FvH4_5g25371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011566
Physical Location & Seq
Forward (+)
16902515 .. 16903911
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25371.t1

Sequence Viewer

Length: 282 bp
ATGGAGAAGGGAGGAAAGGATTTTATCCTCCCCGAGTTATTGAACTTGGAAGAGAGGAGCAGCTCTGGATGGGGAAGCTTCTGTCAAAATTTCAGGTTGATCGGAGCAAGGGAAGGTGGTGAACCGGTGGTCGGTAGCGGCGGCGGTTTGGAATTTTCCGGCGGCCGGTTCGGAGACTTTCCGGCCGGTTCTCAGGGTGAGGCCGGCGGCGTTGGATCCACTTTGGATCATTCGCTGTCCCAAGTTGTAGAGGTTGTTGAGGAATTGATTGCATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.64

Weight (kDa)

4.39

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 138, 141, 144, 162, 207
AclWI GGATC 3 cut(s) 210, 223, 234
AcoI YGGCCR 2 cut(s) 163, 183
AcsI RAATTY 2 cut(s) 88, 152
AfiI CCNNNNNNNGG 2 cut(s) 131, 165
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 63, 78
AluI AGCT 2 cut(s) 63, 78
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 3 cut(s) 210, 223, 234
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 3 cut(s) 163, 183, 201
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 2 cut(s) 88, 152
AsiGI ACCGGT 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 131, 209
AvaI CYCGRG 1 cut(s) 32
BamHI GGATCC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 5 cut(s) 61, 139, 142, 163, 208
BlsI GCNGC 5 cut(s) 62, 140, 143, 164, 209
BmeT110I CYCGRG 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 165
Bse118I RCCGGY 4 cut(s) 124, 165, 185, 203
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 131, 165
BseMII CTCAG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 70
BseX3I CGGCCG 2 cut(s) 163, 183
BseXI GCAGC 1 cut(s) 72
Bsh1285I CGRYCG 2 cut(s) 166, 186
BshFI GGCC 3 cut(s) 165, 185, 203
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 2 cut(s) 166, 186
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 6 cut(s) 125, 159, 166, 182, 186, 204
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 131, 165
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 165, 185, 203
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 3 cut(s) 99, 215, 226
BspACI CCGC 5 cut(s) 138, 141, 144, 162, 207
BspANI GGCC 3 cut(s) 165, 185, 203
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 3 cut(s) 210, 223, 234
BsrFI RCCGGY 4 cut(s) 124, 165, 185, 203
BssAI RCCGGY 4 cut(s) 124, 165, 185, 203
BssMI GATC 3 cut(s) 99, 215, 226
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 3 cut(s) 102, 218, 229
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 99, 215, 226
BstMCI CGRYCG 2 cut(s) 166, 186
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BstZI CGGCCG 2 cut(s) 163, 183
BsuRI GGCC 3 cut(s) 165, 185, 203
BtsCI GGATG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 205
Cfr10I RCCGGY 4 cut(s) 124, 165, 185, 203
CspAI ACCGGT 1 cut(s) 124
CviJI RGCY 5 cut(s) 63, 78, 165, 185, 203
CviKI_1 RGCY 5 cut(s) 63, 78, 165, 185, 203
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 101, 217, 228
DpnII GATC 3 cut(s) 99, 215, 226
EaeI YGGCCR 2 cut(s) 163, 183
EagI CGGCCG 2 cut(s) 163, 183
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EclXI CGGCCG 2 cut(s) 163, 183
Eco52I CGGCCG 2 cut(s) 163, 183
Eco88I CYCGRG 1 cut(s) 32
FaqI GGGAC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 61, 139, 142, 163, 208
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 5 cut(s) 61, 139, 142, 163, 208
GluI GCNGC 5 cut(s) 61, 139, 142, 163, 208
HaeIII GGCC 3 cut(s) 165, 185, 203
HapII CCGG 6 cut(s) 125, 159, 166, 182, 186, 204
HindIII AAGCTT 1 cut(s) 76
HpaII CCGG 6 cut(s) 125, 159, 166, 182, 186, 204
HphI GGTGA 2 cut(s) 131, 209
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 104, 173
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 192
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 99, 215, 226
LmnI GCTCC 2 cut(s) 57, 104
LpnPI CCDG 9 cut(s) 51, 79, 138, 172, 179, 179, 195, 199, 217
Lsp1109I GCAGC 1 cut(s) 72
MalI GATC 3 cut(s) 101, 217, 228
MboI GATC 3 cut(s) 99, 215, 226
MboII GAAGA 1 cut(s) 62
MflI RGATCY 1 cut(s) 215
MluCI AATT 3 cut(s) 88, 152, 263
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 6 cut(s) 5, 38, 48, 193, 244, 253
MroNI GCCGGC 1 cut(s) 203
MspI CCGG 6 cut(s) 125, 159, 166, 182, 186, 204
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 3 cut(s) 99, 215, 226
NgoMIV GCCGGC 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 5 cut(s) 62, 140, 143, 164, 209
PspN4I GGNNCC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 215
SatI GCNGC 5 cut(s) 61, 139, 142, 163, 208
Sau3AI GATC 3 cut(s) 99, 215, 226
SetI ASST 5 cut(s) 65, 80, 98, 118, 255
Sse9I AATT 3 cut(s) 88, 152, 263
SsiI CCGC 5 cut(s) 138, 141, 144, 162, 207
TasI AATT 3 cut(s) 88, 152, 263
TauI GCSGC 4 cut(s) 141, 144, 165, 210
TseI GCWGC 1 cut(s) 60
XapI RAATTY 2 cut(s) 88, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.