RchiOBHm_Chr7g0198921

11S globulin seed storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002867
Physical Location & Seq
Forward (+)
16917458 .. 16918025
568 bp
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UTR
Exon/CDS
Intron
PRQ17799

Sequence Viewer

Length: 510 bp
ATGGCGGAGATAGATCTAACGCCAAAGTTAGCAGCAGTAGAGTTCGAGGGAGATGGTGGAGGATATCACACATGGTCAGCTCCAGCACTTGGCAAGGCCAAAGTTGGTGCCGGCAAGCTTGTTTTAAAGCCGAGTGGTTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGGTATGTTGTTCAATGTGAGGATGGAGTAATTGGGATGGTTTTACCCAACACATCAGAGGAGGTGGTGTTGAAGCTTAAGAAAGGAGATGTGATTCCGGTACCAGTCGGAGCAGTCTCCTGGTGGTTCAACAATGGCGACTCACCCGATGACCTTGTTATCATTTTCTTGGGCGATACTACAAAGGCCTACACTCCTGGTCGGTTTACTTACTTCTTCATGGCAGGAACTCAAAGTCTTCTCGGAGGTTTCTCGACTGACTTCATTAGCAAGTCATTCAATATCAGCAAAGATGAAGCTGATGAGGTCACCAAAAACCAGTCAGGGGTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

169

Amino Acids

18.04

Weight (kDa)

4.83

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 15 - 158 4.4e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 274
AccB1I GGYRCC 2 cut(s) 107, 274
AccB7I CCANNNNNTGG 1 cut(s) 89
AciI CCGC 1 cut(s) 5
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 3 cut(s) 89, 174, 499
AflII CTTAAG 1 cut(s) 251
AgsI TTSAA 4 cut(s) 188, 247, 304, 454
AjnI CCWGG 2 cut(s) 293, 370
AluBI AGCT 4 cut(s) 80, 118, 250, 473
AluI AGCT 4 cut(s) 80, 118, 250, 473
Alw26I GTCTC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 2 cut(s) 96, 360
ApeKI GCWGC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 309, 475
BanI GGYRCC 2 cut(s) 107, 274
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 44
BccI CCATC 3 cut(s) 47, 191, 205
BciT130I CCWGG 2 cut(s) 295, 372
BcoDI GTCTC 1 cut(s) 295
BfrI CTTAAG 1 cut(s) 251
BglII AGATCT 1 cut(s) 13
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 295, 372
BmiI GGNNCC 2 cut(s) 109, 276
BmrFI CCNGG 2 cut(s) 295, 372
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 174, 499
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 177, 278, 493
BseBI CCWGG 2 cut(s) 295, 372
BseGI GGATG 2 cut(s) 202, 216
BseLI CCNNNNNNNGG 3 cut(s) 89, 174, 499
BseNI ACTGG 3 cut(s) 177, 278, 493
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 2 cut(s) 98, 362
BshNI GGYRCC 2 cut(s) 107, 274
BsiSI CCGG 2 cut(s) 111, 272
BslI CCNNNNNNNGG 3 cut(s) 89, 174, 499
BsmAI GTCTC 1 cut(s) 295
BsnI GGCC 2 cut(s) 98, 362
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 98, 362
BspLI GGNNCC 2 cut(s) 109, 276
BspQI GCTCTTC 1 cut(s) 150
BspT107I GGYRCC 2 cut(s) 107, 274
BspTI CTTAAG 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 3 cut(s) 177, 278, 493
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 2 cut(s) 295, 372
Bst6I CTCTTC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 112, 116
BstEII GGTNACC 1 cut(s) 481
BstF5I GGATG 2 cut(s) 202, 216
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 2 cut(s) 295, 372
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 293, 370
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 2 cut(s) 98, 362
BtsCI GGATG 2 cut(s) 202, 216
Cac8I GCNNGC 2 cut(s) 112, 116
CaiI CAGNNNCTG 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 110
Csp6I GTAC 1 cut(s) 275
CviAII CATG 2 cut(s) 72, 394
CviJI RGCY 7 cut(s) 80, 98, 118, 130, 250, 362, 473
CviKI_1 RGCY 7 cut(s) 80, 98, 118, 130, 250, 362, 473
CviQI GTAC 1 cut(s) 275
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DraI TTTAAA 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 362
Eco32I GATATC 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 481
EcoO65I GGTNACC 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 293, 370
EcoRV GATATC 1 cut(s) 65
FaeI CATG 2 cut(s) 75, 397
FaiI YATR 4 cut(s) 73, 156, 180, 395
FatI CATG 2 cut(s) 71, 393
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 209, 223
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 98, 362
HapII CCGG 2 cut(s) 111, 272
Hin1II CATG 2 cut(s) 75, 397
HindIII AAGCTT 2 cut(s) 116, 248
HinfI GANTC 3 cut(s) 161, 268, 314
HpaII CCGG 2 cut(s) 111, 272
HphI GGTGA 2 cut(s) 309, 475
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 232, 284, 419
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 75, 397
KpnI GGTACC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 85, 284
Lsp1109I GCAGC 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 3 cut(s) 137, 382, 404
MflI RGATCY 1 cut(s) 13
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 40, 53, 159, 187, 226, 229, 413, 472
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 2 cut(s) 125, 252
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 2 cut(s) 111, 272
MspR9I CCNGG 2 cut(s) 295, 372
MvaI CCWGG 2 cut(s) 295, 372
MwoI GCNNNNNNNGC 1 cut(s) 164
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 75, 397
NlaIV GGNNCC 2 cut(s) 109, 276
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 481
PceI AGGCCT 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 161, 268
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 293, 370
PspEI GGTNACC 1 cut(s) 481
PspGI CCWGG 2 cut(s) 293, 370
PspN4I GGNNCC 2 cut(s) 109, 276
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 125, 252
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 295, 372
SetI ASST 8 cut(s) 82, 120, 240, 252, 330, 424, 475, 483
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 1 cut(s) 5
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 293, 370
TaqI TCGA 2 cut(s) 45, 428
TasI AATT 1 cut(s) 204
TfiI GAWTC 2 cut(s) 161, 268
Tru1I TTAA 2 cut(s) 125, 252
Tru9I TTAA 2 cut(s) 125, 252
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 382, 427, 483
Van91I CCANNNNNTGG 1 cut(s) 89
Vha464I CTTAAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.