Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

29874746 .. 29877673

Gene Structure 2928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1232200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACTTAACACCCGAGTCAGCTCAAAAGTTGTTTGAAGGAGACGGAGGAGCATATTACATTTGGTCGAGTTCAGATGCTCCGGTGCTTGCTGAGGCCAAGGTTGGTGCAGGCAAGCTTGTTCTTCAACCTCATGGCTTTGCACTTCCTCACTATGCAGATTCCTCCAAACTGGGATATGTTCTTCAAGGTGATGATGGATTAGTAGGAATGGTATTCCCTAACACATCAGAGGAGGTGGTGGTTAAGGTTAAGAAAGGAGATGTGATACCAGTACCAGTTGGAGCAGTCTCATGGTGGTTCAACAATGGAGATCGCTCTGAGGAGCTTGTTGTTGTTTTCTTGGGTGAAACTGCCGGAGCTCACATTCCCGGCCAATTTACGTATTTTTTGATTGCCGGAACCCTAAGTCTACTTGCAGGTTTCTCAACTGAATTTGTCAGCAAGTCCTTCAACATCACCGAGGACGAAGCTGATGACATCACCGAAAGCCAGACTGGGGTTTTGATCATCAAGCTAGGTCAAGATGAAAAGACCAAAATGCCCCTTCCCAATCAGAAACTCACCCACACACATGTTCACAACATTACTAGTAGTAAAACTACGGCCACATTGACTGAGAAGGAATTCCCTCTTCTTAAAGAAGCTGGGTTAAGTGCGAACCTCACGAAACTCGAGGCCGACGCAATTAGCTCTCCAATTTACGCACCTGATTCCACAGTCCAGGTGATTTATGTTGCTCGAGGGAGTGGCCGGATACAGATTGTGGGTGTTAACGGTCAATGTTTGTTGGACGCAGAGGTAACTGCCGGCCAACTGCTTGTGGTACCAACGTTCTTCATGGTTGCTAAACTTGCAGGACAAAATGGGTTGGAATGTTTCACTGTCATCACCAGTTCTCAGCCTGTCCTGGAAGACTTAGCTGGAAAGACGTCAGCACTGGGAGCATTATCGCCGGAGGTACTACAAATAGCCCTTAATATAAGTCCAGGGCTGGAACGACTTCTCAAGTCAAAGATTAGAAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

344

Amino Acids

36.47

Weight (kDa)

