Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Reverse (-)

20295276 .. 20297570

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGGAAATGGATCTAACACCAAAGTCAGCGGCAGCAGCGTTCGAGGGAGATGGTGGAGGATATTACGTATGGTCATTTCCGGCGCTTGGCGAGGCCAACGTAGGTGCCGGAAAGCTTGTGCTGAAGCCTAGTGGCTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGATATGTTCTTCAAGGCGAGGATGGAGTAGTTGGAATGGTATTCCCCAACACATCGGAGGAGGTGGTGTTGAAGCTTAAGAAAGGAGACGTGATTCCGGTACCACTCGGAGCAGTCTCATGGTGGTTCAACAATGGCGACTCAGCCGATGACCTTGTCATCGTGTTCTTGGGCGAAACAACAAAGGCTTACACTCCTGGTGTATTTACTTATTTCTTCATTGCAGGAACTCAAAGTCTTCTCGGAGGTTTCTCTACTGACTTCATTAGCAAGTCATTCAGTATTACCAAAGATGAAGCTGATGAGGTCACCAAAAACCAGACAGGAGTCCTGCTAGTTAAGGTAGAAAAGGGAAAGACCATGCCTAAGCCCAACGCCCACCTCACCCACAAACTTGTTCATCAACTCAATGTCAGTGCCACTGTAACTGAGAAGGAGTTTCCTTTTCTTAACCAAGCTGGGTTAAGTGCCAACCTCATAAAACTTGAACCTTCTGCAATTTCCTCCCCCATTTACACAACCGATTCTACGGTTCAATTGATCTATGTGGTTGGAGGAGGGGGTCGGATCCAAATCACGGGTCTTAATGGTCAGCGTGTGTTGGATGCGGAAGTAGCTGCCGGTCAGTTGATCGTTGTGCCTAGGTTTTTCATGGTGGCGAAACTTGCCGGTGAAAAAGGAATGGAATGTTTCTCTGTTATTACAAGTTCCCGGGCTACTCTGGAAGACTTTACTGGCAAGACATCAGTGTTGAGGGCATTATCACCTGAGGTGCTACAAATATCCCTCAATATAAACCCAGAATTGCAGACTCTTCTGCAGTCAAAGAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

337

Amino Acids

35.82

Weight (kDa)

