Rh1AG331700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011566
Physical Location & Seq
Reverse (-)
56701007 .. 56701273
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG331700.1

Sequence Viewer

Length: 267 bp
ATGTCGGCAGCACTCAGCAGGAAGCGTGTAGGGCTCTCGGCAGATGCTTGCAGGGCTGTCGACCTCGGCAGCACTTGGCAGATCTCGGCAGGGGCGTGCAGGGACCTCAGTAGGACTCAGCAGATGCTTGCAGAGGGCGGGGGCCGGTTCGATTTTTCCGACTGCCGGTTTCAGGGGTTTTCGGCCGGTTCAAATGGTTCCGCCGCTGGTTCTGGGTTCCTTGAGGCTAGGGCTTCAATATTTGAGGCGGTGGATGTTGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.08

Weight (kDa)

6.11

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AciI CCGC 4 cut(s) 138, 201, 204, 248
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 165, 172
AgsI TTSAA 2 cut(s) 192, 237
AoxI GGCC 2 cut(s) 142, 183
ApeKI GCWGC 2 cut(s) 8, 69
ApoI RAATTY 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 103, 142
AvaII GGWCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 20, 81
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BfaI CTAG 1 cut(s) 228
BglII AGATCT 1 cut(s) 81
BisI GCNGC 3 cut(s) 9, 70, 204
BlsI GCNGC 3 cut(s) 10, 71, 205
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 142
BmiI GGNNCC 4 cut(s) 104, 143, 199, 218
BmsI GCATC 2 cut(s) 34, 114
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 172
Bse118I RCCGGY 3 cut(s) 144, 165, 185
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 165, 172
BseMII CTCAG 3 cut(s) 28, 121, 131
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 20, 81
BsgI GTGCAG 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 144, 185
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 145, 166, 186
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 165, 172
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 144, 185
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 4 cut(s) 138, 201, 204, 248
BspANI GGCC 2 cut(s) 144, 185
BspCNI CTCAG 3 cut(s) 27, 120, 130
BspLI GGNNCC 4 cut(s) 104, 143, 199, 218
BsrFI RCCGGY 3 cut(s) 144, 165, 185
BssAI RCCGGY 3 cut(s) 144, 165, 185
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 49, 97, 129
BstDEI CTNAG 3 cut(s) 14, 107, 117
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 31, 53
BstV1I GCAGC 2 cut(s) 20, 81
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 144, 185
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 49, 97, 129
Cfr10I RCCGGY 3 cut(s) 144, 165, 185
Cfr13I GGNCC 2 cut(s) 103, 142
CviJI RGCY 6 cut(s) 34, 56, 144, 185, 227, 233
CviKI_1 RGCY 6 cut(s) 34, 56, 144, 185, 227, 233
DdeI CTNAG 3 cut(s) 14, 107, 117
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 183
EagI CGGCCG 1 cut(s) 183
EciI GGCGGA 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 36
FaqI GGGAC 1 cut(s) 116
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 9, 70, 204
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 9, 70, 204
FspBI CTAG 1 cut(s) 228
GluI GCNGC 3 cut(s) 9, 70, 204
HaeIII GGCC 2 cut(s) 144, 185
HapII CCGG 3 cut(s) 145, 166, 186
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 115
HpaII CCGG 3 cut(s) 145, 166, 186
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 51, 99, 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 53
HpyF3I CTNAG 3 cut(s) 14, 107, 117
Kzo9I GATC 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 20, 81
LweI GCATC 2 cut(s) 34, 114
MaeI CTAG 1 cut(s) 228
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 183, 238
MnlI CCTC 5 cut(s) 74, 116, 127, 217, 238
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 145, 166, 186
MwoI GCNNNNNNNGC 2 cut(s) 31, 53
NdeII GATC 1 cut(s) 81
NlaIV GGNNCC 4 cut(s) 104, 143, 199, 218
NmeAIII GCCGAG 3 cut(s) 17, 45, 65
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 156
PkrI GCNGC 3 cut(s) 10, 71, 205
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 104, 143, 199, 218
PspPI GGNCC 2 cut(s) 103, 142
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 81
SalI GTCGAC 1 cut(s) 59
SatI GCNGC 3 cut(s) 9, 70, 204
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 2 cut(s) 103, 142
SchI GAGTC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 66, 108
SfaNI GCATC 2 cut(s) 34, 114
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 261
SsiI CCGC 4 cut(s) 138, 201, 204, 248
SspI AATATT 1 cut(s) 240
SspMI CTAG 1 cut(s) 228
TaqI TCGA 2 cut(s) 60, 150
TasI AATT 1 cut(s) 261
TauI GCSGC 1 cut(s) 206
TseI GCWGC 2 cut(s) 8, 69
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.