Rh3DG005700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011566
Physical Location & Seq
Reverse (-)
403135 .. 403434
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG005700.1

Sequence Viewer

Length: 300 bp
ATGGCCGAAAAAAGGTTCCCGGAGGTCGTCGGAAACTGGTGGTCGGCGGCTGGGCTGCTGCAGGTGCTGTACAGGGATGTGCAGAGGCCGTGCGGAGGCTGTGCAGGGCTGGCAGGCAGATGCTCGGCAGGGGCTAGGCAGCTGTCGGCAGATGCAGGCACAGGGGTGCGCAAGGCTCTTGGCAGGACTCGACATGAGGCTTGCAGGGGCTGTCGGCAGGTGCAGGCACAGGGCTCGACAGATCTCGGCAAGTACTCGGGAGGGCTTGCAAGGGGCAGGCACAGGGCAGGCTCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.46

Weight (kDa)

10.78

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 52, 208
Acc16I TGCGCA 1 cut(s) 170
Acc36I ACCTGC 2 cut(s) 52, 208
AciI CCGC 2 cut(s) 47, 93
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 71, 254
AfiI CCNNNNNNNGG 2 cut(s) 12, 95
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AlwNI CAGNNNCTG 2 cut(s) 67, 210
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 2 cut(s) 3, 86
ApeKI GCWGC 3 cut(s) 55, 58, 139
AspLEI GCGC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 256
BanII GRGCYC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 42, 45, 151
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BcnI CCSGG 1 cut(s) 20
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 59
BfuAI ACCTGC 2 cut(s) 52, 208
BglII AGATCT 1 cut(s) 241
BisI GCNGC 4 cut(s) 48, 56, 59, 140
BlsI GCNGC 4 cut(s) 49, 57, 60, 141
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 110, 142
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 95
Bse1I ACTGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 12, 95
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 42, 45, 151
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 3 cut(s) 101, 123, 242
BshFI GGCC 2 cut(s) 5, 88
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 12, 95
BsnI GGCC 2 cut(s) 5, 88
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 2 cut(s) 47, 93
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 63
BspMI ACCTGC 2 cut(s) 52, 208
BsrGI TGTACA 1 cut(s) 69
BsrI ACTGG 1 cut(s) 41
BssMI GATC 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 69
BstC8I GCNNGC 8 cut(s) 111, 115, 157, 202, 225, 267, 278, 289
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 64, 110
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 42, 45, 151
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 2 cut(s) 5, 88
BtsCI GGATG 1 cut(s) 82
BveI ACCTGC 2 cut(s) 52, 208
Cac8I GCNNGC 8 cut(s) 111, 115, 157, 202, 225, 267, 278, 289
CaiI CAGNNNCTG 2 cut(s) 67, 210
CfoI GCGC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 70, 253
CviAII CATG 1 cut(s) 194
CviQI GTAC 2 cut(s) 70, 253
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 1 cut(s) 197
FaiI YATR 1 cut(s) 195
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 48, 56, 59, 140
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 4 cut(s) 48, 56, 59, 140
FspBI CTAG 1 cut(s) 135
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 1 cut(s) 170
GluI GCNGC 4 cut(s) 48, 56, 59, 140
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 1 cut(s) 20
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 258
Hpy99I CGWCG 1 cut(s) 32
HpyCH4V TGCA 7 cut(s) 61, 82, 104, 155, 204, 223, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 110
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 241
Lsp1109I GCAGC 3 cut(s) 42, 45, 151
LweI GCATC 2 cut(s) 110, 142
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 236
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 5 cut(s) 16, 78, 89, 190, 254
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 64, 110
NciI CCSGG 1 cut(s) 20
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 17
NmeAIII GCCGAG 2 cut(s) 104, 225
NsbI TGCGCA 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 164
PaqCI CACCTGC 2 cut(s) 52, 208
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 4 cut(s) 49, 57, 60, 141
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 63
PstNI CAGNNNCTG 2 cut(s) 67, 210
PsuI RGATCY 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 2 cut(s) 71, 254
RsaNI GTAC 2 cut(s) 70, 253
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 4 cut(s) 48, 56, 59, 140
Sau3AI GATC 1 cut(s) 241
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 236
SetI ASST 6 cut(s) 17, 27, 66, 144, 222, 299
SfaNI GCATC 2 cut(s) 110, 142
SfcI CTRYAG 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SsiI CCGC 2 cut(s) 47, 93
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 2 cut(s) 190, 236
TatI WGTACW 2 cut(s) 69, 252
TauI GCSGC 1 cut(s) 50
TseI GCWGC 3 cut(s) 55, 58, 139
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.