Rmu_ssc0000348.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000348.1
OG0011566
Physical Location & Seq
Reverse (-)
23090 .. 23506
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000348.1_g000009.1.cds

Sequence Viewer

Length: 318 bp
atgatgcggcagagcggtttggcggcttggctgatgcacgtgggctccactggggcctgctgcacgtgggctccattgtgggctgcaacaggtgggctggacaggatctcctccttttttttttctcttctttctgccggttcaggtcaggaagatgccggaggtggtgaggaaggctttgaaccgggcagagggacttttgctactcctggtggccggttcggtggtttgccagccggttctgggggtggggtcgccggttctggactgctggagttgagatcttcaaggtgggcggcggtggtttctgggatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.44

Weight (kDa)

5.64

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AciI CCGC 5 cut(s) 7, 15, 23, 296, 299
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 214
AcvI CACGTG 2 cut(s) 40, 66
AfiI CCNNNNNNNGG 2 cut(s) 191, 243
AgsI TTSAA 2 cut(s) 182, 288
AjnI CCWGG 1 cut(s) 208
AlwI GGATC 1 cut(s) 113
AoxI GGCC 2 cut(s) 54, 214
ApeKI GCWGC 2 cut(s) 60, 83
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 179
BanII GRGCYC 2 cut(s) 47, 73
BbrPI CACGTG 2 cut(s) 40, 66
BbvI GCAGC 2 cut(s) 47, 70
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 186
BglII AGATCT 1 cut(s) 281
BisI GCNGC 5 cut(s) 8, 24, 61, 84, 297
BlsI GCNGC 5 cut(s) 9, 25, 62, 85, 298
Bme1390I CCNGG 2 cut(s) 186, 210
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 3 cut(s) 46, 55, 72
BmrFI CCNGG 2 cut(s) 186, 210
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 24, 145
BmuI ACTGGG 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 186
BsaAI YACGTR 2 cut(s) 40, 66
BsaXI ACNNNNNCTCC 6 cut(s) 29, 55, 59, 85, 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 243
Bse118I RCCGGY 4 cut(s) 137, 216, 236, 257
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 191, 243
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 47, 70
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 2 cut(s) 56, 216
BsiSI CCGG 6 cut(s) 138, 159, 185, 217, 237, 258
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 191, 243
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 56, 216
Bsp1286I GDGCHC 2 cut(s) 47, 73
Bsp143I GATC 2 cut(s) 105, 281
BspACI CCGC 5 cut(s) 7, 15, 23, 296, 299
BspANI GGCC 2 cut(s) 56, 216
BspLI GGNNCC 3 cut(s) 46, 55, 72
BspPI GGATC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 4 cut(s) 137, 216, 236, 257
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 4 cut(s) 137, 216, 236, 257
BssMI GATC 2 cut(s) 105, 281
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 132
BstBAI YACGTR 2 cut(s) 40, 66
BstC8I GCNNGC 2 cut(s) 58, 234
BstKTI GATC 2 cut(s) 108, 284
BstMBI GATC 2 cut(s) 105, 281
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 184, 208
BstV1I GCAGC 2 cut(s) 47, 70
BstX2I RGATCY 2 cut(s) 105, 281
BstYI RGATCY 2 cut(s) 105, 281
BsuRI GGCC 2 cut(s) 56, 216
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 58, 234
Cfr10I RCCGGY 4 cut(s) 137, 216, 236, 257
Cfr13I GGNCC 1 cut(s) 54
DpnI GATC 2 cut(s) 107, 283
DpnII GATC 2 cut(s) 105, 281
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 47, 73
Eco72I CACGTG 2 cut(s) 40, 66
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 47, 73
FaqI GGGAC 1 cut(s) 208
Fnu4HI GCNGC 5 cut(s) 8, 24, 61, 84, 297
FriOI GRGCYC 2 cut(s) 47, 73
Fsp4HI GCNGC 5 cut(s) 8, 24, 61, 84, 297
GluI GCNGC 5 cut(s) 8, 24, 61, 84, 297
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 2 cut(s) 56, 216
HapII CCGG 6 cut(s) 138, 159, 185, 217, 237, 258
HpaII CCGG 6 cut(s) 138, 159, 185, 217, 237, 258
HphI GGTGA 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 149, 264
HpyAV CCTTC 1 cut(s) 167
HpyCH4IV ACGT 2 cut(s) 39, 65
HpyCH4V TGCA 3 cut(s) 37, 63, 86
HpySE526I ACGT 2 cut(s) 39, 65
Kzo9I GATC 2 cut(s) 105, 281
LmnI GCTCC 2 cut(s) 50, 76
Lsp1109I GCAGC 2 cut(s) 47, 70
LweI GCATC 2 cut(s) 24, 145
MaeII ACGT 2 cut(s) 39, 65
MalI GATC 2 cut(s) 107, 283
MbiI CCGCTC 1 cut(s) 15
MboI GATC 2 cut(s) 105, 281
MboII GAAGA 3 cut(s) 119, 164, 276
MflI RGATCY 2 cut(s) 105, 281
MhlI GDGCHC 2 cut(s) 47, 73
MnlI CCTC 4 cut(s) 121, 155, 163, 185
MspI CCGG 6 cut(s) 138, 159, 185, 217, 237, 258
MspR9I CCNGG 2 cut(s) 186, 210
MvaI CCWGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 105, 281
NlaIV GGNNCC 3 cut(s) 46, 55, 72
PkrI GCNGC 5 cut(s) 9, 25, 62, 85, 298
PmaCI CACGTG 2 cut(s) 40, 66
PmlI CACGTG 2 cut(s) 40, 66
Ppu21I YACGTR 2 cut(s) 40, 66
Psp6I CCWGG 1 cut(s) 208
PspCI CACGTG 2 cut(s) 40, 66
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 46, 55, 72
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 105, 281
SatI GCNGC 5 cut(s) 8, 24, 61, 84, 297
Sau3AI GATC 2 cut(s) 105, 281
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 186, 210
SduI GDGCHC 2 cut(s) 47, 73
SetI ASST 6 cut(s) 42, 68, 94, 148, 166, 293
SfaNI GCATC 2 cut(s) 24, 145
SsiI CCGC 5 cut(s) 7, 15, 23, 296, 299
StyD4I CCNGG 2 cut(s) 184, 208
TaiI ACGT 2 cut(s) 42, 68
TauI GCSGC 3 cut(s) 10, 26, 299
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 60, 83
TspRI CASTG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.