Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011566

Physical Location & Seq

Genomic Coordinates Reverse (-)

68129064 .. 68130699

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG481700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAGGAAACTGGTGGCCGGAGCTAGGCAGGGAGGTGCAGGGCAGTTGCAGGGGCTGCTGCAGGGCTTGTGCAGGGGTGCTGCAGGGACCGTGTAAGGGTTGTACGGAGGATGTGCAGGGCCTGTCGGCAGCTGCTGCGCAGGGGCTCGGCAGGGCAGGCACAGGGGTGCACAGGGCTCGGCAGATGCGCGCGGGGCTTCTCAGCAGATGTCAGCAACACTCGGCAGATCTCTGCAGGAAGCGTGCAGGGCTCTCGGCGGATGCTTGCAGGGCTGTCGACAGAGGCTCGGCAGCACTGGGCAGATCTCGGCAGATCTCGGCAGGGGCGTGCAGGGACCTCGGTACGACTCCTCAGATGCTTGCAGGGGGCAGGGGCCGGTTCGATTTTTCCGAAGGCCTGTTCAGGGGTTTTCCGGTTGGTTCCTCCGCGGGTTCTGGGTTCCTTGAGGCTAGGGCTTCAATATGTGAGGCGGTAAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

16.56

Weight (kDa)

