Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001155.1

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Reverse (-)

117307 .. 118059

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001155.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggccagaaaaaggtcgccggaaaagtggccggagctaggcaagttggtgcagggcagttgcggaggcgtgcaggcctgctacagggctcgtgcagggctgttgcagggcttgtgcaggggctgtgcggagggtgtgcagggcctgtcggcaggtgctgcgcaggggctcggcagatgtcggcaggtgtgtgcggggctgtcggcagctgtcggcaggtgtgtgcgaggctgtcagcaggggcaggcactcgtctctgcaggtatcggtaggtctcggcagatgcaggcacaaggctcggcaggggcaggcactnnnnnnnnnnnncgaggctgtcggcaggggcaggcactcgtctctgcaggtctcggcagatgcaggcacaaggttcggcagaggcaggcactcgtctcggcagatgcaggcacaaggctcggcaggggcaggcactcgtctcggcagatgcaggcacaaggctcggcaggggcaggcacttgtctcggcagctctcggcaactgctcggcaaggctcgcaggggcaggcacaaggcaggcacaagactcggtaggtctcagcagctctcgacagctgctcggcaaagctcgcaagggcaggcacaaggcaagggccggtccgatttttccgatggccagttcaggggttttccggccgattccggtggttctgccgccggttctgggctccttgggaatagggcttcgatatgtggggcgatggtttctggattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

25.0

Weight (kDa)

