Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001971.1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

47061 .. 51219

Gene Structure 4159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001971.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggatctaacaccaaagtcagcggtagcggcgttcgagggagatggtggaggatattacatatggtcatttccggcgcttggggaggccaacgttggcgccggcaagcttgtattgaagcctagtggttttgctcttcctcactatgcagattctgccaaactgggatatgttcttcaaggtgaggatggactagttggaatggtattccccaacacatcagaggaggtagtattgaagctcaagaaaggagacgtgattccggtaccactcggagcagtctcatggtggttcaacaatggcggctcatccaacgaccttgttatcgttttcttgggagaaactacaaaggcttacactcctggtctgtttacttacttcttcatagcaggaactcaaagtcttctcggaggtttctcaactgacttcattagcaagtcattcaatattaccaaagatgaagcagatgaggtcaccaaaaaccagacaggggttttgctagttaagctagaacagggaaagaccatgcctaagcccaacgcactcatcacccacaaacttgttcatcaactcactgtcagtgccactttgactgagaaggagtttccttttcttaaccaggctgggttaagtgccaacctcataaaactagaagcctatgcaatttcctctcccatttacactactgattcttcggttcaagtgatctatgtcgttggaggaggtggtcgggtccaaattgcgggtcttaatggtcagagtgcgttggatgcggaagtaactgcgggtcacttgatcgttgtgcctaggtttttcatggtagcgaaacttgccggggaaaaaggaatggagtgtttctctgtcattacaagttcccgggctgtcctggaagacttaactggcaagacatcagtattgagggcattatcacctgaggtgctacaaatatccctaaatataaatccagagttgctgacaattctccaatcaaagattaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

333

Amino Acids

35.42

Weight (kDa)

