Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Reverse (-)

6606791 .. 6607339

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCGGAAATCTTGACCGGAAAAGGTGACGAAGTTGGTCGGAAAAAGGTCGCCGGAGGTCACGGGAAAAATGGCCGAAAACTGGTGGCCAGAGCTAGGCAGGGCGGTGCGGGGGCTACTGCAGGGCTTGTGCAGGGGTGTTGCAGGGGCTGTGCAGGGGTTGTGCGGAGGATGTGCAGGGCCTGTCGGCAGCTGTTGCGCAGGGGCTCGGCAGATGTCGGCAGGTGTGTGCGGGGCTGTAGGCAGGTGCAGGCACATGTCTCGGCAAGTCTCAGCAGGGGCAGGCACAGGGGTGCGCAGGGCTGGGCAGATGTGCGCGGGGCTTCTCGGCAGATGTCGGTAGCACTCGGCAGGAAACGTGCAGGGCTCTCGGCAGATGCTTGCAGGGCTGTCGACAGAGGCTCGGCAGGGGCGTGCAGGGACCTCAGCAGGACTCCGCAGATGCTTGCAGGGGGCAGGGGCCAGGGGCCAGTTCGATTTTTCCGACGGCCGATTCAGGGGTTTTCTGGCCGGTTCCGGTGGTTCCGCCGCCGGTTCTGGGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.58

Weight (kDa)