11.69

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	143, 175, 207
Acc16I	TGCGCA	1 cut(s)	162
Acc36I	ACCTGC	5 cut(s)	143, 175, 207, 251, 353
AciI	CCGC	4 cut(s)	63, 128, 194, 690
AcoI	YGGCCR	4 cut(s)	3, 29, 649, 669
AfiI	CCNNNNNNNGG	5 cut(s)	12, 38, 84, 658, 699
AluBI	AGCT	6 cut(s)	37, 209, 507, 580, 590, 603
AluI	AGCT	6 cut(s)	37, 209, 507, 580, 590, 603
Alw26I	GTCTC	8 cut(s)	259, 279, 361, 371, 415, 459, 503, 576
AlwNI	CAGNNNCTG	3 cut(s)	123, 145, 158
AoxI	GGCC	7 cut(s)	3, 29, 75, 142, 628, 649, 669
ApeKI	GCWGC	5 cut(s)	158, 206, 504, 577, 590
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	3 cut(s)	142, 628, 633
AvaII	GGWCC	1 cut(s)	633
BalI	TGGCCA	2 cut(s)	5, 651
BanII	GRGCYC	3 cut(s)	91, 171, 705
BauI	CACGAG	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	145, 218, 516, 577, 589
BccI	CCATC	2 cut(s)	641, 730
BcoDI	GTCTC	8 cut(s)	259, 279, 361, 371, 415, 459, 503, 576
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	3 cut(s)	82, 258, 360
BfuAI	ACCTGC	5 cut(s)	143, 175, 207, 251, 353
BisI	GCNGC	6 cut(s)	159, 207, 505, 578, 591, 690
BlsI	GCNGC	6 cut(s)	160, 208, 506, 579, 592, 691
Bme18I	GGWCC	1 cut(s)	633
BmgT120I	GGNCC	3 cut(s)	142, 628, 633
BmiI	GGNNCC	1 cut(s)	704
BmsI	GCATC	4 cut(s)	273, 365, 409, 453
BsaI	GGTCTC	3 cut(s)	279, 371, 576
BsaJI	CCNNGG	1 cut(s)	706
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 38, 84, 658, 699
Bse118I	RCCGGY	2 cut(s)	630, 692
Bse1I	ACTGG	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	706
BseLI	CCNNNNNNNGG	5 cut(s)	12, 38, 84, 658, 699
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	1 cut(s)	652
BseX3I	CGGCCG	1 cut(s)	669
BseXI	GCAGC	5 cut(s)	145, 218, 516, 577, 589
BsgI	GTGCAG	5 cut(s)	71, 92, 114, 136, 158
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	7 cut(s)	5, 31, 77, 144, 630, 651, 671
BsiEI	CGRYCG	1 cut(s)	672
BsiSI	CCGG	6 cut(s)	20, 32, 631, 668, 678, 693
BslI	CCNNNNNNNGG	5 cut(s)	12, 38, 84, 658, 699
BsmAI	GTCTC	8 cut(s)	259, 279, 361, 371, 415, 459, 503, 576
BsmBI	CGTCTC	4 cut(s)	259, 361, 415, 459
BsnI	GGCC	7 cut(s)	5, 31, 77, 144, 630, 651, 671
Bso31I	GGTCTC	3 cut(s)	279, 371, 576
Bsp1286I	GDGCHC	3 cut(s)	91, 171, 705
BspACI	CCGC	4 cut(s)	63, 128, 194, 690
BspANI	GGCC	7 cut(s)	5, 31, 77, 144, 630, 651, 671
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	704
BspMAI	CTGCAG	2 cut(s)	262, 364
BspMI	ACCTGC	5 cut(s)	143, 175, 207, 251, 353
BspTNI	GGTCTC	3 cut(s)	279, 371, 576
BsrFI	RCCGGY	2 cut(s)	630, 692
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	2 cut(s)	630, 692
BssECI	CCNNGG	1 cut(s)	706
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	573
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	163
BstMAI	GTCTC	8 cut(s)	259, 279, 361, 371, 415, 459, 503, 576
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 531, 604
BstSFI	CTRYAG	3 cut(s)	82, 258, 360
BstV1I	GCAGC	5 cut(s)	145, 218, 516, 577, 589
BstZI	CGGCCG	1 cut(s)	669
BsuRI	GGCC	7 cut(s)	5, 31, 77, 144, 630, 651, 671
BtgZI	GCGATG	1 cut(s)	749
BveI	ACCTGC	5 cut(s)	143, 175, 207, 251, 353
CaiI	CAGNNNCTG	3 cut(s)	123, 145, 158
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	630, 692
Cfr13I	GGNCC	3 cut(s)	142, 628, 633
CpoI	CGGWCCG	1 cut(s)	633
CspI	CGGWCCG	1 cut(s)	633
DdeI	CTNAG	1 cut(s)	573
EaeI	YGGCCR	4 cut(s)	3, 29, 649, 669
EagI	CGGCCG	1 cut(s)	669
EclXI	CGGCCG	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	706
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	3 cut(s)	91, 171, 705
Eco31I	GGTCTC	3 cut(s)	279, 371, 576
Eco47I	GGWCC	1 cut(s)	633
Eco52I	CGGCCG	1 cut(s)	669
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	706
EcoT38I	GRGCYC	3 cut(s)	91, 171, 705
ErhI	CCWWGG	1 cut(s)	706
Esp3I	CGTCTC	4 cut(s)	259, 361, 415, 459
FaiI	YATR	1 cut(s)	727
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	6 cut(s)	159, 207, 505, 578, 591, 690
FriOI	GRGCYC	3 cut(s)	91, 171, 705
Fsp4HI	GCNGC	6 cut(s)	159, 207, 505, 578, 591, 690
FspBI	CTAG	1 cut(s)	38
FspI	TGCGCA	1 cut(s)	162
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	6 cut(s)	159, 207, 505, 578, 591, 690
HaeIII	GGCC	7 cut(s)	5, 31, 77, 144, 630, 651, 671
HapII	CCGG	6 cut(s)	20, 32, 631, 668, 678, 693
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	561, 674
HpaII	CCGG	6 cut(s)	20, 32, 631, 668, 678, 693
Hpy188I	TCNGA	2 cut(s)	637, 646
Hpy188III	TCNNGA	2 cut(s)	583, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 531, 604
HpyF3I	CTNAG	1 cut(s)	573
HspAI	GCGC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	34, 708
Lsp1109I	GCAGC	5 cut(s)	145, 218, 516, 577, 589
LweI	GCATC	4 cut(s)	273, 365, 409, 453
MaeI	CTAG	1 cut(s)	38
MhlI	GDGCHC	3 cut(s)	91, 171, 705
MlsI	TGGCCA	2 cut(s)	5, 651
MluNI	TGGCCA	2 cut(s)	5, 651
MlyI	GAGTC	1 cut(s)	555
MnlI	CCTC	5 cut(s)	59, 124, 221, 323, 390
Mox20I	TGGCCA	2 cut(s)	5, 651
MscI	TGGCCA	2 cut(s)	5, 651
Msp20I	TGGCCA	2 cut(s)	5, 651
MspA1I	CMGCKG	2 cut(s)	209, 590
MspI	CCGG	6 cut(s)	20, 32, 631, 668, 678, 693
MwoI	GCNNNNNNNGC	3 cut(s)	158, 531, 604
NlaIV	GGNNCC	1 cut(s)	704
NsbI	TGCGCA	1 cut(s)	162
PaqCI	CACCTGC	3 cut(s)	143, 175, 207
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	674
PkrI	GCNGC	6 cut(s)	160, 208, 506, 579, 592, 691
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	3 cut(s)	142, 628, 633
PstI	CTGCAG	2 cut(s)	262, 364
PstNI	CAGNNNCTG	3 cut(s)	123, 145, 158
PvuII	CAGCTG	2 cut(s)	209, 590
Rsr2I	CGGWCCG	1 cut(s)	633
RsrII	CGGWCCG	1 cut(s)	633
SatI	GCNGC	6 cut(s)	159, 207, 505, 578, 591, 690
Sau96I	GGNCC	3 cut(s)	142, 628, 633
SchI	GAGTC	1 cut(s)	555
SduI	GDGCHC	3 cut(s)	91, 171, 705
SfaNI	GCATC	4 cut(s)	273, 365, 409, 453
SfcI	CTRYAG	3 cut(s)	82, 258, 360
SinI	GGWCC	1 cut(s)	633
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	63, 128, 194, 690
SspMI	CTAG	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	706
TaqI	TCGA	2 cut(s)	584, 722
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	1 cut(s)	674
TseI	GCWGC	5 cut(s)	158, 206, 504, 577, 590
VpaK11BI	GGWCC	1 cut(s)	633
XagI	CCTNNNNNAGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.