Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

25373453 .. 25374699

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGGAGATGGATCTAACACCAAAGTTAGCAGCAGCAGCGTTCGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCCCGCGCTTGGCAAGGCCAAAGTTGGTGCCAGCAAGCTTGTTTTGAAGCCTAGTGAGCACGGAGTAGTTGGGATGGTTTCCCCCAACACATCAGAGGAGGTGGTGTTGAAGCTCAAGAAGGGAGATGTGATTCCGGTACCAGTCGGAGCAGTCTCATGGTGGATCAACAATGGCGACTCATCCGACGACCTTGTTATCGTTTTTTTCGGCGAAACTATAGAAGCCTACACTCCTGGTCAGTTTACTTACTTCATAGCAGGAACTCGAAGTCTTCTTGGAGGTTTCTCAACTGACTTCATTAGCAAGTCATTCAATATCAGGAAAGATGAAGCTGATGAGATCACAAAAAACCAGACAGGGGTTTTCGTAGTGAAGCTAGAACATGGAAAGACCACGCCTAAGCCCAACGAACTCGTCACCAAAAAACTTGTTCATCAACTCACTGTTAGTGCCACTTTGACTGAGAAGGAGTTTCCTTTTCTTAACCAAGCTGGGTTAAGTGCCAATCTCATAAAACTTGAAGCCTATGCAATTTCCTCTCCCATTTACACTACGGATTCTTCGGTTCAAGTGATTTATATCGTTGGAGGAGGTGGTCGGGTCCAAATTGCGGGTCTTAATGGTCAGAGTGCATTGGATGCGGAAGTAACTGCGGGTCACTTGATCGTTGTGCCAAGGTTTTTCACGGTAGCGAAACTTGCCGGGGAAAAAGGAATGGAGTGTTTCTCTGTCATTACAAGTTCCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

277

Amino Acids

29.47

Weight (kDa)

5.86

Isoelectric Point (pI)