11.95

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	213, 235
Acc16I	TGCGCA	2 cut(s)	200, 297
Acc36I	ACCTGC	2 cut(s)	213, 235
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	1 cut(s)	318
AciI	CCGC	8 cut(s)	105, 110, 166, 232, 318, 437, 526, 529
AcoI	YGGCCR	4 cut(s)	73, 87, 488, 508
AfiI	CCNNNNNNNGG	4 cut(s)	82, 96, 497, 538
AflIII	ACRYGT	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	462
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	95, 193
AluI	AGCT	2 cut(s)	95, 193
Alw26I	GTCTC	2 cut(s)	265, 275
AlwNI	CAGNNNCTG	2 cut(s)	150, 183
AoxI	GGCC	7 cut(s)	73, 87, 180, 460, 467, 488, 508
ApeKI	GCWGC	1 cut(s)	190
AspLEI	GCGC	3 cut(s)	201, 298, 318
AspS9I	GGNCC	4 cut(s)	180, 421, 460, 467
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	209, 369
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	503
BcgI	CGANNNNNNTGC	6 cut(s)	243, 277, 351, 373, 385, 407
BciT130I	CCWGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	265, 275
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	2 cut(s)	120, 238
BfuAI	ACCTGC	2 cut(s)	213, 235
BisI	GCNGC	2 cut(s)	191, 529
BlsI	GCNGC	2 cut(s)	192, 530
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	4 cut(s)	180, 421, 460, 467
BmiI	GGNNCC	6 cut(s)	422, 461, 468, 515, 524, 543
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	367, 432
Bpu10I	CCTNAGC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	2 cut(s)	17, 516
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 96, 497, 538
Bse118I	RCCGGY	2 cut(s)	510, 531
Bse1I	ACTGG	2 cut(s)	87, 470
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	82, 96, 497, 538
BseMII	CTCAG	2 cut(s)	286, 439
BseNI	ACTGG	2 cut(s)	87, 470
BseX3I	CGGCCG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	303
BsgI	GTGCAG	6 cut(s)	152, 174, 196, 269, 381, 436
Bsh1236I	CGCG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	7 cut(s)	75, 89, 182, 462, 469, 490, 510
BsiEI	CGRYCG	1 cut(s)	491
BsiSI	CCGG	6 cut(s)	5, 18, 54, 511, 517, 532
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	4 cut(s)	82, 96, 497, 538
BsmAI	GTCTC	2 cut(s)	265, 275
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	7 cut(s)	75, 89, 182, 462, 469, 490, 510
Bsp1286I	GDGCHC	2 cut(s)	209, 369
BspACI	CCGC	8 cut(s)	105, 110, 166, 232, 318, 437, 526, 529
BspANI	GGCC	7 cut(s)	75, 89, 182, 462, 469, 490, 510
BspCNI	CTCAG	2 cut(s)	285, 438
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	6 cut(s)	422, 461, 468, 515, 524, 543
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	2 cut(s)	213, 235
BsrFI	RCCGGY	2 cut(s)	510, 531
BsrI	ACTGG	2 cut(s)	87, 470
BssAI	RCCGGY	2 cut(s)	510, 531
BssECI	CCNNGG	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	5 cut(s)	252, 284, 382, 415, 447
BstDEI	CTNAG	2 cut(s)	272, 425
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	3 cut(s)	201, 298, 318
BstMAI	GTCTC	2 cut(s)	265, 275
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 386
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	2 cut(s)	120, 238
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	202
BstZI	CGGCCG	1 cut(s)	488
BsuRI	GGCC	7 cut(s)	75, 89, 182, 462, 469, 490, 510
BtsCI	GGATG	1 cut(s)	177
BveI	ACCTGC	2 cut(s)	213, 235
Cac8I	GCNNGC	5 cut(s)	252, 284, 382, 415, 447
CaiI	CAGNNNCTG	2 cut(s)	150, 183
CfoI	GCGC	3 cut(s)	201, 298, 318
Cfr10I	RCCGGY	2 cut(s)	510, 531
Cfr13I	GGNCC	4 cut(s)	180, 421, 460, 467
CviAII	CATG	1 cut(s)	257
DdeI	CTNAG	2 cut(s)	272, 425
EaeI	YGGCCR	4 cut(s)	73, 87, 488, 508
EagI	CGGCCG	1 cut(s)	488
EciI	GGCGGA	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	209, 369
Eco47I	GGWCC	1 cut(s)	421
Eco52I	CGGCCG	1 cut(s)	488
EcoO109I	RGGNCCY	2 cut(s)	180, 421
EcoRII	CCWGG	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	209, 369
FaeI	CATG	1 cut(s)	260
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	1 cut(s)	256
FauI	CCCGC	3 cut(s)	103, 225, 311
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	191, 529
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	2 cut(s)	209, 369
Fsp4HI	GCNGC	2 cut(s)	191, 529
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	2 cut(s)	200, 297
GlaI	GCGC	3 cut(s)	200, 297, 317
GluI	GCNGC	2 cut(s)	191, 529
GsaI	CCCAGC	1 cut(s)	307
HaeIII	GGCC	7 cut(s)	75, 89, 182, 462, 469, 490, 510
HapII	CCGG	6 cut(s)	5, 18, 54, 511, 517, 532
HhaI	GCGC	3 cut(s)	201, 298, 318
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	3 cut(s)	199, 296, 316
HinP1I	GCGC	3 cut(s)	199, 296, 316
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	433, 493
HpaII	CCGG	6 cut(s)	5, 18, 54, 511, 517, 532
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	42, 485
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 386
HpyF3I	CTNAG	2 cut(s)	272, 425
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	3 cut(s)	199, 296, 316
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	367, 432
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	26, 59
MhlI	GDGCHC	2 cut(s)	209, 369
MlsI	TGGCCA	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	20, 508
MnlI	CCTC	4 cut(s)	50, 162, 392, 434
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	6 cut(s)	5, 18, 54, 511, 517, 532
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	196, 386
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	6 cut(s)	422, 461, 468, 515, 524, 543
NmeAIII	GCCGAG	6 cut(s)	188, 242, 307, 327, 350, 383
NmuCI	GTSAC	2 cut(s)	26, 59
NsbI	TGCGCA	2 cut(s)	200, 297
NspI	RCATGY	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	291
PaqCI	CACCTGC	2 cut(s)	213, 235
PciI	ACATGT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	410, 481
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	192, 530
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	6 cut(s)	422, 461, 468, 515, 524, 543
PspPI	GGNCC	4 cut(s)	180, 421, 460, 467
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	2 cut(s)	150, 183
PvuII	CAGCTG	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	291
SalI	GTCGAC	1 cut(s)	392
SatI	GCNGC	2 cut(s)	191, 529
Sau96I	GGNCC	4 cut(s)	180, 421, 460, 467
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	209, 369
SetI	ASST	9 cut(s)	28, 51, 61, 97, 195, 227, 249, 361, 426
SfaNI	GCATC	2 cut(s)	367, 432
SfcI	CTRYAG	2 cut(s)	120, 238
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	291
SsiI	CCGC	8 cut(s)	105, 110, 166, 232, 318, 437, 526, 529
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	462
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	393, 475
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	26, 59
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	2 cut(s)	26, 59
VpaK11BI	GGWCC	1 cut(s)	421
XceI	RCATGY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.