9.35

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25371
rosa_chinensis	RchiOBHm_Chr6g0258161
rosa_laevigata	RLG00000034050
rosa_multiflora	Rmu_sc0000594.1_g000077 Rmu_sc0000929.1_g000024 Rmu_sc0001155.1_g000027 Rmu_sc0003441.1_g000089 Rmu_ssc0000348.1_g000009
rosa_roxburghii	Rroxscaffold_2G00117050 Rroxscaffold_3G00272090 Rroxscaffold_5G00352490 Rroxscaffold_6G00430510
rosa_samantha	Rh1AG037700 Rh1AG292100 Rh1AG331700 Rh1BG100900 Rh2BG481700 Rh3BG200600 Rh3BG302000 Rh3DG005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	3 cut(s)	192, 194, 431
AciI	CCGC	5 cut(s)	194, 260, 429, 431, 473
AcoI	YGGCCR	1 cut(s)	17
AfaI	GTAC	2 cut(s)	106, 346
AfiI	CCNNNNNNNGG	3 cut(s)	26, 98, 406
AgsI	TTSAA	1 cut(s)	462
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	25, 134
AluI	AGCT	2 cut(s)	25, 134
Alw21I	GWGCWC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	170
AlwNI	CAGNNNCTG	3 cut(s)	57, 124, 137
AoxI	GGCC	4 cut(s)	17, 121, 376, 397
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	7 cut(s)	57, 60, 82, 131, 134, 137, 293
AspLEI	GCGC	3 cut(s)	142, 192, 194
AspS9I	GGNCC	4 cut(s)	89, 121, 337, 376
AvaII	GGWCC	2 cut(s)	89, 337
BaeGI	GKGCMC	1 cut(s)	174
BanII	GRGCYC	3 cut(s)	150, 181, 255
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	7 cut(s)	44, 47, 69, 121, 124, 143, 305
BcgI	CGANNNNNNTGC	8 cut(s)	161, 195, 237, 259, 271, 293, 322, 356
BfaI	CTAG	2 cut(s)	26, 453
BfmI	CTRYAG	3 cut(s)	61, 83, 235
BglII	AGATCT	3 cut(s)	229, 305, 315
BisI	GCNGC	7 cut(s)	58, 61, 83, 132, 135, 138, 294
BlsI	GCNGC	7 cut(s)	59, 62, 84, 133, 136, 139, 295
Bme18I	GGWCC	2 cut(s)	89, 337
BmgT120I	GGNCC	4 cut(s)	89, 121, 337, 376
BmiI	GGNNCC	5 cut(s)	90, 338, 377, 424, 443
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	3 cut(s)	177, 253, 348
BmuI	ACTGGG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	340, 429
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 98, 406
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	17, 303
BseDI	CCNNGG	2 cut(s)	340, 429
BseGI	GGATG	2 cut(s)	118, 268
BseLI	CCNNNNNNNGG	3 cut(s)	26, 98, 406
BseMII	CTCAG	2 cut(s)	217, 368
BseNI	ACTGG	2 cut(s)	17, 303
BsePI	GCGCGC	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	7 cut(s)	44, 47, 69, 121, 124, 143, 305
BsgI	GTGCAG	5 cut(s)	59, 93, 137, 267, 352
Bsh1236I	CGCG	3 cut(s)	192, 194, 431
BshFI	GGCC	4 cut(s)	19, 123, 378, 399
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	20, 379, 416
BslFI	GGGAC	2 cut(s)	102, 350
BslI	CCNNNNNNNGG	3 cut(s)	26, 98, 406
BsmFI	GGGAC	2 cut(s)	102, 350
BsnI	GGCC	4 cut(s)	19, 123, 378, 399
Bsp1286I	GDGCHC	4 cut(s)	150, 174, 181, 255
Bsp143I	GATC	3 cut(s)	229, 305, 315
BspACI	CCGC	5 cut(s)	194, 260, 429, 431, 473
BspANI	GGCC	4 cut(s)	19, 123, 378, 399
BspCNI	CTCAG	2 cut(s)	216, 367
BspFNI	CGCG	3 cut(s)	192, 194, 431
BspLI	GGNNCC	5 cut(s)	90, 338, 377, 424, 443
BspMAI	CTGCAG	3 cut(s)	65, 87, 239
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	17, 303
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	340, 429
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	3 cut(s)	229, 305, 315
Bst4CI	ACNGT	1 cut(s)	93
BstAPI	GCANNNNNTGC	2 cut(s)	57, 137
BstC8I	GCNNGC	6 cut(s)	160, 192, 246, 268, 331, 363
BstDEI	CTNAG	2 cut(s)	203, 354
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	118, 268
BstFNI	CGCG	3 cut(s)	192, 194, 431
BstHHI	GCGC	3 cut(s)	142, 192, 194
BstKTI	GATC	3 cut(s)	232, 308, 318
BstMBI	GATC	3 cut(s)	229, 305, 315
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 137, 159, 196, 250, 272
BstSFI	CTRYAG	3 cut(s)	61, 83, 235
BstSLI	GKGCMC	1 cut(s)	174
BstUI	CGCG	3 cut(s)	192, 194, 431
BstV1I	GCAGC	7 cut(s)	44, 47, 69, 121, 124, 143, 305
BstX2I	RGATCY	3 cut(s)	229, 305, 315
BstYI	RGATCY	3 cut(s)	229, 305, 315
BsuRI	GGCC	4 cut(s)	19, 123, 378, 399
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	118, 268
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	6 cut(s)	160, 192, 246, 268, 331, 363
