Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003697

Physical Location & Seq

Genomic Coordinates Forward (+)

2337057 .. 2342732

Gene Structure 5676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGCGGGTCGTCGGTGGGCAACGGAGGCCTCGCGCCGCCTTTCACAGTTGCGCAGTGGGCGGAGATGGAACATCAAGCTTTGATATTCAAATATCTCAAAGCTGGGCTGCCTGTTCCTCCTGACCTCCTTGGTCCCATTCGCACCAGTTTCAACCTCATCTCTTCCAATTTCTTGCGCCACCACCCCACCTTGGGTTATACATCCTATTGCGGTAAGAAAATAGACCCAGAGCCAGGGCGTTGCCGGAGGACAGATGGCAAGAAGTGGAGGTGCTCCAAAGATGCACATCCAGACTCCAAGTATTGTGAGCGGCACATGAACCGAGGTCGCTATCGTTCAAGAAAGCTTGTGGAATCACAAACTACCTCTCAATCTTCATCAACTGTGACGTCAGACAGTGTGATTGGGAGCTCTAGCCACAGTGGGAGCTTCCAAAACATGCCCTTGCATTCAATGGTAAATAGTGGGGGTCTATGCTTTGGAAGCAATGTATCTCAGTTGAAGATGGAGCCTATACCCTATGGGATAGGTAACAGTGGAAACAGGGGGCGCAATGGAGCAGAAGAGCACAATTTCATGTCAGAACCTTCTGGGAGTGTGAGGTGTCTTGGGATGGACAGTACTGTAGACAGTCCATGGCATCTTATGGTGCCTCGAGTTTCCTTGAAATCGGAATCAAAAAATTGTTCTCTTTTGCTAAACAACAGCTCCCAGCTAGAGACATTGCAACATACTGAACCATTGACTGTTGATGCTGCCATCACTAAACAGCAGCAACATCAGTATGTCGGTGGACAGTTTGGCTTTCCAGGATCTCTAAAACACGAACAGAATTCGCTTCAGCCTTTCTTCGATGAGTGGCCTAAGTCGAGGGATCTTGGTTTCCATCTAAGTGATCATAGATCCACCAATACCTTAACTGCAACTCAACTGTCAATGTCTAATGCAATGGCCCCCTCCAAATTCTTCGCAAGGAGTGCTGACTCACCTACTGATGCCTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

337

Amino Acids

36.95

Weight (kDa)