5.48

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	2 cut(s)	98, 265
AciI	CCGC	6 cut(s)	23, 29, 303, 743, 773, 785
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	80, 490, 742
AgsI	TTSAA	6 cut(s)	118, 179, 238, 295, 445, 701
AhlI	ACTAGT	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	3 cut(s)	361, 618, 885
AluBI	AGCT	3 cut(s)	109, 241, 508
AluI	AGCT	3 cut(s)	109, 241, 508
Alw26I	GTCTC	2 cut(s)	246, 286
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	1 cut(s)	87
ArsI	GACNNNNNNTTYG	4 cut(s)	478, 510, 730, 762
Asp718I	GGTACC	1 cut(s)	265
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	2 cut(s)	79, 101
AspS9I	GGNCC	1 cut(s)	733
AsuC2I	CCSGG	3 cut(s)	835, 877, 878
AsuHPI	GGTGA	4 cut(s)	194, 466, 541, 921
AvaI	CYCGRG	1 cut(s)	876
AvaII	GGWCC	1 cut(s)	733
AvrII	CCTAGG	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	933
BanI	GGYRCC	2 cut(s)	98, 265
BbsI	GAAGAC	2 cut(s)	395, 897
BccI	CCATC	2 cut(s)	38, 182
BciT130I	CCWGG	3 cut(s)	363, 620, 887
BcnI	CCSGG	3 cut(s)	835, 877, 878
BcoDI	GTCTC	2 cut(s)	246, 286
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	7 cut(s)	123, 194, 500, 509, 650, 807, 1000
BfoI	RGCGCY	2 cut(s)	80, 102
BisI	GCNGC	2 cut(s)	30, 304
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	2 cut(s)	31, 305
Bme1390I	CCNGG	6 cut(s)	363, 620, 835, 877, 878, 887
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	876
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	733
BmiI	GGNNCC	3 cut(s)	100, 267, 734
BmrFI	CCNGG	6 cut(s)	363, 620, 835, 877, 878, 887
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	760
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	395, 897
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	3 cut(s)	835, 877, 878
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	806, 834, 876
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 490, 742
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	168, 904
Bse21I	CCTNAGG	1 cut(s)	933
BseBI	CCWGG	3 cut(s)	363, 620, 887
BseDI	CCNNGG	3 cut(s)	806, 834, 876
BseGI	GGATG	3 cut(s)	193, 308, 775
BseLI	CCNNNNNNNGG	3 cut(s)	80, 490, 742
BseMII	CTCAG	2 cut(s)	585, 924
BseNI	ACTGG	2 cut(s)	168, 904
BseRI	GAGGAG	2 cut(s)	239, 735
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	98, 265
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	5 cut(s)	74, 102, 263, 834, 877
BslI	CCNNNNNNNGG	3 cut(s)	80, 490, 742
BsmAI	GTCTC	2 cut(s)	246, 286
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	876
Bsp143I	GATC	3 cut(s)	4, 705, 795
BspACI	CCGC	6 cut(s)	23, 29, 303, 743, 773, 785
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	586, 925
BspLI	GGNNCC	3 cut(s)	100, 267, 734
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	2 cut(s)	98, 265
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	168, 904
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	806, 834, 876
BssMI	GATC	3 cut(s)	4, 705, 795
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	806
Bst2UI	CCWGG	3 cut(s)	363, 620, 887
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	103, 107
BstDEI	CTNAG	3 cut(s)	531, 594, 933
BstEII	GGTNACC	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	193, 308, 775
BstH2I	RGCGCY	2 cut(s)	80, 102
BstHHI	GCGC	2 cut(s)	79, 101
BstKTI	GATC	3 cut(s)	7, 708, 798
BstMAI	GTCTC	2 cut(s)	246, 286
BstMBI	GATC	3 cut(s)	4, 705, 795
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 155, 505, 770, 830
BstNI	CCWGG	3 cut(s)	363, 620, 887
BstPI	GGTNACC	1 cut(s)	472
BstSCI	CCNGG	6 cut(s)	361, 618, 833, 875, 876, 885
BstV2I	GAAGAC	2 cut(s)	395, 897
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	193, 308, 775
BtsIMutI	CAGTG	2 cut(s)	573, 586
Cac8I	GCNNGC	2 cut(s)	103, 107
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	2 cut(s)	79, 101
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	733
Cfr9I	CCCGGG	1 cut(s)	876
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	3 cut(s)	285, 526, 817
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	3 cut(s)	531, 594, 933
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	3 cut(s)	6, 707, 797
DpnII	GATC	3 cut(s)	4, 705, 795
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	733
Eco81I	CCTNAGG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
