Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Forward (+)

64287209 .. 64287721

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCTCGAAATTGGTGGCGGCGGTGGTGGCCGGAGGTAGGCCGGGCCGTGCGGGGGGTGCCGCAGGGGATATGCGGAGGCCGTGCGCAGCTATGTCGAGGCCCGTGCGGGGCTTGTGCGGGGGCTGTCGGGCAGATGTCACGGGGGGTCCGCAGGGCGGATCTCGGTGTCTCGGCAGCCTCTCTCGGTGCTTGCGGGGGTCGTCCGCAGGTCTCGGCAGCTCTCGACGTGTGCTTGCAGGGGCTTCGGCAGATGCGCGCAGCACTCGCAGGTCTCGGGAGGGGCTCGGCAACTACTCGGCAGACACTCGGCAGGGGTTCGGCAGGGGGCAGAGACCGGTCCGATTTTTCCGACGGCCGGTTAAGGGGTTTTCCAGCCGGTTCCGGTGGTTCCGCCGCCGGTTCGGGATCCTTGGGATTAGGGCTTCGATATGCGGGGCGGTGGTTGCAGGATTTTGGGGGCTACGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.48

Weight (kDa)

12.0

Isoelectric Point (pI)

67.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
Acc36I	ACCTGC	2 cut(s)	200, 261
AccB1I	GGYRCC	1 cut(s)	59
AccII	CGCG	1 cut(s)	259
AclWI	GGATC	3 cut(s)	169, 403, 416
AcoI	YGGCCR	2 cut(s)	30, 356
AfiI	CCNNNNNNNGG	6 cut(s)	39, 55, 110, 158, 358, 365
AflIII	ACRYGT	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	230
AluBI	AGCT	2 cut(s)	92, 222
AluI	AGCT	2 cut(s)	92, 222
Alw26I	GTCTC	4 cut(s)	176, 218, 279, 328
AlwI	GGATC	3 cut(s)	169, 403, 416
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	7 cut(s)	3, 30, 41, 46, 80, 101, 356
ApeKI	GCWGC	4 cut(s)	89, 177, 219, 261
AsiGI	ACCGGT	1 cut(s)	337
AspLEI	GCGC	3 cut(s)	89, 259, 261
AspS9I	GGNCC	4 cut(s)	46, 102, 149, 340
AsuC2I	CCSGG	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	149, 340
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	101, 189, 231, 273
BceAI	ACGGC	3 cut(s)	33, 67, 371
BcgI	CGANNNNNNTGC	6 cut(s)	78, 88, 112, 122, 228, 262
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	176, 218, 279, 328
BfuAI	ACCTGC	2 cut(s)	200, 261
BisI	GCNGC	7 cut(s)	21, 63, 90, 178, 220, 262, 397
BlsI	GCNGC	7 cut(s)	22, 64, 91, 179, 221, 263, 398
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	2 cut(s)	149, 340
BmeT110I	CYCGRG	1 cut(s)	276
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	46, 102, 149, 340
BmiI	GGNNCC	5 cut(s)	61, 150, 383, 392, 410
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	45
BsaI	GGTCTC	3 cut(s)	218, 279, 328
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	2 cut(s)	337, 384
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 55, 110, 158, 358, 365
Bse118I	RCCGGY	4 cut(s)	337, 358, 378, 399
BseDI	CCNNGG	1 cut(s)	412
BseLI	CCNNNNNNNGG	6 cut(s)	39, 55, 110, 158, 358, 365
BsePI	GCGCGC	1 cut(s)	257
BseX3I	CGGCCG	1 cut(s)	356
BseXI	GCAGC	4 cut(s)	101, 189, 231, 273
Bsh1236I	CGCG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	7 cut(s)	5, 32, 43, 48, 82, 103, 358
BshNI	GGYRCC	1 cut(s)	59
BshTI	ACCGGT	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	7 cut(s)	33, 44, 338, 359, 379, 385, 400
BslI	CCNNNNNNNGG	6 cut(s)	39, 55, 110, 158, 358, 365
BsmAI	GTCTC	4 cut(s)	176, 218, 279, 328
BsnI	GGCC	7 cut(s)	5, 32, 43, 48, 82, 103, 358
Bso31I	GGTCTC	3 cut(s)	218, 279, 328
BsoBI	CYCGRG	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	161, 408
BspANI	GGCC	7 cut(s)	5, 32, 43, 48, 82, 103, 358
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	5 cut(s)	61, 150, 383, 392, 410
BspMI	ACCTGC	2 cut(s)	200, 261
BspPI	GGATC	3 cut(s)	169, 403, 416
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	3 cut(s)	218, 279, 328
BsrFI	RCCGGY	4 cut(s)	337, 358, 378, 399
BssAI	RCCGGY	4 cut(s)	337, 358, 378, 399
BssECI	CCNNGG	1 cut(s)	412
BssHII	GCGCGC	1 cut(s)	257
BssMI	GATC	2 cut(s)	161, 408
BssT1I	CCWWGG	1 cut(s)	412
BstC8I	GCNNGC	3 cut(s)	194, 237, 259
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	3 cut(s)	89, 259, 261