4.99

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	8 - 157	2e-19	Cupin
Cupin_1	PF00190	201 - 330	5.9e-17	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	935
Acc36I	ACCTGC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	826
AccB1I	GGYRCC	1 cut(s)	826
AccI	GTMKAC	1 cut(s)	412
AclI	AACGTT	1 cut(s)	833
AcoI	YGGCCR	4 cut(s)	373, 606, 751, 811
AcsI	RAATTY	2 cut(s)	434, 626
AcyI	GRCGYC	1 cut(s)	932
AfaI	GTAC	3 cut(s)	276, 828, 963
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	5 cut(s)	38, 128, 188, 304, 454
AhlI	ACTAGT	1 cut(s)	590
AjnI	CCWGG	3 cut(s)	723, 909, 988
AluBI	AGCT	9 cut(s)	23, 118, 328, 362, 473, 517, 647, 693, 923
AluI	AGCT	9 cut(s)	23, 118, 328, 362, 473, 517, 647, 693, 923
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	36, 295
Ama87I	CYCGRG	3 cut(s)	14, 674, 741
AoxI	GGCC	6 cut(s)	96, 373, 606, 678, 751, 811
ApoI	RAATTY	2 cut(s)	434, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	487, 519
Asp700I	GAANNNNTTC	2 cut(s)	626, 1002
Asp718I	GGTACC	1 cut(s)	826
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	7 cut(s)	203, 359, 451, 475, 556, 739, 883
AvaI	CYCGRG	3 cut(s)	14, 674, 741
BaeI	ACNNNNGTAYC	2 cut(s)	818, 851
BanI	GGYRCC	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	364
BbvCI	CCTCAGC	1 cut(s)	93
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	621
BciT130I	CCWGG	3 cut(s)	725, 911, 990
BciVI	GTATCC	1 cut(s)	750
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	36, 295
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	2 cut(s)	518, 591
BfuAI	ACCTGC	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	750
Bme1390I	CCNGG	4 cut(s)	372, 725, 911, 990
BmeT110I	CYCGRG	3 cut(s)	14, 674, 741
BmiI	GGNNCC	2 cut(s)	403, 828
BmrFI	CCNGG	4 cut(s)	372, 725, 911, 990
BmrI	ACTGGG	3 cut(s)	182, 507, 950
BmsI	GCATC	1 cut(s)	67
BmuI	ACTGGG	3 cut(s)	182, 507, 950
BpiI	GAAGAC	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	992
BpuMI	CCSGG	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	932
BsaJI	CCNNGG	3 cut(s)	99, 462, 989
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse118I	RCCGGY	1 cut(s)	809
Bse1I	ACTGG	6 cut(s)	177, 272, 278, 502, 894, 945
BseBI	CCWGG	3 cut(s)	725, 911, 990
BseDI	CCNNGG	3 cut(s)	99, 462, 989
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	4 cut(s)	84, 312, 609, 914
BseNI	ACTGG	6 cut(s)	177, 272, 278, 502, 894, 945
BseRI	GAGGAG	3 cut(s)	63, 248, 338
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	6 cut(s)	98, 375, 608, 680, 753, 813
BshNI	GGYRCC	1 cut(s)	826
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	3 cut(s)	14, 674, 741
BsiSI	CCGG	7 cut(s)	83, 357, 372, 399, 754, 810, 956
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	2 cut(s)	36, 295
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	6 cut(s)	98, 375, 608, 680, 753, 813
BsoBI	CYCGRG	3 cut(s)	14, 674, 741
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	313, 507
BspANI	GGCC	6 cut(s)	98, 375, 608, 680, 753, 813
BspCNI	CTCAG	4 cut(s)	85, 313, 610, 913
BspLI	GGNNCC	2 cut(s)	403, 828
BspMI	ACCTGC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	826
BsrFI	RCCGGY	1 cut(s)	809
BsrI	ACTGG	6 cut(s)	177, 272, 278, 502, 894, 945
BssAI	RCCGGY	1 cut(s)	809
BssECI	CCNNGG	3 cut(s)	99, 462, 989
BssMI	GATC	2 cut(s)	313, 507
BssNI	GRCGYC	1 cut(s)	932
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	3 cut(s)	725, 911, 990
Bst4CI	ACNGT	3 cut(s)	721, 779, 886
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	932
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	90, 112, 116, 811
BstDEI	CTNAG	6 cut(s)	93, 321, 407, 618, 900, 919
BstKTI	GATC	2 cut(s)	316, 510
BstMAI	GTCTC	2 cut(s)	36, 295
BstMBI	GATC	2 cut(s)	313, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	854, 944
BstNI	CCWGG	3 cut(s)	725, 911, 990
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	370, 723, 909, 988
BstSNI	TACGTA	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	921
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	6 cut(s)	98, 375, 608, 680, 753, 813
BtsIMutI	CAGTG	2 cut(s)	882, 938
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	90, 112, 116, 811
Cfr10I	RCCGGY	1 cut(s)	809
CseI	GACGC	2 cut(s)	692, 803
Csp6I	GTAC	3 cut(s)	275, 827, 962
CviAII	CATG	4 cut(s)	134, 294, 575, 841
CviQI	GTAC	3 cut(s)	275, 827, 962
DdeI	CTNAG	6 cut(s)	93, 321, 407, 618, 900, 919
DpnI	GATC	2 cut(s)	315, 509
DpnII	GATC	2 cut(s)	313, 507
EaeI	YGGCCR	4 cut(s)	373, 606, 751, 811
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	362