8.92

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_5g23900 FvH4_7g34250 FvH4_7g34250
malus_domestica	MD00G1001000.v1.1 MD06G1014700.v1.1
prunus_persica	Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.2G329200_v2.0.a1 Prupe.5G021400_v2.0.a1
pyrus_communis	pycom06g01200 pycom16g25430
rosa_chinensis	RchiOBHm_Chr1g0384601 RchiOBHm_Chr7g0213331
rosa_laevigata	RLG00000002814 RLG00000026028
rosa_multiflora	Rmu_sc0006005.1_g000018 Rmu_sc0007456.1_g000007 Rmu_sc0011180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246090 Rroxscaffold_4G00276550
rosa_rugosa	Rorug01G0450000 Rorug07G0141000 Rorug07G0141100
rosa_samantha	Rh1AG474500 Rh1BG432500 Rh1DG465200 Rh7AG272600 Rh7BG268300 Rh7CG292000 Rh7DG280600
rosa_wichuraiana	Rw1G039810 Rw7G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	652
AccBSI	CCGCTC	2 cut(s)	6, 313
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	6, 38, 62, 213, 313
AclWI	GGATC	3 cut(s)	823, 885, 900
AcsI	RAATTY	2 cut(s)	835, 965
AcuI	CTGAAG	1 cut(s)	827
AcyI	GRCGYC	1 cut(s)	392
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	3 cut(s)	193, 194, 236
AgsI	TTSAA	6 cut(s)	91, 154, 342, 456, 505, 670
AjnI	CCWGG	2 cut(s)	235, 811
AluBI	AGCT	7 cut(s)	80, 104, 349, 414, 432, 711, 718
AluI	AGCT	7 cut(s)	80, 104, 349, 414, 432, 711, 718
Alw21I	GWGCWC	3 cut(s)	278, 416, 573
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	3 cut(s)	823, 885, 900
Ama87I	CYCGRG	1 cut(s)	657
AoxI	GGCC	3 cut(s)	28, 863, 954
ApeKI	GCWGC	3 cut(s)	109, 758, 775
ApoI	RAATTY	2 cut(s)	835, 965
AspLEI	GCGC	4 cut(s)	37, 55, 180, 555
AspS9I	GGNCC	2 cut(s)	134, 955
AsuHPI	GGTGA	1 cut(s)	981
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	416
Bbv12I	GWGCWC	3 cut(s)	278, 416, 573
BbvI	GCAGC	3 cut(s)	96, 745, 787
BccI	CCATC	6 cut(s)	61, 251, 502, 610, 770, 897
BciT130I	CCWGG	2 cut(s)	237, 813
BclI	TGATCA	1 cut(s)	898
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	2 cut(s)	417, 719
BfmI	CTRYAG	1 cut(s)	627
BisI	GCNGC	5 cut(s)	38, 110, 314, 759, 776
BlsI	GCNGC	5 cut(s)	39, 111, 315, 760, 777
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	2 cut(s)	237, 813
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	657
BmgT120I	GGNCC	2 cut(s)	134, 955
BmiI	GGNNCC	4 cut(s)	136, 513, 654, 957
BmrFI	CCNGG	2 cut(s)	237, 813
BmsI	GCATC	4 cut(s)	274, 652, 745, 988
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	130, 192, 236, 325, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 194, 236
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	4 cut(s)	496, 562, 725, 957
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	237, 813
BseDI	CCNNGG	5 cut(s)	130, 192, 236, 325, 638
BseGI	GGATG	3 cut(s)	203, 289, 621
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	193, 194, 236
BseMI	GCAATG	4 cut(s)	496, 562, 725, 957
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	96, 745, 787
BseYI	CCCAGC	2 cut(s)	104, 714
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	3 cut(s)	30, 865, 956
BshNI	GGYRCC	1 cut(s)	652
BsiHKAI	GWGCWC	3 cut(s)	278, 416, 573
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	193, 194, 236
BsmAI	GTCTC	1 cut(s)	716
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	30, 865, 956
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	3 cut(s)	278, 416, 573
Bsp143I	GATC	4 cut(s)	815, 877, 898, 905
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	5 cut(s)	6, 38, 62, 213, 313
BspANI	GGCC	3 cut(s)	30, 865, 956
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	4 cut(s)	136, 513, 654, 957
BspPI	GGATC	3 cut(s)	823, 885, 900
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	652
BsrBI	CCGCTC	2 cut(s)	6, 313
BsrDI	GCAATG	4 cut(s)	496, 562, 725, 957
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	5 cut(s)	130, 192, 236, 325, 638
BssMI	GATC	4 cut(s)	815, 877, 898, 905
BssNI	GRCGYC	1 cut(s)	392
BssT1I	CCWWGG	3 cut(s)	130, 192, 638
Bst2UI	CCWGG	2 cut(s)	237, 813
Bst6I	CTCTTC	2 cut(s)	169, 561
BstACI	GRCGYC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstDEI	CTNAG	3 cut(s)	498, 867, 893
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	3 cut(s)	203, 289, 621
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	4 cut(s)	37, 55, 180, 555
BstKTI	GATC	4 cut(s)	818, 880, 901, 908
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	4 cut(s)	815, 877, 898, 905
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 59, 486, 980
BstNI	CCWGG	2 cut(s)	237, 813
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	235, 811
BstSFI	CTRYAG	1 cut(s)	627
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	96, 745, 787
BstX2I	RGATCY	3 cut(s)	815, 877, 905
BstYI	RGATCY	3 cut(s)	815, 877, 905
BsuRI	GGCC	3 cut(s)	30, 865, 956
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	3 cut(s)	203, 289, 621
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	4 cut(s)	62, 406, 430, 544
CfoI	GCGC	4 cut(s)	37, 55, 180, 555
Cfr13I	GGNCC	2 cut(s)	134, 955
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	4 cut(s)	319, 442, 580, 639
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	498, 867, 893
DpnI	GATC	4 cut(s)	817, 879, 900, 907
DpnII	GATC	4 cut(s)	815, 877, 898, 905
