Rh1AG292100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011566
Physical Location & Seq
Reverse (-)
52196200 .. 52198954
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG292100.1

Sequence Viewer

Length: 231 bp
ATGTCGATAGGGGCTGTGCAGGTGCATGCGGGGACTGTCGGCAGCGGTTGGCAGTTCTCGGCAGGGGCGTGCAGGGACCTCAGCAGGACTAGGCAGATGTTTGCAGGGGGCAGAGGCCGGTCCGATTTTTCCGACGGCCGGTTCAAGGGTTTTCCGACCGGTTCCGGTGGTTCCGCCGCCGGTTCTGGGTTCCTTGAAGCTAGGGCTTCAATATGTAATGAAAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.77

Weight (kDa)

10.07

Isoelectric Point (pI)

25.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 10
AciI CCGC 4 cut(s) 29, 45, 174, 177
AcoI YGGCCR 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 138, 145, 186
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 3 cut(s) 145, 197, 210
AluBI AGCT 2 cut(s) 200, 226
AluI AGCT 2 cut(s) 200, 226
AoxI GGCC 2 cut(s) 115, 136
ApeKI GCWGC 1 cut(s) 42
AsiGI ACCGGT 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 76, 120
AvaII GGWCC 2 cut(s) 76, 120
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 151
BfaI CTAG 2 cut(s) 90, 201
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 43, 177
BlsI GCNGC 2 cut(s) 44, 178
Bme18I GGWCC 2 cut(s) 76, 120
BmgT120I GGNCC 2 cut(s) 76, 120
BmiI GGNNCC 4 cut(s) 77, 163, 172, 191
Bpu10I CCTNAGC 1 cut(s) 80
BsaWI WCCGGW 2 cut(s) 158, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 145, 186
Bse118I RCCGGY 4 cut(s) 117, 138, 158, 179
BseLI CCNNNNNNNGG 3 cut(s) 138, 145, 186
BseMII CTCAG 1 cut(s) 94
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 54
BsgI GTGCAG 2 cut(s) 38, 91
Bsh1285I CGRYCG 2 cut(s) 139, 159
BshFI GGCC 2 cut(s) 117, 138
BshTI ACCGGT 1 cut(s) 158
BsiEI CGRYCG 2 cut(s) 139, 159
BsiSI CCGG 5 cut(s) 118, 139, 159, 165, 180
BslFI GGGAC 2 cut(s) 46, 89
BslI CCNNNNNNNGG 3 cut(s) 138, 145, 186
BsmFI GGGAC 2 cut(s) 46, 89
BsnI GGCC 2 cut(s) 117, 138
BspACI CCGC 4 cut(s) 29, 45, 174, 177
BspANI GGCC 2 cut(s) 117, 138
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 4 cut(s) 77, 163, 172, 191
BspMI ACCTGC 1 cut(s) 10
BsrFI RCCGGY 4 cut(s) 117, 138, 158, 179
BssAI RCCGGY 4 cut(s) 117, 138, 158, 179
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 27, 70
BstDEI CTNAG 1 cut(s) 80
BstMCI CGRYCG 2 cut(s) 139, 159
BstNSI RCATGY 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 2 cut(s) 117, 138
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 27, 70
Cfr10I RCCGGY 4 cut(s) 117, 138, 158, 179
Cfr13I GGNCC 2 cut(s) 76, 120
CpoI CGGWCCG 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 158
CspI CGGWCCG 1 cut(s) 120
CviAII CATG 1 cut(s) 26
CviJI RGCY 6 cut(s) 14, 117, 138, 200, 206, 226
CviKI_1 RGCY 6 cut(s) 14, 117, 138, 200, 206, 226
DdeI CTNAG 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
EciI GGCGGA 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 76, 120
Eco52I CGGCCG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 76
FaeI CATG 1 cut(s) 29
FaiI YATR 2 cut(s) 27, 214
FaqI GGGAC 2 cut(s) 46, 89
FatI CATG 1 cut(s) 25
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 43, 177
Fsp4HI GCNGC 2 cut(s) 43, 177
FspBI CTAG 2 cut(s) 90, 201
GluI GCNGC 2 cut(s) 43, 177
HaeIII GGCC 2 cut(s) 117, 138
HapII CCGG 5 cut(s) 118, 139, 159, 165, 180
Hin1II CATG 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 224
HpaII CCGG 5 cut(s) 118, 139, 159, 165, 180
Hpy188I TCNGA 3 cut(s) 124, 133, 156
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 19, 25, 72, 104
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 1 cut(s) 29
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 2 cut(s) 90, 201
MmeI TCCRAC 2 cut(s) 156, 179
MnlI CCTC 2 cut(s) 89, 107
MseI TTAA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 5 cut(s) 118, 139, 159, 165, 180
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 4 cut(s) 77, 163, 172, 191
NmeAIII GCCGAG 1 cut(s) 38
NspI RCATGY 1 cut(s) 29
PaeI GCATGC 1 cut(s) 29
PaqCI CACCTGC 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 2 cut(s) 44, 178
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
PspN4I GGNNCC 4 cut(s) 77, 163, 172, 191
PspPI GGNCC 2 cut(s) 76, 120
PspPPI RGGWCCY 1 cut(s) 76
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 2 cut(s) 43, 177
Sau96I GGNCC 2 cut(s) 76, 120
SetI ASST 4 cut(s) 24, 81, 202, 228
SinI GGWCC 2 cut(s) 76, 120
SphI GCATGC 1 cut(s) 29
SsiI CCGC 4 cut(s) 29, 45, 174, 177
SspMI CTAG 2 cut(s) 90, 201
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 5
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TseI GCWGC 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 76, 120
XceI RCATGY 1 cut(s) 29
XspI CTAG 2 cut(s) 90, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.