 1055, 1075
FauI	CCCGC	1 cut(s)	193
FblI	GTMKAC	2 cut(s)	383, 797
Fnu4HI	GCNGC	6 cut(s)	38, 110, 314, 728, 1139, 1179
FokI	GGATG	2 cut(s)	276, 690
Fsp4HI	GCNGC	6 cut(s)	38, 110, 314, 728, 1139, 1179
FspBI	CTAG	2 cut(s)	1104, 1323
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	6 cut(s)	38, 110, 314, 728, 1139, 1179
GsaI	CCCAGC	2 cut(s)	1032, 1138
HaeIII	GGCC	2 cut(s)	104, 1285
HapII	CCGG	6 cut(s)	7, 105, 230, 247, 644, 661
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	1060
Hin1II	CATG	8 cut(s)	322, 448, 562, 599, 736, 862, 1059, 1079
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	2 cut(s)	384, 798
HindII	GTYRAC	2 cut(s)	384, 798
HindIII	AAGCTT	3 cut(s)	347, 761, 1005
HinfI	GANTC	6 cut(s)	296, 322, 356, 710, 736, 770
HpaII	CCGG	6 cut(s)	7, 105, 230, 247, 644, 661
HphI	GGTGA	2 cut(s)	450, 864
Hpy166II	GTNNAC	3 cut(s)	384, 798, 1160
Hpy188I	TCNGA	4 cut(s)	400, 814, 1099, 1235
Hpy188III	TCNNGA	6 cut(s)	122, 293, 342, 707, 756, 1293
Hpy8I	GTNNAC	3 cut(s)	384, 798, 1160
HpyAV	CCTTC	2 cut(s)	217, 631
HpyCH4V	TGCA	8 cut(s)	287, 454, 583, 701, 868, 1019, 1141, 1150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 1025, 1147
HpyF3I	CTNAG	4 cut(s)	501, 915, 1232, 1353
Hsp92I	GRCGYC	1 cut(s)	1060
Hsp92II	CATG	8 cut(s)	322, 448, 562, 599, 736, 862, 1059, 1079
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
Lsp1109I	GCAGC	3 cut(s)	96, 1125, 1165
LweI	GCATC	6 cut(s)	82, 274, 401, 688, 815, 1165
MabI	ACCWGGT	1 cut(s)	1371
MaeI	CTAG	2 cut(s)	1104, 1323
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	5 cut(s)	1024, 1237, 1299, 1320, 1327
MbiI	CCGCTC	2 cut(s)	313, 727
MboI	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
MboII	GAAGA	6 cut(s)	229, 520, 643, 934, 1253, 1384
MflI	RGATCY	3 cut(s)	1022, 1235, 1297
MhlI	GDGCHC	2 cut(s)	278, 692
MluCI	AATT	3 cut(s)	991, 1087, 1387
MlyI	GAGTC	2 cut(s)	290, 704
MroXI	GAANNNNTTC	1 cut(s)	1111
MseI	TTAA	1 cut(s)	578
MspA1I	CMGCKG	2 cut(s)	1138, 1357
MspI	CCGG	6 cut(s)	7, 105, 230, 247, 644, 661
MspR9I	CCNGG	9 cut(s)	106, 230, 237, 462, 608, 644, 651, 876, 1373
Mva1269I	GAATGC	1 cut(s)	1255
MvaI	CCWGG	6 cut(s)	237, 462, 608, 651, 876, 1373
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	194, 1025, 1147
NciI	CCSGG	3 cut(s)	106, 230, 644
NcoI	CCATGG	1 cut(s)	1055
NdeII	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
NlaIII	CATG	8 cut(s)	322, 448, 562, 599, 736, 862, 1059, 1079
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	2 cut(s)	448, 862
PctI	GAATGC	1 cut(s)	1255
PdmI	GAANNNNTTC	1 cut(s)	1111
PfeI	GAWTC	4 cut(s)	322, 356, 736, 770
PkrI	GCNGC	6 cut(s)	39, 111, 315, 729, 1140, 1180
PleI	GAGTC	2 cut(s)	290, 704
PpsI	GAGTC	2 cut(s)	290, 704
PpuMI	RGGWCCY	1 cut(s)	967
Psp5II	RGGWCCY	1 cut(s)	967
Psp6I	CCWGG	6 cut(s)	235, 460, 606, 649, 874, 1371
PspFI	CCCAGC	2 cut(s)	1028, 1134
PspGI	CCWGG	6 cut(s)	235, 460, 606, 649, 874, 1371
PspPI	GGNCC	2 cut(s)	133, 967
PspPPI	RGGWCCY	1 cut(s)	967
PstI	CTGCAG	1 cut(s)	1143
PsuI	RGATCY	3 cut(s)	1022, 1235, 1297
PvuII	CAGCTG	2 cut(s)	1138, 1357
RsaI	GTAC	4 cut(s)	305, 719, 1042, 1230
RsaNI	GTAC	4 cut(s)	304, 718, 1041, 1229
SalI	GTCGAC	2 cut(s)	382, 796
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	6 cut(s)	38, 110, 314, 728, 1139, 1179
Sau3AI	GATC	5 cut(s)	1022, 1235, 1297, 1318, 1325
Sau96I	GGNCC	2 cut(s)	133, 967
ScaI	AGTACT	3 cut(s)	305, 719, 1042
SchI	GAGTC	2 cut(s)	290, 704
ScrFI	CCNGG	9 cut(s)	106, 230, 237, 462, 608, 644, 651, 876, 1373
SduI	GDGCHC	2 cut(s)	278, 692
SexAI	ACCWGGT	1 cut(s)	1371
SfaNI	GCATC	6 cut(s)	82, 274, 401, 688, 815, 1165
SfcI	CTRYAG	2 cut(s)	1044, 1139
SinI	GGWCC	2 cut(s)	133, 967
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	991, 1087, 1387
SsiI	CCGC	6 cut(s)	21, 38, 62, 186, 313, 727
SspMI	CTAG	2 cut(s)	1104, 1323
StyD4I	CCNGG	9 cut(s)	104, 228, 235, 460, 606, 642, 649, 874, 1371
StyI	CCWWGG	2 cut(s)	81, 1055
TaqI	TCGA	3 cut(s)	383, 797, 972
TasI	AATT	3 cut(s)	991, 1087, 1387
TatI	WGTACW	3 cut(s)	303, 717, 1040
TauI	GCSGC	3 cut(s)	40, 316, 730
TfiI	GAWTC	4 cut(s)	322, 356, 736, 770
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	4 cut(s)	54, 62, 433, 847
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	3 cut(s)	109, 1138, 1178
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	335, 584, 749
TspRI	CASTG	4 cut(s)	54, 62, 433, 847
VpaK11BI	GGWCC	2 cut(s)	133, 967
XapI	RAATTY	1 cut(s)	1087
XceI	RCATGY	2 cut(s)	448, 862
XmiI	GTMKAC	2 cut(s)	383, 797
XmnI	GAANNNNTTC	1 cut(s)	1111
XspI	CTAG	2 cut(s)	1104, 1323
ZrmI	AGTACT	3 cut(s)	305, 719, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.