24.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	48 - 137	6.7e-07	Cupin
Cupin_1	PF00190	177 - 271	6.4e-12	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	217
AccB1I	GGYRCC	2 cut(s)	107, 217
AccII	CGCG	1 cut(s)	86
AciI	CCGC	5 cut(s)	5, 84, 692, 722, 734
AclWI	GGATC	2 cut(s)	21, 251
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	89, 439, 691
AgsI	TTSAA	5 cut(s)	127, 190, 394, 602, 650
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	5 cut(s)	118, 193, 413, 457, 572
AluI	AGCT	5 cut(s)	118, 193, 413, 457, 572
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	21, 251
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	32, 35, 38
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
Asp718I	GGTACC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	2 cut(s)	784, 826
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	682
BanI	GGYRCC	2 cut(s)	107, 217
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	44, 47, 50
BccI	CCATC	3 cut(s)	4, 47, 148
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	784, 826
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	132, 458
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	3 cut(s)	33, 36, 39
BlsI	GCNGC	3 cut(s)	34, 37, 40
Bme1390I	CCNGG	3 cut(s)	315, 784, 826
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	3 cut(s)	109, 219, 683
BmrFI	CCNGG	3 cut(s)	315, 784, 826
BmsI	GCATC	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	344
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	784, 826
BsaBI	GATNNNNATC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	755, 783
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 439, 691
Bse1I	ACTGG	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	755, 783
BseGI	GGATG	3 cut(s)	159, 260, 724
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	3 cut(s)	89, 439, 691
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	191, 684
BseXI	GCAGC	3 cut(s)	44, 47, 50
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	2 cut(s)	107, 217
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	215, 783, 826
BslI	CCNNNNNNNGG	3 cut(s)	89, 439, 691
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	13, 243, 420, 744
BspACI	CCGC	5 cut(s)	5, 84, 692, 722, 734
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	109, 219, 683
BspPI	GGATC	2 cut(s)	21, 251
BspT107I	GGYRCC	2 cut(s)	107, 217
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	755, 783
BssMI	GATC	4 cut(s)	13, 243, 420, 744
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	526, 769
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	112, 116
BstDEI	CTNAG	2 cut(s)	480, 543
BstF5I	GGATG	3 cut(s)	159, 260, 724
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	4 cut(s)	16, 246, 423, 747
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	13, 243, 420, 744
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 136, 719, 779
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	3 cut(s)	313, 782, 824
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	44, 47, 50
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	159, 260, 724
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	112, 116
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	237, 464
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	480, 543
DpnI	GATC	4 cut(s)	15, 245, 422, 746
DpnII	GATC	4 cut(s)	13, 243, 420, 744
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	2 cut(s)	240, 467
FaiI	YATR	9 cut(s)	71, 73, 238, 299, 335, 465, 593, 609, 660
FatI	CATG	2 cut(s)	236, 463
FauI	CCCGC	3 cut(s)	91, 685, 727
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	33, 36, 39
FokI	GGATG	3 cut(s)	166, 247, 731
Fsp4HI	GCNGC	3 cut(s)	33, 36, 39
FspBI	CTAG	2 cut(s)	132, 458
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	3 cut(s)	33, 36, 39
GsaI	CCCAGC	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	3 cut(s)	215, 783, 826
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	240, 467
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	211, 257, 638
HpaII	CCGG	3 cut(s)	215, 783, 826
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	4 cut(s)	175, 227, 265, 708
Hpy188III	TCNNGA	2 cut(s)	196, 400
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	193, 541
HpyCH4III	ACNGT	2 cut(s)	526, 769
HpyCH4V	TGCA	2 cut(s)	611, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 136, 719, 779
HpyF3I	CTNAG	2 cut(s)	480, 543
Hsp92II	CATG	2 cut(s)	240, 467
HspAI	GCGC	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	221
Kzo9I	GATC	4 cut(s)	13, 243, 420, 744
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	3 cut(s)	44, 47, 50
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	2 cut(s)	132, 458
MaeIII	GTNAC	3 cut(s)	496, 727, 737
MalI	GATC	4 cut(s)	15, 245, 422, 746
MboI	GATC	4 cut(s)	13, 243, 420, 744
MboII	GAAGA	2 cut(s)	344, 633
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	612, 687
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	3 cut(s)	205, 288, 646
MnlI	CCTC	8 cut(s)	40, 53, 169, 172, 353, 628, 662, 665
MseI	TTAA	3 cut(s)	564, 578, 699
MspI	CCGG	3 cut(s)	215, 783, 826
MspR9I	CCNGG	3 cut(s)	315, 784, 826
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	38, 136, 719, 779
NciI	CCSGG	2 cut(s)	784, 826
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	13, 243, 420, 744
NlaIII	CATG	2 cut(s)	240, 467
NlaIV	GGNNCC	3 cut(s)	109, 219, 683
NmuCI	GTSAC	2 cut(s)	496, 737
PfeI	GAWTC	2 cut(s)	211, 638
PkrI	GCNGC	3 cut(s)	34, 37, 40
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	109, 219, 683
PspPI	GGNCC	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	564, 578, 699
SatI	GCNGC	3 cut(s)	33, 36, 39
Sau3AI	GATC	4 cut(s)	13, 243, 420, 744
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	315, 784, 826
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	709
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	612, 687
SsiI	CCGC	5 cut(s)	5, 84, 692, 722, 734
SspMI	CTAG	2 cut(s)	132, 458
StyD4I	CCNGG	3 cut(s)	313, 782, 824
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	2 cut(s)	526, 769
TaqI	TCGA	2 cut(s)	45, 346
TasI	AATT	2 cut(s)	612, 687
TfiI	GAWTC	2 cut(s)	211, 638
Tru1I	TTAA	3 cut(s)	564, 578, 699
Tru9I	TTAA	3 cut(s)	564, 578, 699
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	496, 737
TseI	GCWGC	3 cut(s)	32, 35, 38
Tsp45I	GTSAC	2 cut(s)	496, 737
TspDTI	ATGAA	4 cut(s)	322, 367, 423, 503
TspGWI	ACGGA	2 cut(s)	156, 650
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	682
XspI	CTAG	2 cut(s)	132, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.