RLG00000034050

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011566
Physical Location & Seq
Forward (+)
35853487 .. 35854483
997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034050

Sequence Viewer

Length: 501 bp
ATGTCCGAGCACCTTAGAATCCGAAGGCACTTAACGATCATAAGTCATAGGTTCCGGGGGTTCATATTGTGGTCTCTAACATTGGTCACAGGGAGCCAATTCGCATTGTTGCTCATCACGACCAAGTCCAGTGCCGCTATCGATTATATGCATATTTTCAGAGTTGGGGAACTTGTGTTGTGCTCCATAACTTTGGTTACCGGCCTCCTTCTCTTACTCCGCAGCGCAACTAAAATAACTCACAAGGCCCAAGCAGTGGCATGCCTAGCTACCAAGTGGCATGTTTGTGCCACACTGGAGTCGTTTGATGGAACCGAGTTGGATTCTCCAACGGCTCAAATCGCGAATGATCCAGCATTTTATTTTAACACCGACGAAGAATCAGACGGGGATTTGGTTAGTGATGAAGATAATGACTTGGAAAACACCAAGATGGTGCCATCTTGTTCATCTCATACCATTTCTTACCAAAAACGTCAAGCTCTGGGTAAGCCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

167

Amino Acids

18.45

Weight (kDa)

6.14

Isoelectric Point (pI)

60.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 1 - 162 7.8e-56 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 1 cut(s) 344
AciI CCGC 2 cut(s) 135, 220
AclWI GGATC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 256
AluBI AGCT 2 cut(s) 269, 482
AluI AGCT 2 cut(s) 269, 482
Alw21I GWGCWC 2 cut(s) 12, 185
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 344
AoxI GGCC 2 cut(s) 202, 246
ApeKI GCWGC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 436
Bbv12I GWGCWC 2 cut(s) 12, 185
BbvI GCAGC 1 cut(s) 234
BccI CCATC 3 cut(s) 302, 427, 448
BceAI ACGGC 1 cut(s) 348
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 266
BisI GCNGC 2 cut(s) 135, 223
BlsI GCNGC 2 cut(s) 136, 224
Bme1390I CCNGG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 4 cut(s) 53, 95, 313, 438
BmrFI CCNGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 129, 300
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 129, 300
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 2 cut(s) 204, 248
BshNI GGYRCC 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 12, 185
BsiSI CCGG 2 cut(s) 55, 201
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 204, 248
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 12, 185
Bsp143I GATC 2 cut(s) 36, 349
Bsp68I TCGCGA 1 cut(s) 344
BspACI CCGC 2 cut(s) 135, 220
BspANI GGCC 2 cut(s) 204, 248
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 1 cut(s) 344
BspLI GGNNCC 4 cut(s) 53, 95, 313, 438
BspPI GGATC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 129, 300
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 36, 349
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 14
BstEII GGTNACC 1 cut(s) 196
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 39, 352
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 36, 349
BstMWI GCNNNNNNNGC 2 cut(s) 266, 341
BstNSI RCATGY 2 cut(s) 264, 284
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 54
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 193
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 2 cut(s) 204, 248
BsuTUI ATCGAT 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 136, 261, 293
BtuMI TCGCGA 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 141
CviAII CATG 2 cut(s) 261, 281
CviJI RGCY 7 cut(s) 96, 204, 248, 269, 335, 482, 493
CviKI_1 RGCY 7 cut(s) 96, 204, 248, 269, 335, 482, 493
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 38, 351
DpnII GATC 2 cut(s) 36, 349
Eco31I GGTCTC 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 153
FaeI CATG 2 cut(s) 264, 284
FatI CATG 2 cut(s) 260, 280
Fnu4HI GCNGC 2 cut(s) 135, 223
Fsp4HI GCNGC 2 cut(s) 135, 223
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 135, 223
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 2 cut(s) 204, 248
HapII CCGG 2 cut(s) 55, 201
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 264, 284
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 4 cut(s) 18, 299, 323, 380
HpaII CCGG 2 cut(s) 55, 201
Hpy188I TCNGA 4 cut(s) 7, 23, 161, 385
Hpy188III TCNNGA 2 cut(s) 118, 343
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 18, 218
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 341
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 2 cut(s) 264, 284
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 2 cut(s) 36, 349
LmnI GCTCC 2 cut(s) 93, 188
LpnPI CCDG 7 cut(s) 68, 75, 142, 214, 281, 366, 470
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 85, 196
MalI GATC 2 cut(s) 38, 351
MboI GATC 2 cut(s) 36, 349
MboII GAAGA 2 cut(s) 389, 419
MhlI GDGCHC 2 cut(s) 12, 185
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 300, 353
MnlI CCTC 1 cut(s) 215
Mph1103I ATGCAT 1 cut(s) 153
MseI TTAA 2 cut(s) 32, 366
MslI CAYNNNNRTG 2 cut(s) 285, 431
MspI CCGG 2 cut(s) 55, 201
MspR9I CCNGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 266, 341
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 36, 349
NlaIII CATG 2 cut(s) 264, 284
NlaIV GGNNCC 4 cut(s) 53, 95, 313, 438
NmuCI GTSAC 1 cut(s) 85
NruI TCGCGA 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 153
NspI RCATGY 2 cut(s) 264, 284
PaeI GCATGC 1 cut(s) 264
PfeI GAWTC 3 cut(s) 18, 323, 380
PflFI GACNNNGTC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 2 cut(s) 136, 224
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PspEI GGTNACC 1 cut(s) 196
PspN4I GGNNCC 4 cut(s) 53, 95, 313, 438
PspPI GGNCC 1 cut(s) 247
PsyI GACNNNGTC 1 cut(s) 124
RruI TCGCGA 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 285, 431
SaqAI TTAA 2 cut(s) 32, 366
SatI GCNGC 2 cut(s) 135, 223
Sau3AI GATC 2 cut(s) 36, 349
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 12, 185
SetI ASST 6 cut(s) 15, 53, 271, 478, 484, 500
SmiMI CAYNNNNRTG 2 cut(s) 285, 431
SphI GCATGC 1 cut(s) 264
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 135, 220
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 478
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 3 cut(s) 18, 323, 380
Tru1I TTAA 2 cut(s) 32, 366
Tru9I TTAA 2 cut(s) 32, 366
TscAI CASTG 3 cut(s) 136, 261, 300
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 52, 420, 438
TspRI CASTG 3 cut(s) 136, 261, 300
Tth111I GACNNNGTC 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 256
XceI RCATGY 2 cut(s) 264, 284
XspI CTAG 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.