Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Forward (+)

29568327 .. 29573045

Gene Structure 4719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCTTGCAGGGTGGTCGACGAGAGGCTCGGCATCACTCGCAGATCTCGGCAGCGGCGTGCGGGGACCTCGGCGAGACTCGACGGGTGCTTGCGGGGGGCGGGGCAGGTCCGATTTTTTCGACCGCCGGTTCGGGGGCTTTCCGGTCGGTTCCGGTGGTTCCACCGCTGGTTCTGGGTTCCTTGAGGCTAAGGCTTCAATATGTGGGGCGGTGGATGTTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

7.4

Weight (kDa)

9.67

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	7 cut(s)	54, 61, 93, 100, 124, 165, 209
AcsI	RAATTY	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	222
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	2 cut(s)	65, 108
AvaII	GGWCC	2 cut(s)	65, 108
BbvI	GCAGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	96
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	52, 55
BlsI	GCNGC	2 cut(s)	53, 56
Bme18I	GGWCC	2 cut(s)	65, 108
BmgT120I	GGNCC	2 cut(s)	65, 108
BmiI	GGNNCC	4 cut(s)	66, 151, 160, 179
BmsI	GCATC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	2 cut(s)	142, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	2 cut(s)	124, 147
BsiEI	CGRYCG	2 cut(s)	124, 147
BsiSI	CCGG	3 cut(s)	127, 143, 153
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	7 cut(s)	54, 61, 93, 100, 124, 165, 209
BspLI	GGNNCC	4 cut(s)	66, 151, 160, 179
BspMI	ACCTGC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	6, 59, 91
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	43
BstMCI	CGRYCG	2 cut(s)	124, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	6, 59, 91
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	65, 108
CviJI	RGCY	4 cut(s)	27, 138, 188, 194
CviKI_1	RGCY	4 cut(s)	27, 138, 188, 194
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	65, 108
EcoO109I	RGGNCCY	1 cut(s)	65
FaiI	YATR	1 cut(s)	202
FaqI	GGGAC	1 cut(s)	78
FauI	CCCGC	3 cut(s)	54, 86, 93
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	52, 55
Fsp4HI	GCNGC	2 cut(s)	52, 55
GluI	GCNGC	2 cut(s)	52, 55
HapII	CCGG	3 cut(s)	127, 143, 153
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	3 cut(s)	127, 143, 153
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	2 cut(s)	22, 85
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	6 cut(s)	91, 140, 153, 156, 159, 166
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	41
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	17, 78, 178
MspA1I	CMGCKG	2 cut(s)	54, 167
MspI	CCGG	3 cut(s)	127, 143, 153
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	43
NlaIV	GGNNCC	4 cut(s)	66, 151, 160, 179
NmeAIII	GCCGAG	3 cut(s)	8, 27, 49
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	53, 56
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	65
PspN4I	GGNNCC	4 cut(s)	66, 151, 160, 179
PspPI	GGNCC	2 cut(s)	65, 108
PspPPI	RGGWCCY	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	43
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	52, 55
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	2 cut(s)	65, 108
SchI	GAGTC	1 cut(s)	71
SetI	ASST	2 cut(s)	70, 110
SfaNI	GCATC	1 cut(s)	41
SinI	GGWCC	2 cut(s)	65, 108
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	7 cut(s)	54, 61, 93, 100, 124, 165, 209
TaqI	TCGA	3 cut(s)	17, 80, 120
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	65, 108
XapI	RAATTY	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.