EcoRII	CCWGG	3 cut(s)	361, 618, 885
EcoT14I	CCWWGG	1 cut(s)	806
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	806
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	3 cut(s)	288, 529, 820
FatI	CATG	3 cut(s)	284, 525, 816
FauI	CCCGC	2 cut(s)	736, 778
FauNDI	CATATG	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	30, 304
FokI	GGATG	3 cut(s)	200, 295, 782
Fsp4HI	GCNGC	2 cut(s)	30, 304
FspBI	CTAG	7 cut(s)	123, 194, 500, 509, 650, 807, 1000
GlaI	GCGC	2 cut(s)	78, 100
GluI	GCNGC	2 cut(s)	30, 304
GsaI	CCCAGC	1 cut(s)	627
HaeII	RGCGCY	2 cut(s)	80, 102
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	5 cut(s)	74, 102, 263, 834, 877
HhaI	GCGC	2 cut(s)	79, 101
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	288, 529, 820
Hin6I	GCGC	2 cut(s)	77, 99
HinP1I	GCGC	2 cut(s)	77, 99
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	152, 259, 689
HpaII	CCGG	5 cut(s)	74, 102, 263, 834, 877
HphI	GGTGA	4 cut(s)	194, 466, 541, 921
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	4 cut(s)	223, 275, 410, 759
Hpy188III	TCNNGA	2 cut(s)	244, 965
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	2 cut(s)	93, 255
HpyCH4V	TGCA	2 cut(s)	149, 662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 155, 505, 770, 830
HpyF3I	CTNAG	3 cut(s)	531, 594, 933
HpySE526I	ACGT	2 cut(s)	93, 255
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	288, 529, 820
HspAI	GCGC	2 cut(s)	77, 99
KasI	GGCGCC	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	4, 705, 795
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	275
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	7 cut(s)	123, 194, 500, 509, 650, 807, 1000
MaeII	ACGT	2 cut(s)	93, 255
MaeIII	GTNAC	3 cut(s)	472, 778, 788
MalI	GATC	3 cut(s)	6, 707, 797
MboI	GATC	3 cut(s)	4, 705, 795
MboII	GAAGA	6 cut(s)	128, 167, 373, 395, 684, 902
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	663, 738, 978
Mly113I	GGCGCC	1 cut(s)	99
MmeI	TCCRAC	4 cut(s)	178, 336, 697, 747
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	6 cut(s)	504, 615, 629, 750, 896, 996
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	74, 102, 263, 834, 877
MspR9I	CCNGG	6 cut(s)	363, 620, 835, 877, 878, 887
MvaI	CCWGG	3 cut(s)	363, 620, 887
MwoI	GCNNNNNNNGC	5 cut(s)	29, 155, 505, 770, 830
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	99
NciI	CCSGG	3 cut(s)	835, 877, 878
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	3 cut(s)	4, 705, 795
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	288, 529, 820
NlaIV	GGNNCC	3 cut(s)	100, 267, 734
NmuCI	GTSAC	2 cut(s)	472, 788
PciSI	GCTCTTC	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	152, 259, 689
PfoI	TCCNGGA	1 cut(s)	885
PkrI	GCNGC	2 cut(s)	31, 305
PluTI	GGCGCC	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	361, 618, 885
PspEI	GGTNACC	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	3 cut(s)	361, 618, 885
PspN4I	GGNNCC	3 cut(s)	100, 267, 734
PspPI	GGNCC	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	504, 615, 629, 750, 896, 996
SatI	GCNGC	2 cut(s)	30, 304
Sau3AI	GATC	3 cut(s)	4, 705, 795
Sau96I	GGNCC	1 cut(s)	733
ScrFI	CCNGG	6 cut(s)	363, 620, 835, 877, 878, 887
SfaNI	GCATC	1 cut(s)	760
SfoI	GGCGCC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	733
SmaI	CCCGGG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	193
Sse9I	AATT	3 cut(s)	663, 738, 978
SsiI	CCGC	6 cut(s)	23, 29, 303, 743, 773, 785
SspDI	GGCGCC	1 cut(s)	98
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	7 cut(s)	123, 194, 500, 509, 650, 807, 1000
StyD4I	CCNGG	6 cut(s)	361, 618, 833, 875, 876, 885
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	2 cut(s)	96, 258
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	663, 738, 978
TauI	GCSGC	2 cut(s)	32, 306
TfiI	GAWTC	3 cut(s)	152, 259, 689
Tru1I	TTAA	6 cut(s)	504, 615, 629, 750, 896, 996
Tru9I	TTAA	6 cut(s)	504, 615, 629, 750, 896, 996
TscAI	CASTG	2 cut(s)	580, 586
TseFI	GTSAC	2 cut(s)	472, 788
Tsp45I	GTSAC	2 cut(s)	472, 788
TspDTI	ATGAA	5 cut(s)	373, 418, 474, 554, 805
TspMI	CCCGGG	1 cut(s)	876
TspRI	CASTG	2 cut(s)	580, 586
VpaK11BI	GGWCC	1 cut(s)	733
XmaI	CCCGGG	1 cut(s)	876
XmaJI	CCTAGG	1 cut(s)	806
XspI	CTAG	7 cut(s)	123, 194, 500, 509, 650, 807, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.