Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 664

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 482 bp

atctaacaccaaagttagcagcagtagagttcgagggagatggtggaggatatcacacatggtcagctccagcactcggcaaggccaaagttggtgccggcaagcttgttttaaagctgagtggttttgctcttcctcactatgcagattctgccaaactggggtatgttgttcaaggtgaggatggagtaattgggatggttttacccaacaaatcagaggtggtggtgttgaagcttaagaaaggagatgtgattccggtaccagtcagggcagtctcctgttggttcaacaatggcgactcacccgatgaccttgttatcattttcttgggcgatactacaaaggcctacactcctggtcggtttacttacttcttcatggcaggaactcaaagtcttctcggaggtttctcgattgacctcattagcaagtcattcaatatcagcaaagatgaagctgatgaggtcaccaaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

159

Amino Acids

16.89

Weight (kDa)

6.13

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	94, 261
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	76, 161
AflII	CTTAAG	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	175, 234, 291, 441
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	5 cut(s)	67, 105, 117, 237, 460
AluI	AGCT	5 cut(s)	67, 105, 117, 237, 460
Alw26I	GTCTC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	83, 347
ApeKI	GCWGC	1 cut(s)	19
Asp718I	GGTACC	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	190, 296, 462
BanI	GGYRCC	2 cut(s)	94, 261
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	34, 178, 192
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	238
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	96, 263
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 161
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	164, 265
BseBI	CCWGG	1 cut(s)	359
BseGI	GGATG	2 cut(s)	189, 203
BseLI	CCNNNNNNNGG	2 cut(s)	76, 161
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	2 cut(s)	164, 265
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	2 cut(s)	85, 349
BshNI	GGYRCC	2 cut(s)	94, 261
BsiSI	CCGG	2 cut(s)	98, 259
BslI	CCNNNNNNNGG	2 cut(s)	76, 161
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	85, 349
BspANI	GGCC	2 cut(s)	85, 349
BspCNI	CTCAG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	96, 263
BspQI	GCTCTTC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	94, 261
BspTI	CTTAAG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	164, 265
BssAI	RCCGGY	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	99, 103
BstDEI	CTNAG	1 cut(s)	118
BstEII	GGTNACC	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	189, 203
BstMAI	GTCTC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	359
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	85, 349
BtsCI	GGATG	2 cut(s)	189, 203
Cac8I	GCNNGC	2 cut(s)	99, 103
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	59, 381
CviJI	RGCY	7 cut(s)	67, 85, 105, 117, 237, 349, 460
CviKI_1	RGCY	7 cut(s)	67, 85, 105, 117, 237, 349, 460
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	118
DraI	TTTAAA	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	468
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	2 cut(s)	62, 384
FaiI	YATR	4 cut(s)	60, 143, 167, 382
FatI	CATG	2 cut(s)	58, 380
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	196, 210
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	85, 349
HapII	CCGG	2 cut(s)	98, 259
Hin1II	CATG	2 cut(s)	62, 384
HindIII	AAGCTT	2 cut(s)	103, 235
HinfI	GANTC	3 cut(s)	148, 255, 301
HpaII	CCGG	2 cut(s)	98, 259
HphI	GGTGA	3 cut(s)	190, 296, 462
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	2 cut(s)	219, 406
Hpy188III	TCNNGA	1 cut(s)	414
Hpy8I	GTNNAC	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	62, 384
KpnI	GGTACC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	468
MboII	GAAGA	3 cut(s)	124, 369, 391
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	27, 40, 146, 174, 213, 400, 433, 459
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	2 cut(s)	112, 239
MspCI	CTTAAG	1 cut(s)	238
MspI	CCGG	2 cut(s)	98, 259
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	151
NaeI	GCCGGC	1 cut(s)	99
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	62, 384
NlaIV	GGNNCC	2 cut(s)	96, 263
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	148, 255
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	96, 263
PstNI	CAGNNNCTG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	112, 239
SatI	GCNGC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	1 cut(s)	191
SseBI	AGGCCT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	357
TaqI	TCGA	2 cut(s)	32, 415
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	148, 255
Tru1I	TTAA	2 cut(s)	112, 239
Tru9I	TTAA	2 cut(s)	112, 239
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	2 cut(s)	369, 470
Vha464I	CTTAAG	1 cut(s)	238
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.