Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010595.1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1173

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 821 bp

gtgaggatggactagttggaatggtattccccaacacatcagaggaggtagtattgaagctcaagaaaggagacgtgattccggtaccactcggagcagtctcatggtggttcaacaatggcggctcatccaacgaccttgttatcgttttcttgggagaaactacaaaggcttacactcctggtctgtttacttacttcttcatagcaggaactcaaagtcttctcggaggtttctcaactgacttcattagcaagtcattcaatattaccaaagatgaagcagatgaggtcaccaaaaaccagacaggggttttgctagttaagctagaacagggaaagaccatgcctaagcccaacgcactcatcacccacaaacttgttcatcaactcactgtcagtgccactttgactgagaaggagtttccttttcttaaccaggctgggttaagtgccaacctcataaaactagaagcctatgcaatttcctctcccatttacactactgattcttcggttcaagtgatctatgtcgttggaggaggtggtcgggtccaaattgcgggtcttaatggtcagagtgcgttggatgcggaagtaactgcgggtcacttgatcgttgtgcctaggtttttcatggtagcgaaacttgccggggaaaaaggaatggagtgtttctctgtcattacaagttcccgggctgtcctggaagacttaactggcaagacatcagtattgagggcattatcacctgaggtgctacaaatatccctaaatataaatccagagttgctgacaattctccaatcaaagattaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

272

Amino Acids

29.17

Weight (kDa)