Eam1104I	CTCTTC	2 cut(s)	169, 561
EarI	CTCTTC	2 cut(s)	169, 561
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	414
Eco130I	CCWWGG	3 cut(s)	130, 192, 638
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	827
Eco88I	CYCGRG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	235, 811
EcoT14I	CCWWGG	3 cut(s)	130, 192, 638
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	3 cut(s)	130, 192, 638
FaeI	CATG	4 cut(s)	322, 445, 583, 642
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	4 cut(s)	318, 441, 579, 638
FbaI	TGATCA	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	5 cut(s)	38, 110, 314, 759, 776
FokI	GGATG	3 cut(s)	190, 276, 628
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	5 cut(s)	38, 110, 314, 759, 776
FspBI	CTAG	2 cut(s)	417, 719
FspI	TGCGCA	1 cut(s)	54
GlaI	GCGC	4 cut(s)	36, 54, 179, 554
GluI	GCNGC	5 cut(s)	38, 110, 314, 759, 776
GsaI	CCCAGC	2 cut(s)	108, 718
HaeIII	GGCC	3 cut(s)	30, 865, 956
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	4 cut(s)	37, 55, 180, 555
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	322, 445, 583, 642
Hin6I	GCGC	4 cut(s)	35, 53, 178, 553
HinP1I	GCGC	4 cut(s)	35, 53, 178, 553
HindIII	AAGCTT	2 cut(s)	78, 347
HinfI	GANTC	4 cut(s)	296, 356, 677, 986
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	981
Hpy166II	GTNNAC	2 cut(s)	631, 797
Hpy188I	TCNGA	3 cut(s)	397, 586, 676
Hpy188III	TCNNGA	3 cut(s)	122, 293, 342
Hpy8I	GTNNAC	2 cut(s)	631, 797
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	600
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	5 cut(s)	287, 451, 730, 926, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 59, 486, 980
HpyF3I	CTNAG	3 cut(s)	498, 867, 893
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	4 cut(s)	322, 445, 583, 642
HspAI	GCGC	4 cut(s)	35, 53, 178, 553
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	815, 877, 898, 905
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	6 cut(s)	281, 411, 429, 511, 560, 716
Lsp1109I	GCAGC	3 cut(s)	96, 745, 787
LweI	GCATC	4 cut(s)	274, 652, 745, 988
MaeI	CTAG	2 cut(s)	417, 719
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	388, 533
MalI	GATC	4 cut(s)	817, 879, 900, 907
MbiI	CCGCTC	2 cut(s)	6, 313
MboI	GATC	4 cut(s)	815, 877, 898, 905
MboII	GAAGA	6 cut(s)	156, 369, 517, 578, 844, 961
MflI	RGATCY	3 cut(s)	815, 877, 905
MhlI	GDGCHC	3 cut(s)	278, 416, 573
MluCI	AATT	5 cut(s)	169, 574, 685, 835, 965
MlyI	GAGTC	2 cut(s)	290, 980
MseI	TTAA	1 cut(s)	920
MslI	CAYNNNNRTG	2 cut(s)	786, 894
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	237, 813
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	237, 813
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	27, 59, 486, 980
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	4 cut(s)	815, 877, 898, 905
NlaIII	CATG	4 cut(s)	322, 445, 583, 642
NlaIV	GGNNCC	4 cut(s)	136, 513, 654, 957
NmuCI	GTSAC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	54
NspI	RCATGY	1 cut(s)	445
PaeR7I	CTCGAG	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	561
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	356, 677
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	5 cut(s)	39, 111, 315, 760, 777
PleI	GAGTC	2 cut(s)	290, 980
PpsI	GAGTC	2 cut(s)	290, 980
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	235, 811
PspFI	CCCAGC	2 cut(s)	104, 714
PspGI	CCWGG	2 cut(s)	235, 811
PspN4I	GGNNCC	4 cut(s)	136, 513, 654, 957
PspPI	GGNCC	2 cut(s)	134, 955
PspXI	VCTCGAGB	1 cut(s)	657
PsuI	RGATCY	3 cut(s)	815, 877, 905
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
RseI	CAYNNNNRTG	2 cut(s)	786, 894
SacI	GAGCTC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	920
SatI	GCNGC	5 cut(s)	38, 110, 314, 759, 776
Sau3AI	GATC	4 cut(s)	815, 877, 898, 905
Sau96I	GGNCC	2 cut(s)	134, 955
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	2 cut(s)	290, 980
ScrFI	CCNGG	2 cut(s)	237, 813
SduI	GDGCHC	3 cut(s)	278, 416, 573
SfaNI	GCATC	4 cut(s)	274, 652, 745, 988
SfcI	CTRYAG	1 cut(s)	627
Sfr274I	CTCGAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	786, 894
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
Sse9I	AATT	5 cut(s)	169, 574, 685, 835, 965
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	5 cut(s)	6, 38, 62, 213, 313
SspMI	CTAG	2 cut(s)	417, 719
SstI	GAGCTC	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	235, 811
StyI	CCWWGG	3 cut(s)	130, 192, 638
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	3 cut(s)	658, 855, 872
TasI	AATT	5 cut(s)	169, 574, 685, 835, 965
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	40, 316
TfiI	GAWTC	2 cut(s)	356, 677
Tru1I	TTAA	1 cut(s)	920
Tru9I	TTAA	1 cut(s)	920
TscAI	CASTG	4 cut(s)	62, 406, 430, 544
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	109, 758, 775
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	335, 369, 568
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	4 cut(s)	62, 406, 430, 544
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	835, 965
XceI	RCATGY	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	2 cut(s)	417, 719
ZraI	GACGTC	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.