Rmu_sc0007456.1_g000007

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007456.1
OG0003697
Physical Location & Seq
Forward (+)
46662 .. 47656
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007456.1_g000007.1.cds

Sequence Viewer

Length: 594 bp
atgagccggtcgttggtgggcggtggaggtcacgcgccgcttttcacagtgtcgcagtgggcggagatggagcatcaagccttggttttcaagtatctcaaggccgggctgcctgttcctcctgacctcttggtccctattcgcaacagcttcaacctcatctaccccgatttcctgcgtcaccccgcctctttggcttatgcttccttctgtgggaagaaaatagacccggagccagggaggtgccggaggacagatggcaagaagtggaggtgctctaaagatgcacatccagactccaagtactgtgagcggcacatgaatcgtggtcgctaccgttcaagaaagcttgtggaatcacaaactgcttctcaatctttgtcgactgtggcatcgtcagacataaggactgggagccgtagccacagtgggagcttccaaaacatgcccttgcactcaccaggaaatagtggaagtctatgctttggaagtgatgtatctcagttgaagatggagcctataccctacgggatagtgaagcgtggaaataggtatatctattaccttgttggtttattagttggattgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

197

Amino Acids

21.9

Weight (kDa)

9.79

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 383
AccII CGCG 1 cut(s) 35
AciI CCGC 5 cut(s) 21, 38, 62, 186, 313
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 3 cut(s) 13, 213, 236
AgsI TTSAA 4 cut(s) 91, 154, 342, 508
AjnI CCWGG 2 cut(s) 235, 460
AluBI AGCT 3 cut(s) 150, 349, 435
AluI AGCT 3 cut(s) 150, 349, 435
Alw21I GWGCWC 1 cut(s) 278
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 106, 230
AsuHPI GGTGA 2 cut(s) 173, 450
AvaII GGWCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 96
BccI CCATC 3 cut(s) 61, 251, 505
BceAI ACGGC 1 cut(s) 402
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 237, 462
BcnI CCSGG 2 cut(s) 106, 230
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 3 cut(s) 38, 110, 314
BlsI GCNGC 3 cut(s) 39, 111, 315
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 106, 230, 237, 462
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 5 cut(s) 135, 234, 245, 416, 516
BmrFI CCNGG 4 cut(s) 106, 230, 237, 462
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 3 cut(s) 82, 274, 401
BmuI ACTGGG 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 106, 230
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 81, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 213, 236
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 415
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 2 cut(s) 237, 462
BseDI CCNNGG 2 cut(s) 81, 236
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 13, 213, 236
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 4 cut(s) 7, 105, 230, 247
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 13, 213, 236
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 278
BspACI CCGC 5 cut(s) 21, 38, 62, 186, 313
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 5 cut(s) 135, 234, 245, 416, 516
BspT107I GGYRCC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 81, 236
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 237, 462
Bst4CI ACNGT 5 cut(s) 49, 308, 338, 388, 428
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 2 cut(s) 237, 462
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 4 cut(s) 104, 228, 235, 460
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 3 cut(s) 54, 62, 433
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 304
CviAII CATG 3 cut(s) 319, 445, 591
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 501
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 235, 460
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 3 cut(s) 322, 448, 594
FaiI YATR 8 cut(s) 201, 320, 404, 446, 481, 521, 555, 592
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 318, 444, 590
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 3 cut(s) 38, 110, 314
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 38, 110, 314
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 38, 110, 314
HaeIII GGCC 1 cut(s) 104
HapII CCGG 4 cut(s) 7, 105, 230, 247
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 322, 448, 594
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 296, 322, 356
HpaII CCGG 4 cut(s) 7, 105, 230, 247
HphI GGTGA 2 cut(s) 173, 450
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 3 cut(s) 122, 293, 342
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 5 cut(s) 49, 308, 338, 388, 428
HpyCH4V TGCA 2 cut(s) 287, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 501
Hsp92II CATG 3 cut(s) 322, 448, 594
HspAI GCGC 1 cut(s) 35
LmnI GCTCC 5 cut(s) 70, 232, 414, 432, 514
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 3 cut(s) 82, 274, 401
MaeIII GTNAC 2 cut(s) 29, 179
MbiI CCGCTC 1 cut(s) 313
MboII GAAGA 2 cut(s) 229, 520
MhlI GDGCHC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 8 cut(s) 20, 129, 137, 167, 199, 234, 243, 264
MspI CCGG 4 cut(s) 7, 105, 230, 247
MspR9I CCNGG 4 cut(s) 106, 230, 237, 462
MvaI CCWGG 2 cut(s) 237, 462
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 2 cut(s) 106, 230
NlaIII CATG 3 cut(s) 322, 448, 594
NlaIV GGNNCC 5 cut(s) 135, 234, 245, 416, 516
NmuCI GTSAC 2 cut(s) 29, 179
NspI RCATGY 1 cut(s) 448
PfeI GAWTC 2 cut(s) 322, 356
PkrI GCNGC 3 cut(s) 39, 111, 315
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 235, 460
PspGI CCWGG 2 cut(s) 235, 460
PspN4I GGNNCC 5 cut(s) 135, 234, 245, 416, 516
PspPI GGNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SalI GTCGAC 1 cut(s) 382
SatI GCNGC 3 cut(s) 38, 110, 314
Sau96I GGNCC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 106, 230, 237, 462
SduI GDGCHC 1 cut(s) 278
SfaNI GCATC 3 cut(s) 82, 274, 401
SinI GGWCC 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 5 cut(s) 21, 38, 62, 186, 313
StyD4I CCNGG 4 cut(s) 104, 228, 235, 460
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 5 cut(s) 49, 308, 338, 388, 428
TaqI TCGA 1 cut(s) 383
TatI WGTACW 1 cut(s) 303
TauI GCSGC 2 cut(s) 40, 316
TfiI GAWTC 2 cut(s) 322, 356
TscAI CASTG 3 cut(s) 54, 62, 433
TseFI GTSAC 2 cut(s) 29, 179
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 2 cut(s) 29, 179
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 3 cut(s) 54, 62, 433
VpaK11BI GGWCC 1 cut(s) 133
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.