5.47

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	4 cut(s)	122, 562, 592, 604
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	309, 561
AgsI	TTSAA	4 cut(s)	57, 114, 264, 520
AhlI	ACTAGT	1 cut(s)	12
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	180, 437, 704
AluBI	AGCT	2 cut(s)	60, 327
AluI	AGCT	2 cut(s)	60, 327
Alw26I	GTCTC	2 cut(s)	65, 105
Ama87I	CYCGRG	1 cut(s)	695
ArsI	GACNNNNNNTTYG	4 cut(s)	297, 329, 549, 581
Asp718I	GGTACC	1 cut(s)	84
AspA2I	CCTAGG	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	3 cut(s)	654, 696, 697
AsuHPI	GGTGA	3 cut(s)	285, 360, 740
AvaI	CYCGRG	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	552
AvrII	CCTAGG	1 cut(s)	625
AxyI	CCTNAGG	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	214, 716
BciT130I	CCWGG	3 cut(s)	182, 439, 706
BcnI	CCSGG	3 cut(s)	654, 696, 697
BcoDI	GTCTC	2 cut(s)	65, 105
BcuI	ACTAGT	1 cut(s)	12
BfaI	CTAG	6 cut(s)	13, 319, 328, 469, 626, 819
BisI	GCNGC	1 cut(s)	123
BlnI	CCTAGG	1 cut(s)	625
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	6 cut(s)	182, 439, 654, 696, 697, 706
Bme18I	GGWCC	1 cut(s)	552
BmeT110I	CYCGRG	1 cut(s)	695
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	86, 553
BmrFI	CCNGG	6 cut(s)	182, 439, 654, 696, 697, 706
BmsI	GCATC	1 cut(s)	579
BpiI	GAAGAC	2 cut(s)	214, 716
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	3 cut(s)	654, 696, 697
BsaJI	CCNNGG	3 cut(s)	625, 653, 695
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 561
Bse1I	ACTGG	1 cut(s)	723
Bse21I	CCTNAGG	1 cut(s)	752
BseBI	CCWGG	3 cut(s)	182, 439, 706
BseDI	CCNNGG	3 cut(s)	625, 653, 695
BseGI	GGATG	3 cut(s)	12, 127, 594
BseLI	CCNNNNNNNGG	2 cut(s)	309, 561
BseMII	CTCAG	2 cut(s)	404, 743
BseNI	ACTGG	1 cut(s)	723
BseRI	GAGGAG	2 cut(s)	58, 554
BseYI	CCCAGC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	3 cut(s)	82, 653, 696
BslI	CCNNNNNNNGG	2 cut(s)	309, 561
BsmAI	GTCTC	2 cut(s)	65, 105
BsmBI	CGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	695
Bsp143I	GATC	2 cut(s)	524, 614
BspACI	CCGC	4 cut(s)	122, 562, 592, 604
BspCNI	CTCAG	2 cut(s)	405, 744
BspLI	GGNNCC	2 cut(s)	86, 553
BspT107I	GGYRCC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	3 cut(s)	625, 653, 695
BssMI	GATC	2 cut(s)	524, 614
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	3 cut(s)	182, 439, 706
Bst4CI	ACNGT	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	350, 413, 752
BstEII	GGTNACC	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	12, 127, 594
BstKTI	GATC	2 cut(s)	527, 617
BstMAI	GTCTC	2 cut(s)	65, 105
BstMBI	GATC	2 cut(s)	524, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 589, 649
BstNI	CCWGG	3 cut(s)	182, 439, 706
BstPI	GGTNACC	1 cut(s)	291
BstSCI	CCNGG	6 cut(s)	180, 437, 652, 694, 695, 704
BstV2I	GAAGAC	2 cut(s)	214, 716
Bsu36I	CCTNAGG	1 cut(s)	752
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	12, 127, 594
BtsIMutI	CAGTG	2 cut(s)	392, 405
Cfr13I	GGNCC	1 cut(s)	552
Cfr9I	CCCGGG	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	104, 345, 636
CviJI	RGCY	8 cut(s)	60, 125, 172, 327, 354, 442, 475, 700
CviKI_1	RGCY	8 cut(s)	60, 125, 172, 327, 354, 442, 475, 700
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	350, 413, 752
DpnI	GATC	2 cut(s)	526, 616
DpnII	GATC	2 cut(s)	524, 614
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	695
Eco91I	GGTNACC	1 cut(s)	291
EcoO65I	GGTNACC	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	180, 437, 704
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	107, 348, 639
FaiI	YATR	8 cut(s)	105, 205, 346, 463, 479, 530, 637, 778
FatI	CATG	3 cut(s)	103, 344, 635
FauI	CCCGC	2 cut(s)	555, 597
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	3 cut(s)	19, 114, 601
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	6 cut(s)	13, 319, 328, 469, 626, 819
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	446
HapII	CCGG	3 cut(s)	82, 653, 696
Hin1II	CATG	3 cut(s)	107, 348, 639
HinfI	GANTC	2 cut(s)	78, 508
HpaII	CCGG	3 cut(s)	82, 653, 696
HphI	GGTGA	3 cut(s)	285, 360, 740
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	42, 94, 229, 578
Hpy188III	TCNNGA	2 cut(s)	63, 784
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 589, 649
HpyF3I	CTNAG	3 cut(s)	350, 413, 752
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	107, 348, 639
KpnI	GGTACC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	524, 614
LmnI	GCTCC	1 cut(s)	94
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	6 cut(s)	13, 319, 328, 469, 626, 819
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	3 cut(s)	291, 597, 607
MalI	GATC	2 cut(s)	526, 616
MboI	GATC	2 cut(s)	524, 614
MboII	GAAGA	4 cut(s)	192, 214, 503, 721
MluCI	AATT	3 cut(s)	482, 557, 797
MmeI	TCCRAC	3 cut(s)	155, 516, 566
MseI	TTAA	6 cut(s)	323, 434, 448, 569, 715, 815
MspI	CCGG	3 cut(s)	82, 653, 696
MspR9I	CCNGG	6 cut(s)	182, 439, 654, 696, 697, 706
MvaI	CCWGG	3 cut(s)	182, 439, 706
MwoI	GCNNNNNNNGC	3 cut(s)	324, 589, 649
NciI	CCSGG	3 cut(s)	654, 696, 697
NdeII	GATC	2 cut(s)	524, 614
NlaIII	CATG	3 cut(s)	107, 348, 639
NlaIV	GGNNCC	2 cut(s)	86, 553
NmuCI	GTSAC	2 cut(s)	291, 607
PfeI	GAWTC	2 cut(s)	78, 508
PfoI	TCCNGGA	1 cut(s)	704
PkrI	GCNGC	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	180, 437, 704
PspEI	GGTNACC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	3 cut(s)	180, 437, 704
PspN4I	GGNNCC	2 cut(s)	86, 553
PspPI	GGNCC	1 cut(s)	552
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	6 cut(s)	323, 434, 448, 569, 715, 815
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	524, 614
Sau96I	GGNCC	1 cut(s)	552
ScrFI	CCNGG	6 cut(s)	182, 439, 654, 696, 697, 706
SfaNI	GCATC	1 cut(s)	579
SinI	GGWCC	1 cut(s)	552
SmaI	CCCGGG	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	12
Sse9I	AATT	3 cut(s)	482, 557, 797
SsiI	CCGC	4 cut(s)	122, 562, 592, 604
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	6 cut(s)	13, 319, 328, 469, 626, 819
StyD4I	CCNGG	6 cut(s)	180, 437, 652, 694, 695, 704
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	1 cut(s)	77
TasI	AATT	3 cut(s)	482, 557, 797
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	78, 508
Tru1I	TTAA	6 cut(s)	323, 434, 448, 569, 715, 815
Tru9I	TTAA	6 cut(s)	323, 434, 448, 569, 715, 815
TscAI	CASTG	2 cut(s)	399, 405
TseFI	GTSAC	2 cut(s)	291, 607
Tsp45I	GTSAC	2 cut(s)	291, 607
TspDTI	ATGAA	5 cut(s)	192, 237, 293, 373, 624
TspMI	CCCGGG	1 cut(s)	695
TspRI	CASTG	2 cut(s)	399, 405
VpaK11BI	GGWCC	1 cut(s)	552
XmaI	CCCGGG	1 cut(s)	695
XmaJI	CCTAGG	1 cut(s)	625
XspI	CTAG	6 cut(s)	13, 319, 328, 469, 626, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.