Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Reverse (-)

370788 .. 373821

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000089.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtactgctggcaaaatttggcagcaattggaggtctagagtggaataattgctgcgggtggtttagagcttccggtggccggttcggtaggtttccggccggttctggttgttctacctccagttctggacttctggtgtcgaggacttcaaggtatgctgcgggggccgaaaggtctctcgtcgcgaacaaggagttggagcacattctgcgtgttctgaacaccaatatggatggaaatcagaagatcatgtttgctctgacctccatcaagggtatcggtccccgtttagccaacatggtctggaagaaggccgacgtcgacatgaacaggagcaattgcattgctggagttgtgtatgctttgctaagaagcattgatacggatatggtaaggtgcgatacaaagaaacgagaaatcttaaatgttctaggatacggtaaggcaacgcctcataatgacaatgactgctacgcggcattgcagttaagcttttctcctcctgaaaagagtaaagggataggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

176

Amino Acids

19.2

Weight (kDa)

9.28

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	2 cut(s)	188, 479
AciI	CCGC	3 cut(s)	57, 164, 479
AcoI	YGGCCR	2 cut(s)	79, 99
AcsI	RAATTY	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	2 cut(s)	71, 495
AluI	AGCT	2 cut(s)	71, 495
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	183
AoxI	GGCC	4 cut(s)	79, 99, 168, 315
ApeKI	GCWGC	3 cut(s)	23, 54, 161
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	168, 284
AvaII	GGWCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	367, 399
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	35, 41, 148
BccI	CCATC	2 cut(s)	230, 278
BciVI	GTATCC	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	38, 434
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	4 cut(s)	24, 55, 162, 480
BlsI	GCNGC	4 cut(s)	25, 56, 163, 481
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	168, 284
BmiI	GGNNCC	2 cut(s)	169, 286
BpmI	CTGGAG	2 cut(s)	106, 372
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	2 cut(s)	81, 101
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	2 cut(s)	345, 482
Bse8I	GATNNNNATC	1 cut(s)	240
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	2 cut(s)	345, 482
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	492
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	3 cut(s)	35, 41, 148
Bsh1236I	CGCG	2 cut(s)	188, 479
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	81, 101, 170, 317
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	4 cut(s)	75, 82, 98, 102
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	4 cut(s)	81, 101, 170, 317
Bso31I	GGTCTC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	249
Bsp68I	TCGCGA	1 cut(s)	188
BspACI	CCGC	3 cut(s)	57, 164, 479
BspANI	GGCC	4 cut(s)	81, 101, 170, 317
BspFNI	CGCG	2 cut(s)	188, 479
BspLI	GGNNCC	2 cut(s)	169, 286
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	2 cut(s)	345, 482
BsrFI	RCCGGY	2 cut(s)	81, 101
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	2 cut(s)	81, 101
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	443
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	2 cut(s)	188, 479
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 211
BstUI	CGCG	2 cut(s)	188, 479
BstV1I	GCAGC	3 cut(s)	35, 41, 148
BstZI	CGGCCG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	4 cut(s)	81, 101, 170, 317
BtsCI	GGATG	1 cut(s)	241
BtuMI	TCGCGA	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	11
Cfr10I	RCCGGY	2 cut(s)	81, 101
Cfr13I	GGNCC	2 cut(s)	168, 284
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	253, 301, 328
CviJI	RGCY	7 cut(s)	71, 81, 101, 170, 296, 317, 495
CviKI_1	RGCY	7 cut(s)	71, 81, 101, 170, 296, 317, 495
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EaeI	YGGCCR	2 cut(s)	79, 99
EagI	CGGCCG	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	284
Eco52I	CGGCCG	1 cut(s)	99
FaeI	CATG	3 cut(s)	256, 304, 331
FaiI	YATR	8 cut(s)	159, 233, 254, 302, 329, 363, 392, 459
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	3 cut(s)	252, 300, 327
FauI	CCCGC	2 cut(s)	50, 157
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	24, 55, 162, 480
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	4 cut(s)	24, 55, 162, 480
FspBI	CTAG	2 cut(s)	38, 434
GluI	GCNGC	4 cut(s)	24, 55, 162, 480
GsuI	CTGGAG	2 cut(s)	106, 372
HaeIII	GGCC	4 cut(s)	81, 101, 170, 317
HapII	CCGG	4 cut(s)	75, 82, 98, 102
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	256, 304, 331
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	493
HpaII	CCGG	4 cut(s)	75, 82, 98, 102
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	222, 246, 264
Hpy188III	TCNNGA	5 cut(s)	38, 129, 187, 307, 506
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	3 cut(s)	188, 323, 326
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	345, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 211
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	256, 304, 331
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	202, 336
Lsp1109I	GCAGC	3 cut(s)	35, 41, 148
MaeI	CTAG	2 cut(s)	38, 434
MaeII	ACGT	1 cut(s)	321
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	2 cut(s)	259, 322
MfeI	CAATTG	2 cut(s)	27, 340
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	4 cut(s)	16, 27, 49, 340
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	26, 130, 138, 277, 465, 513
MseI	TTAA	3 cut(s)	425, 491, 529
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	4 cut(s)	75, 82, 98, 102
MunI	CAATTG	2 cut(s)	27, 340
MvnI	CGCG	2 cut(s)	188, 479
MwoI	GCNNNNNNNGC	2 cut(s)	167, 211
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	3 cut(s)	256, 304, 331
NlaIV	GGNNCC	2 cut(s)	169, 286
NruI	TCGCGA	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	25, 56, 163, 481
PspN4I	GGNNCC	2 cut(s)	169, 286
PspPI	GGNCC	2 cut(s)	168, 284
RruI	TCGCGA	1 cut(s)	188
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	425, 491, 529
SatI	GCNGC	4 cut(s)	24, 55, 162, 480
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	168, 284
SduI	GDGCHC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	16, 27, 49, 340
SsiI	CCGC	3 cut(s)	57, 164, 479
SspMI	CTAG	2 cut(s)	38, 434
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	143, 324
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	4 cut(s)	16, 27, 49, 340
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	3 cut(s)	425, 491, 529
Tru9I	TTAA	3 cut(s)	425, 491, 529
TseI	GCWGC	3 cut(s)	23, 54, 161
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	38, 434
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.