Rh3BG200600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011566
Physical Location & Seq
Reverse (-)
17849276 .. 17849638
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG200600.1

Sequence Viewer

Length: 363 bp
ATGTCTCGGCAGGGCTATGCAGGGGTCTCGGCTGGTGTTCGGCAGGTGTCGGCAGGGGCTATGCAGGGCTTTCGGCAGATGTTGATAGGAGCAGGCACAGGGGTGCGCAGGTCTCGGCAGATGCGTGCAGGGCTGTCGGCAGGTCTCGGCAAGGGCCTAGGCAAGGCTATAGGCATGGAGCGTGCAGGGGCTGTCGGCAGATCTCGGCAGCAACTCGGCAGATGCGCGGAGGGCAGGGGTAGGTCTAATTTTTCCGACGGCCGGTTCATGGGTTTTCTGGCCCGTTCCGATGGTTTCGCAGCCAGTTCTGGGCTTCTTGGGACTAGGGCTTCGATATGTGGGACGGTGGTTGCAAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.32

Weight (kDa)

12.0

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc16I TGCGCA 1 cut(s) 107
Acc36I ACCTGC 3 cut(s) 34, 99, 131
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 259
AfiI CCNNNNNNNGG 4 cut(s) 163, 261, 268, 309
AleI CACNNNNGTG 1 cut(s) 101
Alw26I GTCTC 4 cut(s) 9, 31, 117, 149
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 3 cut(s) 154, 259, 279
ApeKI GCWGC 2 cut(s) 208, 299
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 2 cut(s) 108, 227
AspS9I GGNCC 2 cut(s) 154, 280
AvrII CCTAGG 1 cut(s) 157
BbvI GCAGC 2 cut(s) 220, 311
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 6 cut(s) 9, 43, 53, 87, 117, 151
BcoDI GTCTC 4 cut(s) 9, 31, 117, 149
BfaI CTAG 2 cut(s) 158, 324
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 3 cut(s) 34, 99, 131
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 209, 300
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 2 cut(s) 210, 301
BmgT120I GGNCC 2 cut(s) 154, 280
BmsI GCATC 2 cut(s) 111, 212
BsaI GGTCTC 3 cut(s) 31, 117, 149
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 261, 268, 309
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 4 cut(s) 163, 261, 268, 309
BseNI ACTGG 1 cut(s) 303
BseX3I CGGCCG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 220, 311
BsgI GTGCAG 2 cut(s) 147, 204
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 3 cut(s) 156, 261, 281
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 2 cut(s) 334, 355
BslI CCNNNNNNNGG 4 cut(s) 163, 261, 268, 309
BsmAI GTCTC 4 cut(s) 9, 31, 117, 149
BsmFI GGGAC 2 cut(s) 334, 355
BsnI GGCC 3 cut(s) 156, 261, 281
Bso31I GGTCTC 3 cut(s) 31, 117, 149
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 1 cut(s) 227
BspANI GGCC 3 cut(s) 156, 261, 281
BspFNI CGCG 1 cut(s) 227
BspMI ACCTGC 3 cut(s) 34, 99, 131
BspTNI GGTCTC 3 cut(s) 31, 117, 149
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 94, 126, 183
BstENI CCTNNNNNAGG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 2 cut(s) 108, 227
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 4 cut(s) 9, 31, 117, 149
BstMBI GATC 1 cut(s) 200
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 130, 231
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 220, 311
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BstZI CGGCCG 1 cut(s) 259
BsuRI GGCC 3 cut(s) 156, 261, 281
BveI ACCTGC 3 cut(s) 34, 99, 131
Cac8I GCNNGC 3 cut(s) 94, 126, 183
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 2 cut(s) 108, 227
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 154, 280
CviAII CATG 2 cut(s) 175, 268
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 259
EagI CGGCCG 1 cut(s) 259
EclXI CGGCCG 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 157
Eco31I GGTCTC 3 cut(s) 31, 117, 149
Eco52I CGGCCG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 178, 271
FaiI YATR 6 cut(s) 18, 62, 170, 176, 269, 337
FaqI GGGAC 2 cut(s) 334, 355
FatI CATG 2 cut(s) 174, 267
Fnu4HI GCNGC 2 cut(s) 209, 300
Fsp4HI GCNGC 2 cut(s) 209, 300
FspBI CTAG 2 cut(s) 158, 324
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 2 cut(s) 107, 226
GluI GCNGC 2 cut(s) 209, 300
HaeIII GGCC 3 cut(s) 156, 261, 281
HapII CCGG 1 cut(s) 262
HhaI GCGC 2 cut(s) 108, 227
Hin1II CATG 2 cut(s) 178, 271
Hin6I GCGC 2 cut(s) 106, 225
HinP1I GCGC 2 cut(s) 106, 225
HpaII CCGG 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 256, 289
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 5 cut(s) 20, 64, 128, 185, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 231
Hsp92II CATG 2 cut(s) 178, 271
HspAI GCGC 2 cut(s) 106, 225
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 89, 178
Lsp1109I GCAGC 2 cut(s) 220, 311
LweI GCATC 2 cut(s) 111, 212
MaeI CTAG 2 cut(s) 158, 324
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MflI RGATCY 1 cut(s) 200
MluCI AATT 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 1 cut(s) 223
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 130, 231
NdeII GATC 1 cut(s) 200
NlaIII CATG 2 cut(s) 178, 271
NmeAIII GCCGAG 5 cut(s) 8, 94, 126, 184, 195
NsbI TGCGCA 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PkrI GCNGC 2 cut(s) 210, 301
PspPI GGNCC 2 cut(s) 154, 280
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 101
SatI GCNGC 2 cut(s) 209, 300
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 2 cut(s) 154, 280
SetI ASST 4 cut(s) 48, 113, 145, 245
SfaNI GCATC 2 cut(s) 111, 212
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 158, 324
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 332
TasI AATT 1 cut(s) 247
TseI GCWGC 2 cut(s) 208, 299
TspDTI ATGAA 1 cut(s) 256
XagI CCTNNNNNAGG 1 cut(s) 161
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 2 cut(s) 158, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.