Rh1BG100900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011566
Physical Location & Seq
Reverse (-)
17578552 .. 17591718
13167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG100900.1

Sequence Viewer

Length: 330 bp
ATGCCGGAATTCTTGACTGGAAAAGAAGATGGAGGTGGCCGGAAAAAGGTTGCCGGAGGTCACCTGAAACTAGTGGCCGGAGCTAGGCAGGGTTGCTGCAGGGGCTGTGCAGGAGGTGTGCGGAGGCTGCGCAGGGGCTGTGCAGGGTTGGCAGGCAGATGCTCGGCAGGTGCTAGGCAGCTGTCGGCAGATGCAGGGGTGCGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGCAGGGGCTATGCGGAGCTTTCGGCAGATGTCGACAGGGGCAGGCACAGGGGTGCGCAGGGTTCGGCAGTTCAAAGCCTTTTGTGCATCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.22

Weight (kDa)

11.02

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 158, 205, 216
Acc16I TGCGCA 3 cut(s) 131, 203, 289
Acc36I ACCTGC 4 cut(s) 158, 195, 205, 216
AccI GTMKAC 1 cut(s) 265
AciI CCGC 2 cut(s) 121, 246
AcoI YGGCCR 2 cut(s) 37, 75
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 46, 84
AgsI TTSAA 1 cut(s) 306
AhlI ACTAGT 1 cut(s) 70
AleI CACNNNNGTG 1 cut(s) 283
AluBI AGCT 3 cut(s) 83, 181, 251
AluI AGCT 3 cut(s) 83, 181, 251
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 213
AlwNI CAGNNNCTG 2 cut(s) 105, 138
AoxI GGCC 2 cut(s) 37, 75
ApeKI GCWGC 3 cut(s) 96, 127, 178
ApoI RAATTY 1 cut(s) 8
AspLEI GCGC 3 cut(s) 132, 204, 290
AsuHPI GGTGA 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 83, 114, 190
BccI CCATC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 213
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 3 cut(s) 71, 84, 174
BfmI CTRYAG 1 cut(s) 97
BfuAI ACCTGC 4 cut(s) 158, 195, 205, 216
BisI GCNGC 3 cut(s) 97, 128, 179
BlsI GCNGC 3 cut(s) 98, 129, 180
BmsI GCATC 2 cut(s) 149, 181
BsaI GGTCTC 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 84
Bse1I ACTGG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 46, 84
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 83, 114, 190
BsgI GTGCAG 2 cut(s) 129, 162
BshFI GGCC 2 cut(s) 39, 77
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 4 cut(s) 5, 40, 54, 78
BslI CCNNNNNNNGG 2 cut(s) 46, 84
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 2 cut(s) 39, 77
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 222
BspACI CCGC 2 cut(s) 121, 246
BspANI GGCC 2 cut(s) 39, 77
BspMAI CTGCAG 1 cut(s) 101
BspMI ACCTGC 4 cut(s) 158, 195, 205, 216
BspTNI GGTCTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 154, 276
BstEII GGTNACC 1 cut(s) 59
BstHHI GCGC 3 cut(s) 132, 204, 290
BstMAI GTCTC 1 cut(s) 213
BstMWI GCNNNNNNNGC 4 cut(s) 102, 127, 149, 316
BstPI GGTNACC 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 3 cut(s) 83, 114, 190
BsuRI GGCC 2 cut(s) 39, 77
BveI ACCTGC 4 cut(s) 158, 195, 205, 216
Cac8I GCNNGC 2 cut(s) 154, 276
CaiI CAGNNNCTG 2 cut(s) 105, 138
CfoI GCGC 3 cut(s) 132, 204, 290
EaeI YGGCCR 2 cut(s) 37, 75
Eco31I GGTCTC 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 8
FaiI YATR 1 cut(s) 244
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 97, 128, 179
Fsp4HI GCNGC 3 cut(s) 97, 128, 179
FspBI CTAG 3 cut(s) 71, 84, 174
FspI TGCGCA 3 cut(s) 131, 203, 289
GlaI GCGC 3 cut(s) 131, 203, 289
GluI GCNGC 3 cut(s) 97, 128, 179
HaeIII GGCC 2 cut(s) 39, 77
HapII CCGG 4 cut(s) 5, 40, 54, 78
HhaI GCGC 3 cut(s) 132, 204, 290
Hin6I GCGC 3 cut(s) 130, 202, 288
HinP1I GCGC 3 cut(s) 130, 202, 288
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HpaII CCGG 4 cut(s) 5, 40, 54, 78
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 266
Hpy188III TCNNGA 2 cut(s) 13, 323
Hpy8I GTNNAC 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 99, 110, 143, 194, 319
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 127, 149, 316
HspAI GCGC 3 cut(s) 130, 202, 288
LmnI GCTCC 2 cut(s) 80, 248
Lsp1109I GCAGC 3 cut(s) 83, 114, 190
LweI GCATC 2 cut(s) 149, 181
MaeI CTAG 3 cut(s) 71, 84, 174
MaeIII GTNAC 1 cut(s) 59
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 1 cut(s) 8
MnlI CCTC 4 cut(s) 26, 50, 107, 117
MseI TTAA 1 cut(s) 328
MslI CAYNNNNRTG 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 4 cut(s) 5, 40, 54, 78
MwoI GCNNNNNNNGC 4 cut(s) 102, 127, 149, 316
NmeAIII GCCGAG 3 cut(s) 143, 190, 201
NmuCI GTSAC 1 cut(s) 59
NsbI TGCGCA 3 cut(s) 131, 203, 289
OliI CACNNNNGTG 1 cut(s) 283
PaqCI CACCTGC 3 cut(s) 158, 205, 216
PkrI GCNGC 3 cut(s) 98, 129, 180
PspEI GGTNACC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 101
PstNI CAGNNNCTG 2 cut(s) 105, 138
PvuII CAGCTG 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 283
SalI GTCGAC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 328
SatI GCNGC 3 cut(s) 97, 128, 179
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 2 cut(s) 149, 181
SfcI CTRYAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 283
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 1 cut(s) 8
SsiI CCGC 2 cut(s) 121, 246
SspMI CTAG 3 cut(s) 71, 84, 174
TaqI TCGA 1 cut(s) 265
TasI AATT 1 cut(s) 8
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 96, 127, 178
Tsp45I GTSAC 1 cut(s) 59
XapI RAATTY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 3 cut(s) 71, 84, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.