BstKTI	GATC	2 cut(s)	164, 411
BstMAI	GTCTC	4 cut(s)	176, 218, 279, 328
BstMBI	GATC	2 cut(s)	161, 408
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 59, 267, 446
BstSCI	CCNGG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	4 cut(s)	101, 189, 231, 273
BstX2I	RGATCY	2 cut(s)	161, 408
BstYI	RGATCY	2 cut(s)	161, 408
BstZI	CGGCCG	1 cut(s)	356
BsuRI	GGCC	7 cut(s)	5, 32, 43, 48, 82, 103, 358
BtrI	CACGTC	1 cut(s)	230
BveI	ACCTGC	2 cut(s)	200, 261
Cac8I	GCNNGC	3 cut(s)	194, 237, 259
CfoI	GCGC	3 cut(s)	89, 259, 261
Cfr10I	RCCGGY	4 cut(s)	337, 358, 378, 399
Cfr13I	GGNCC	4 cut(s)	46, 102, 149, 340
CpoI	CGGWCCG	1 cut(s)	340
CspAI	ACCGGT	1 cut(s)	337
CspI	CGGWCCG	1 cut(s)	340
DpnI	GATC	2 cut(s)	163, 410
DpnII	GATC	2 cut(s)	161, 408
EaeI	YGGCCR	2 cut(s)	30, 356
EagI	CGGCCG	1 cut(s)	356
EciI	GGCGGA	2 cut(s)	174, 383
EclXI	CGGCCG	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	3 cut(s)	218, 279, 328
Eco47I	GGWCC	2 cut(s)	149, 340
Eco52I	CGGCCG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	412
FaiI	YATR	3 cut(s)	74, 95, 433
FauI	CCCGC	5 cut(s)	46, 102, 113, 189, 428
Fnu4HI	GCNGC	7 cut(s)	21, 63, 90, 178, 220, 262, 397
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	7 cut(s)	21, 63, 90, 178, 220, 262, 397
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	3 cut(s)	88, 258, 260
GluI	GCNGC	7 cut(s)	21, 63, 90, 178, 220, 262, 397
HaeIII	GGCC	7 cut(s)	5, 32, 43, 48, 82, 103, 358
HapII	CCGG	7 cut(s)	33, 44, 338, 359, 379, 385, 400
HhaI	GCGC	3 cut(s)	89, 259, 261
Hin6I	GCGC	3 cut(s)	87, 257, 259
HinP1I	GCGC	3 cut(s)	87, 257, 259
HpaII	CCGG	7 cut(s)	33, 44, 338, 359, 379, 385, 400
Hpy188I	TCNGA	2 cut(s)	344, 353
Hpy188III	TCNNGA	3 cut(s)	225, 278, 406
Hpy99I	CGWCG	2 cut(s)	231, 357
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	239, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 59, 267, 446
HpySE526I	ACGT	1 cut(s)	229
HspAI	GCGC	3 cut(s)	87, 257, 259
Kzo9I	GATC	2 cut(s)	161, 408
Lsp1109I	GCAGC	4 cut(s)	101, 189, 231, 273
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	163, 410
MboI	GATC	2 cut(s)	161, 408
MflI	RGATCY	2 cut(s)	161, 408
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	11, 469
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	6 cut(s)	16, 29, 72, 93, 191, 274
MseI	TTAA	1 cut(s)	363
MspI	CCGG	7 cut(s)	33, 44, 338, 359, 379, 385, 400
MspR9I	CCNGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	4 cut(s)	29, 59, 267, 446
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	161, 408
NlaIV	GGNNCC	5 cut(s)	61, 150, 383, 392, 410
NmeAIII	GCCGAG	5 cut(s)	153, 195, 267, 278, 289
NmuCI	GTSAC	1 cut(s)	139
NsbI	TGCGCA	1 cut(s)	88
PauI	GCGCGC	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	7 cut(s)	22, 64, 91, 179, 221, 263, 398
PspN4I	GGNNCC	5 cut(s)	61, 150, 383, 392, 410
PspPI	GGNCC	4 cut(s)	46, 102, 149, 340
PsuI	RGATCY	2 cut(s)	161, 408
PteI	GCGCGC	1 cut(s)	257
Rsr2I	CGGWCCG	1 cut(s)	340
RsrII	CGGWCCG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	7 cut(s)	21, 63, 90, 178, 220, 262, 397
Sau3AI	GATC	2 cut(s)	161, 408
Sau96I	GGNCC	4 cut(s)	46, 102, 149, 340
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	40, 94, 214, 224, 232, 275
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	2 cut(s)	149, 340
Sse9I	AATT	2 cut(s)	11, 469
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	4 cut(s)	8, 98, 226, 428
TasI	AATT	2 cut(s)	11, 469
TauI	GCSGC	3 cut(s)	23, 65, 399
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	89, 177, 219, 261
Tsp45I	GTSAC	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	149, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.