Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000594.1

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Reverse (-)

298455 .. 300096

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000594.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgcgaaccgggcagggattgtttttatcttctggaggccggttcggtacttttctggccggttccggtgacgccgccggcggttttgggctcctgggattgagagcttcaaggtgggggtcggtggttgctgggttatgctccataactttggttaccggcctcctcctcttactccgcagcgcaactaaaataacacacaaggcccaagcagtggcatgcctagctaccaagtggcatgtttgtgccacactggagtcgtttgatggaaccgagttggattctccaacggctcaaattgcgaatgatccagcattttattttaacaccgacgaagaatcagacggggatttggttagtgatgaagataatgacttggaaaacaccaagatggtgccatcttgttcatctcataccatttcttaccaaaaacgtcaagctctgggtaagcccacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

152

Amino Acids

16.0

Weight (kDa)

5.24

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AccB7I	CCANNNNNTGG	1 cut(s)	214
AciI	CCGC	3 cut(s)	75, 81, 178
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	107, 227, 440
AluI	AGCT	3 cut(s)	107, 227, 440
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	4 cut(s)	37, 57, 160, 204
ApeKI	GCWGC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	3 cut(s)	260, 385, 406
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	2 cut(s)	75, 181
BlsI	GCNGC	2 cut(s)	76, 182
Bme1390I	CCNGG	2 cut(s)	10, 95
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	4 cut(s)	64, 92, 271, 396
BmrFI	CCNGG	2 cut(s)	10, 95
BpmI	CTGGAG	2 cut(s)	54, 275
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	4 cut(s)	39, 59, 77, 158
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	155, 158
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	4 cut(s)	39, 59, 162, 206
BshNI	GGYRCC	1 cut(s)	394
BsiSI	CCGG	6 cut(s)	9, 40, 60, 66, 78, 159
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	4 cut(s)	39, 59, 162, 206
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	3 cut(s)	75, 81, 178
BspANI	GGCC	4 cut(s)	39, 59, 162, 206
BspLI	GGNNCC	4 cut(s)	64, 92, 271, 396
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	394
BsrFI	RCCGGY	4 cut(s)	39, 59, 77, 158
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	4 cut(s)	39, 59, 77, 158
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	307
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	79, 220
BstEII	GGTNACC	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 224, 299
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	222, 242
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	8, 93
BstV1I	GCAGC	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	39, 59, 162, 206
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 251
Cac8I	GCNNGC	2 cut(s)	79, 220
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	4 cut(s)	39, 59, 77, 158
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	2 cut(s)	219, 239
CviQI	GTAC	1 cut(s)	48
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	2 cut(s)	222, 242
FaiI	YATR	5 cut(s)	139, 146, 220, 240, 414
FatI	CATG	2 cut(s)	218, 238
Fnu4HI	GCNGC	2 cut(s)	75, 181
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	75, 181
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	75, 181
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	54, 275
HaeIII	GGCC	4 cut(s)	39, 59, 162, 206
HapII	CCGG	6 cut(s)	9, 40, 60, 66, 78, 159
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	222, 242
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	257, 281, 338
HpaII	CCGG	6 cut(s)	9, 40, 60, 66, 78, 159
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 224, 299
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	222, 242
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	96, 146
Lsp1109I	GCAGC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	68, 154
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	21, 347, 377
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	258, 311
MnlI	CCTC	4 cut(s)	29, 173, 176, 179
MreI	CGCCGGCG	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	77
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	243, 389
MspI	CCGG	6 cut(s)	9, 40, 60, 66, 78, 159
MspR9I	CCNGG	2 cut(s)	10, 95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	10, 224, 299
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	307
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	222, 242
NlaIV	GGNNCC	4 cut(s)	64, 92, 271, 396
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	2 cut(s)	222, 242
PaeI	GCATGC	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	281, 338
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	76, 182
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	4 cut(s)	64, 92, 271, 396
PspPI	GGNCC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	243, 389
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	75, 181
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	10, 95
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	6 cut(s)	109, 116, 229, 436, 442, 458
SgrAI	CRCCGGYG	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	243, 389
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	75, 81, 178
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	8, 93
TaiI	ACGT	1 cut(s)	436
TasI	AATT	1 cut(s)	297
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	281, 338
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	219, 258
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	378, 396
TspRI	CASTG	2 cut(s)	219, 258
Van91I	CCANNNNNTGG	1 cut(s)	214
XceI	RCATGY	2 cut(s)	222, 242
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.