5.25

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	18 - 157	5.5e-15	Cupin
Cupin_1	PF00190	195 - 326	2.9e-21	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	107, 274
AciI	CCGC	3 cut(s)	5, 32, 782
AclWI	GGATC	3 cut(s)	21, 736, 749
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	89, 751
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	188, 247, 304, 662, 710
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	118, 250, 473, 632, 791
AluI	AGCT	5 cut(s)	118, 250, 473, 632, 791
Alw26I	GTCTC	2 cut(s)	255, 295
AlwI	GGATC	3 cut(s)	21, 736, 749
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	885
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	35, 38, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
Asp718I	GGTACC	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	88
AsuC2I	CCSGG	2 cut(s)	886, 887
AsuHPI	GGTGA	4 cut(s)	475, 550, 857, 930
AvaI	CYCGRG	1 cut(s)	885
AvrII	CCTAGG	1 cut(s)	815
AxyI	CCTNAGG	1 cut(s)	942
BamHI	GGATCC	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	107, 274
BbsI	GAAGAC	2 cut(s)	404, 906
BbvI	GCAGC	3 cut(s)	47, 50, 778
BccI	CCATC	2 cut(s)	47, 191
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	886, 887
BcoDI	GTCTC	2 cut(s)	255, 295
BfaI	CTAG	3 cut(s)	132, 509, 816
BfmI	CTRYAG	1 cut(s)	992
BfoI	RGCGCY	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	4 cut(s)	33, 36, 39, 792
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	4 cut(s)	34, 37, 40, 793
Bme1390I	CCNGG	3 cut(s)	372, 886, 887
BmeT110I	CYCGRG	1 cut(s)	885
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	109, 276, 743
BmrFI	CCNGG	3 cut(s)	372, 886, 887
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	182
BoxI	GACNNNNGTC	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	404, 906
Bpu10I	CCTNAGC	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	886, 887
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	746
BsaJI	CCNNGG	2 cut(s)	815, 885
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 751
Bse118I	RCCGGY	2 cut(s)	794, 842
Bse1I	ACTGG	2 cut(s)	177, 913
Bse21I	CCTNAGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	746
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	815, 885
BseGI	GGATG	2 cut(s)	202, 784
BseJI	GATNNNNATC	1 cut(s)	746
BseLI	CCNNNNNNNGG	2 cut(s)	89, 751
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	3 cut(s)	330, 594, 933
BseNI	ACTGG	2 cut(s)	177, 913
BseRI	GAGGAG	2 cut(s)	248, 744
BseXI	GCAGC	3 cut(s)	47, 50, 778
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	2 cut(s)	107, 274
BsiHKCI	CYCGRG	1 cut(s)	885
BsiSI	CCGG	6 cut(s)	83, 111, 272, 795, 843, 886
BslI	CCNNNNNNNGG	2 cut(s)	89, 751
BsmAI	GTCTC	2 cut(s)	255, 295
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	885
Bsp143I	GATC	4 cut(s)	13, 714, 741, 804
BspACI	CCGC	3 cut(s)	5, 32, 782
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	329, 595, 934
BspLI	GGNNCC	3 cut(s)	109, 276, 743
BspMAI	CTGCAG	1 cut(s)	996
BspPI	GGATC	3 cut(s)	21, 736, 749
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	2 cut(s)	107, 274
BspTI	CTTAAG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	2 cut(s)	794, 842
BsrI	ACTGG	2 cut(s)	177, 913
BssAI	RCCGGY	2 cut(s)	794, 842
BssECI	CCNNGG	2 cut(s)	815, 885
BssMI	GATC	4 cut(s)	13, 714, 741, 804
BssT1I	CCWWGG	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	598, 706
Bst6I	CTCTTC	2 cut(s)	150, 993
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	70
BstDEI	CTNAG	4 cut(s)	316, 540, 603, 942
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	202, 784
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	4 cut(s)	16, 717, 744, 807
BstMAI	GTCTC	2 cut(s)	255, 295
BstMBI	GATC	4 cut(s)	13, 714, 741, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 164, 788, 839
BstNI	CCWGG	1 cut(s)	372
BstPAI	GACNNNNGTC	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	3 cut(s)	370, 884, 885
BstSFI	CTRYAG	1 cut(s)	992
BstSNI	TACGTA	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	47, 50, 778
BstV2I	GAAGAC	2 cut(s)	404, 906
BstX2I	RGATCY	2 cut(s)	13, 741
BstYI	RGATCY	2 cut(s)	13, 741
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	202, 784
BtsIMutI	CAGTG	3 cut(s)	594, 595, 927
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	2 cut(s)	794, 842
Cfr9I	CCCGGG	1 cut(s)	885
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	294, 535, 826