CaiI	CAGNNNCTG	3 cut(s)	57, 124, 137
CfoI	GCGC	3 cut(s)	142, 192, 194
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	89, 121, 337, 376
Cfr42I	CCGCGG	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	105, 345
CviQI	GTAC	2 cut(s)	105, 345
DdeI	CTNAG	2 cut(s)	203, 354
DpnI	GATC	3 cut(s)	231, 307, 317
DpnII	GATC	3 cut(s)	229, 305, 315
EaeI	YGGCCR	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	3 cut(s)	150, 181, 255
Eco47I	GGWCC	2 cut(s)	89, 337
EcoO109I	RGGNCCY	2 cut(s)	121, 337
EcoT38I	GRGCYC	3 cut(s)	150, 181, 255
FaiI	YATR	1 cut(s)	466
FaqI	GGGAC	2 cut(s)	102, 350
FauI	CCCGC	2 cut(s)	187, 424
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	7 cut(s)	58, 61, 83, 132, 135, 138, 294
FokI	GGATG	2 cut(s)	125, 275
FriOI	GRGCYC	3 cut(s)	150, 181, 255
Fsp4HI	GCNGC	7 cut(s)	58, 61, 83, 132, 135, 138, 294
FspBI	CTAG	2 cut(s)	26, 453
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	3 cut(s)	141, 191, 193
GluI	GCNGC	7 cut(s)	58, 61, 83, 132, 135, 138, 294
HaeIII	GGCC	4 cut(s)	19, 123, 378, 399
HapII	CCGG	3 cut(s)	20, 379, 416
HhaI	GCGC	3 cut(s)	142, 192, 194
Hin6I	GCGC	3 cut(s)	140, 190, 192
HinP1I	GCGC	3 cut(s)	140, 190, 192
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	3 cut(s)	20, 379, 416
Hpy166II	GTNNAC	2 cut(s)	172, 280
Hpy188I	TCNGA	2 cut(s)	357, 394
Hpy8I	GTNNAC	2 cut(s)	172, 280
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 137, 159, 196, 250, 272
HpyF3I	CTNAG	2 cut(s)	203, 354
HspAI	GCGC	3 cut(s)	140, 190, 192
KspI	CCGCGG	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	229, 305, 315
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	7 cut(s)	44, 47, 69, 121, 124, 143, 305
LweI	GCATC	3 cut(s)	177, 253, 348
MaeI	CTAG	2 cut(s)	26, 453
MalI	GATC	3 cut(s)	231, 307, 317
MboI	GATC	3 cut(s)	229, 305, 315
MflI	RGATCY	3 cut(s)	229, 305, 315
MhlI	GDGCHC	4 cut(s)	150, 174, 181, 255
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	8 cut(s)	28, 103, 278, 350, 363, 436, 442, 463
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	2 cut(s)	134, 431
MspI	CCGG	3 cut(s)	20, 379, 416
MvnI	CGCG	3 cut(s)	192, 194, 431
MwoI	GCNNNNNNNGC	6 cut(s)	57, 137, 159, 196, 250, 272
NdeII	GATC	3 cut(s)	229, 305, 315
NlaIV	GGNNCC	5 cut(s)	90, 338, 377, 424, 443
NmeAIII	GCCGAG	7 cut(s)	129, 160, 203, 236, 269, 289, 299
NsbI	TGCGCA	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	167
PauI	GCGCGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	326, 390
PkrI	GCNGC	7 cut(s)	59, 62, 84, 133, 136, 139, 295
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
PspN4I	GGNNCC	5 cut(s)	90, 338, 377, 424, 443
PspPI	GGNCC	4 cut(s)	89, 121, 337, 376
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	3 cut(s)	65, 87, 239
PstNI	CAGNNNCTG	3 cut(s)	57, 124, 137
PsuI	RGATCY	3 cut(s)	229, 305, 315
PteI	GCGCGC	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	106, 346
RsaNI	GTAC	2 cut(s)	105, 345
RseI	CAYNNNNRTG	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	278
SatI	GCNGC	7 cut(s)	58, 61, 83, 132, 135, 138, 294
Sau3AI	GATC	3 cut(s)	229, 305, 315
Sau96I	GGNCC	4 cut(s)	89, 121, 337, 376
SchI	GAGTC	1 cut(s)	343
SduI	GDGCHC	4 cut(s)	150, 174, 181, 255
SetI	ASST	4 cut(s)	27, 39, 136, 342
SfaNI	GCATC	3 cut(s)	177, 253, 348
SfcI	CTRYAG	3 cut(s)	61, 83, 235
Sfr303I	CCGCGG	1 cut(s)	432
SgrBI	CCGCGG	1 cut(s)	432
SinI	GGWCC	2 cut(s)	89, 337
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	5 cut(s)	194, 260, 429, 431, 473
SspMI	CTAG	2 cut(s)	26, 453
StuI	AGGCCT	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	279, 384
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	7 cut(s)	57, 60, 82, 131, 134, 137, 293
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	303
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	89, 337
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	2 cut(s)	26, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.