Eco105I	TACGTA	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	362
Eco88I	CYCGRG	3 cut(s)	14, 674, 741
EcoICRI	GAGCTC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	723, 909, 988
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	4 cut(s)	137, 297, 578, 844
FaiI	YATR	9 cut(s)	55, 135, 156, 180, 295, 576, 735, 842, 983
FatI	CATG	4 cut(s)	133, 293, 574, 840
FbaI	TGATCA	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	364
FspBI	CTAG	2 cut(s)	518, 591
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	6 cut(s)	98, 375, 608, 680, 753, 813
HapII	CCGG	7 cut(s)	83, 357, 372, 399, 754, 810, 956
HgaI	GACGC	2 cut(s)	692, 803
Hin1I	GRCGYC	1 cut(s)	932
Hin1II	CATG	4 cut(s)	137, 297, 578, 844
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	17, 161, 713
HpaI	GTTAAC	1 cut(s)	775
HpaII	CCGG	7 cut(s)	83, 357, 372, 399, 754, 810, 956
HphI	GGTGA	7 cut(s)	203, 359, 451, 475, 556, 739, 883
Hpy166II	GTNNAC	3 cut(s)	413, 580, 775
Hpy188I	TCNGA	4 cut(s)	76, 232, 322, 558
Hpy188III	TCNNGA	2 cut(s)	524, 667
Hpy8I	GTNNAC	3 cut(s)	413, 580, 775
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	4 cut(s)	32, 460, 557, 616
HpyCH4III	ACNGT	3 cut(s)	721, 779, 886
HpyCH4IV	ACGT	3 cut(s)	383, 833, 932
HpyCH4V	TGCA	5 cut(s)	110, 143, 158, 419, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	854, 944
HpyF3I	CTNAG	6 cut(s)	93, 321, 407, 618, 900, 919
HpySE526I	ACGT	3 cut(s)	383, 833, 932
Hsp92I	GRCGYC	1 cut(s)	932
Hsp92II	CATG	4 cut(s)	137, 297, 578, 844
KpnI	GGTACC	1 cut(s)	830
KroI	GCCGGC	1 cut(s)	809
KroNI	GCCGGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	507
KspAI	GTTAAC	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	313, 507
LmnI	GCTCC	6 cut(s)	50, 85, 284, 325, 359, 944
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	518, 591
MaeII	ACGT	3 cut(s)	383, 833, 932
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	2 cut(s)	315, 509
MboI	GATC	2 cut(s)	313, 507
MboII	GAAGA	5 cut(s)	116, 176, 626, 829, 926
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	5 cut(s)	377, 434, 626, 687, 699
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	3 cut(s)	262, 771, 852
MroNI	GCCGGC	1 cut(s)	809
MroXI	GAANNNNTTC	2 cut(s)	626, 1002
MseI	TTAA	7 cut(s)	8, 246, 252, 639, 653, 774, 978
MslI	CAYNNNNRTG	1 cut(s)	573
MspI	CCGG	7 cut(s)	83, 357, 372, 399, 754, 810, 956
MspR9I	CCNGG	4 cut(s)	372, 725, 911, 990
MvaI	CCWGG	3 cut(s)	725, 911, 990
MwoI	GCNNNNNNNGC	2 cut(s)	854, 944
NaeI	GCCGGC	1 cut(s)	811
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	313, 507
NgoMIV	GCCGGC	1 cut(s)	809
NlaIII	CATG	4 cut(s)	137, 297, 578, 844
NlaIV	GGNNCC	2 cut(s)	403, 828
NspI	RCATGY	1 cut(s)	578
PaeR7I	CTCGAG	2 cut(s)	674, 741
PciI	ACATGT	1 cut(s)	574
PdiI	GCCGGC	1 cut(s)	811
PdmI	GAANNNNTTC	2 cut(s)	626, 1002
PfeI	GAWTC	2 cut(s)	161, 713
PfoI	TCCNGGA	1 cut(s)	909
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	384
PscI	ACATGT	1 cut(s)	574
Psp124BI	GAGCTC	1 cut(s)	364
Psp1406I	AACGTT	1 cut(s)	833
Psp6I	CCWGG	3 cut(s)	723, 909, 988
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	3 cut(s)	723, 909, 988
PspN4I	GGNNCC	2 cut(s)	403, 828
PspXI	VCTCGAGB	2 cut(s)	674, 741
RsaI	GTAC	3 cut(s)	276, 828, 963
RsaNI	GTAC	3 cut(s)	275, 827, 962
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	7 cut(s)	8, 246, 252, 639, 653, 774, 978
Sau3AI	GATC	2 cut(s)	313, 507
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	4 cut(s)	372, 725, 911, 990
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	67
Sfr274I	CTCGAG	2 cut(s)	674, 741
SlaI	CTCGAG	2 cut(s)	674, 741
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	3 cut(s)	674, 741, 1007
SmoI	CTYRAG	3 cut(s)	674, 741, 1007
SnaBI	TACGTA	1 cut(s)	384
SpeI	ACTAGT	1 cut(s)	590
Sse9I	AATT	5 cut(s)	377, 434, 626, 687, 699
SspMI	CTAG	2 cut(s)	518, 591
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	4 cut(s)	370, 723, 909, 988
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	721, 779, 886
TaiI	ACGT	3 cut(s)	386, 836, 935
TaqI	TCGA	3 cut(s)	68, 675, 742
TasI	AATT	5 cut(s)	377, 434, 626, 687, 699
TfiI	GAWTC	2 cut(s)	161, 713
Tru1I	TTAA	7 cut(s)	8, 246, 252, 639, 653, 774, 978
Tru9I	TTAA	7 cut(s)	8, 246, 252, 639, 653, 774, 978
TscAI	CASTG	2 cut(s)	889, 945
TspDTI	ATGAA	2 cut(s)	543, 829
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	889, 945
XapI	RAATTY	2 cut(s)	434, 626
XceI	RCATGY	1 cut(s)	578
XhoI	CTCGAG	2 cut(s)	674, 741
XmiI	GTMKAC	1 cut(s)	412
XmnI	GAANNNNTTC	2 cut(s)	626, 1002
XspI	CTAG	2 cut(s)	518, 591
ZraI	GACGTC	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.