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	4 cut(s)	316, 540, 603, 942
DpnI	GATC	4 cut(s)	15, 716, 743, 806
DpnII	GATC	4 cut(s)	13, 714, 741, 804
Eam1104I	CTCTTC	2 cut(s)	150, 993
EarI	CTCTTC	2 cut(s)	150, 993
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	885
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	815
ErhI	CCWWGG	1 cut(s)	815
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	3 cut(s)	297, 538, 829
FaiI	YATR	9 cut(s)	73, 156, 180, 295, 536, 653, 720, 827, 968
FatI	CATG	3 cut(s)	293, 534, 825
Fnu4HI	GCNGC	4 cut(s)	33, 36, 39, 792
FokI	GGATG	2 cut(s)	209, 791
Fsp4HI	GCNGC	4 cut(s)	33, 36, 39, 792
FspBI	CTAG	3 cut(s)	132, 509, 816
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	4 cut(s)	33, 36, 39, 792
GsaI	CCCAGC	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	6 cut(s)	83, 111, 272, 795, 843, 886
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	297, 538, 829
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	2 cut(s)	116, 248
HinfI	GANTC	6 cut(s)	161, 268, 314, 501, 698, 985
HpaII	CCGG	6 cut(s)	83, 111, 272, 795, 843, 886
HphI	GGTGA	4 cut(s)	475, 550, 857, 930
Hpy188I	TCNGA	4 cut(s)	232, 284, 419, 741
Hpy188III	TCNNGA	1 cut(s)	896
HpyAV	CCTTC	2 cut(s)	601, 675
HpyCH4III	ACNGT	2 cut(s)	598, 706
HpyCH4IV	ACGT	3 cut(s)	69, 102, 264
HpyCH4V	TGCA	5 cut(s)	158, 398, 671, 982, 994
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 164, 788, 839
HpyF3I	CTNAG	4 cut(s)	316, 540, 603, 942
HpySE526I	ACGT	3 cut(s)	69, 102, 264
Hsp92II	CATG	3 cut(s)	297, 538, 829
HspAI	GCGC	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	278
Kzo9I	GATC	4 cut(s)	13, 714, 741, 804
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	3 cut(s)	47, 50, 778
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	132, 509, 816
MaeII	ACGT	3 cut(s)	69, 102, 264
MaeIII	GTNAC	3 cut(s)	481, 598, 1004
MalI	GATC	4 cut(s)	15, 716, 743, 806
MboI	GATC	4 cut(s)	13, 714, 741, 804
MboII	GAAGA	6 cut(s)	137, 176, 382, 404, 911, 980
MfeI	CAATTG	1 cut(s)	710
MflI	RGATCY	2 cut(s)	13, 741
MluCI	AATT	3 cut(s)	672, 710, 977
MlyI	GAGTC	3 cut(s)	308, 510, 979
MmeI	TCCRAC	4 cut(s)	187, 706, 719, 756
MseI	TTAA	5 cut(s)	252, 513, 624, 638, 759
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	6 cut(s)	83, 111, 272, 795, 843, 886
MspR9I	CCNGG	3 cut(s)	372, 886, 887
MunI	CAATTG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	38, 164, 788, 839
NciI	CCSGG	2 cut(s)	886, 887
NdeII	GATC	4 cut(s)	13, 714, 741, 804
NlaIII	CATG	3 cut(s)	297, 538, 829
NlaIV	GGNNCC	3 cut(s)	109, 276, 743
NmuCI	GTSAC	2 cut(s)	481, 1004
PciSI	GCTCTTC	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	161, 268, 698
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	34, 37, 40, 793
PleI	GAGTC	3 cut(s)	308, 509, 979
PpsI	GAGTC	3 cut(s)	308, 509, 979
Ppu21I	YACGTR	1 cut(s)	70
PshAI	GACNNNNGTC	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	370
PspEI	GGTNACC	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	109, 276, 743
PstI	CTGCAG	1 cut(s)	996
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	13, 741
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	5 cut(s)	252, 513, 624, 638, 759
SatI	GCNGC	4 cut(s)	33, 36, 39, 792
Sau3AI	GATC	4 cut(s)	13, 714, 741, 804
SchI	GAGTC	3 cut(s)	308, 510, 979
ScrFI	CCNGG	3 cut(s)	372, 886, 887
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	992
SmaI	CCCGGG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	3 cut(s)	672, 710, 977
SsiI	CCGC	3 cut(s)	5, 32, 782
SspMI	CTAG	3 cut(s)	132, 509, 816
StyD4I	CCNGG	3 cut(s)	370, 884, 885
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	2 cut(s)	598, 706
TaiI	ACGT	3 cut(s)	72, 105, 267
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	672, 710, 977
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	161, 268, 698
Tru1I	TTAA	5 cut(s)	252, 513, 624, 638, 759
Tru9I	TTAA	5 cut(s)	252, 513, 624, 638, 759
TscAI	CASTG	3 cut(s)	595, 601, 927
TseFI	GTSAC	2 cut(s)	481, 1004
TseI	GCWGC	3 cut(s)	35, 38, 791
Tsp45I	GTSAC	2 cut(s)	481, 1004
TspDTI	ATGAA	5 cut(s)	382, 427, 483, 563, 814
TspMI	CCCGGG	1 cut(s)	885
TspRI	CASTG	3 cut(s)	595, 601, 927
Tth111I	GACNNNGTC	1 cut(s)	329
Vha464I	CTTAAG	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	885
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	3 cut(s)	132, 509, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.