Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

25442551 .. 25444762

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002099

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATCTTACACCAATGTCAGCGACAGCGGCGTTTGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCCGGCGCTTGGGGAGGCCAAAGTTGGCGCTGGCAAGCTTGTATTGAAGCCTAGAGGTTTTGCTCTTCCTCACTATGCAGACTCTGCCAAACTGGGATATGTTCTTCAAGGTGAGGATGGATTAGTCGGAATGGTATTCCCCAACACATCAGAGGAGGTGGTATTGAAGCTTAAGAAAGGAGACGTGATTCCGGTACCACTCGGAGCAGTCTCATGGTGGTTCAACAATGGCAGCTCATCCAACGACCTTGTTATCCTTTTCTTGGGAGAAACTACAAAGGCTTACACTCCTGGTCTGTTTACTTACTTCTTCATAGCAGGAACTCAAAGTCTTCTCGGAAGTTTCTCGACTGACTTCATTAGCAAGTCATTCAATATTACGAAAGATGAAGCAGATAAGGTCACCAAAAACCAGACAGGGGTTTTGCTAGTTAAGCTTGAACAGGGAAAGACCATGCCTAAGCCCAACGCACTCATCACCCACAAACTTGTTCATCAACTCACTGTTAGTGCCACTTTGACTGAGAAGGAGTTTCCTTTTCTTAACCAAGCTGGGCTGAGTGCCAACCTCATAAAACTTGAACCTCATGCAATTTCTTCTCCCATTTACACTACCGATTCTACGGTTCAAGTGATCTATGTCGTTGGAGGAGGCGGTTGGGTCCAAATTGCGGGTCTTAATGGTCAGAGTGTGTTGGATGCGGAAGTAACTGCGGGTCAATTGATCGTTGTGCCTAGGTTTTTCATGGTGGCGAAACTTGCCGGGGAAAATGGAATGGACTGTTTCTCTGTCATTACAAGTTCCCGGGCTGTCCTGGAAGACTTAACTGGCAAGACATCAGTATTGAGGGCATTATCACCTGAGGTGCTACAAATATCCCTCAATATAGATCCAGAGTTGCAGACTTTTCTCCAATCAAAGATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

334

Amino Acids

35.67

Weight (kDa)

5.46

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	23 - 154	4.2e-15	Cupin
Cupin_1	PF00190	193 - 323	3.3e-20	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	5 cut(s)	29, 726, 743, 773, 785
AclWI	GGATC	2 cut(s)	12, 956
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	4 cut(s)	80, 334, 490, 742
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	8 cut(s)	118, 179, 238, 295, 445, 512, 653, 701
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	361, 885
AluBI	AGCT	5 cut(s)	109, 241, 306, 508, 623
AluI	AGCT	5 cut(s)	109, 241, 306, 508, 623
Alw26I	GTCTC	2 cut(s)	246, 286
AlwI	GGATC	2 cut(s)	12, 956
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	4 cut(s)	478, 510, 730, 762
AseI	ATTAAT	1 cut(s)	996
Asp718I	GGTACC	1 cut(s)	265
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	2 cut(s)	79, 101
AspS9I	GGNCC	1 cut(s)	733
AsuC2I	CCSGG	3 cut(s)	835, 877, 878
AsuHPI	GGTGA	4 cut(s)	194, 466, 541, 921
AvaI	CYCGRG	1 cut(s)	876
AvaII	GGWCC	1 cut(s)	733
AvrII	CCTAGG	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	933
BanI	GGYRCC	1 cut(s)	265
BbsI	GAAGAC	2 cut(s)	395, 897
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	2 cut(s)	38, 182
BciT130I	CCWGG	2 cut(s)	363, 887
BcnI	CCSGG	3 cut(s)	835, 877, 878
BcoDI	GTCTC	2 cut(s)	246, 286
BfaI	CTAG	3 cut(s)	123, 500, 807
BfoI	RGCGCY	2 cut(s)	80, 102
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	30, 304
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	2 cut(s)	31, 305
Bme1390I	CCNGG	5 cut(s)	363, 835, 877, 878, 887
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	876
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	733
BmiI	GGNNCC	2 cut(s)	267, 734
BmrFI	CCNGG	5 cut(s)	363, 835, 877, 878, 887
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	760
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	395, 897
Bpu10I	CCTNAGC	1 cut(s)	531
BpuMI	CCSGG	3 cut(s)	835, 877, 878
BsaJI	CCNNGG	3 cut(s)	806, 834, 876
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 334, 490, 742
Bse1I	ACTGG	2 cut(s)	168, 904
Bse21I	CCTNAGG	1 cut(s)	933
BseBI	CCWGG	2 cut(s)	363, 887
BseDI	CCNNGG	3 cut(s)	806, 834, 876
BseGI	GGATG	3 cut(s)	193, 308, 775
BseLI	CCNNNNNNNGG	4 cut(s)	80, 334, 490, 742
BseMII	CTCAG	3 cut(s)	585, 620, 924
BseNI	ACTGG	2 cut(s)	168, 904
BseRI	GAGGAG	2 cut(s)	239, 735
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	4 cut(s)	74, 263, 834, 877
BslI	CCNNNNNNNGG	4 cut(s)	80, 334, 490, 742
BsmAI	GTCTC	2 cut(s)	246, 286
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	4, 705, 795, 961
BspACI	CCGC	5 cut(s)	29, 726, 743, 773, 785
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	3 cut(s)	586, 621, 925
BspLI	GGNNCC	2 cut(s)	267, 734
BspPI	GGATC	2 cut(s)	12, 956
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	168, 904
BssECI	CCNNGG	3 cut(s)	806, 834, 876
BssMI	GATC	4 cut(s)	4, 705, 795, 961
BssT1I	CCWWGG	1 cut(s)	806
Bst2UI	CCWGG	2 cut(s)	363, 887
Bst4CI	ACNGT	3 cut(s)	577, 697, 854
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	103, 107
BstDEI	CTNAG	4 cut(s)	531, 594, 629, 933
BstEII	GGTNACC	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	193, 308, 775
BstH2I	RGCGCY	2 cut(s)	80, 102
BstHHI	GCGC	2 cut(s)	79, 101
BstKTI	GATC	4 cut(s)	7, 708, 798, 964
BstMAI	GTCTC	2 cut(s)	246, 286
BstMBI	GATC	4 cut(s)	4, 705, 795, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 155, 505, 830
BstNI	CCWGG	2 cut(s)	363, 887
BstPI	GGTNACC	1 cut(s)	472
BstSCI	CCNGG	5 cut(s)	361, 833, 875, 876, 885
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	2 cut(s)	395, 897
BstX2I	RGATCY	2 cut(s)	4, 961
BstYI	RGATCY	2 cut(s)	4, 961
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	193, 308, 775
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	103, 107
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	2 cut(s)	79, 101
Cfr13I	GGNCC	1 cut(s)	733
Cfr9I	CCCGGG	1 cut(s)	876
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	4 cut(s)	285, 526, 659, 817
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	4 cut(s)	531, 594, 629, 933
DpnI	GATC	4 cut(s)	6, 707, 797, 963
DpnII	GATC	4 cut(s)	4, 705, 795, 961
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	733
Eco81I	CCTNAGG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	361, 885
EcoT14I	CCWWGG	1 cut(s)	806
ErhI	CCWWGG	1 cut(s)	806
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	4 cut(s)	288, 529, 662, 820
FatI	CATG	4 cut(s)	284, 525, 658, 816
FauI	CCCGC	2 cut(s)	736, 778
FauNDI	CATATG	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	30, 304
FokI	GGATG	3 cut(s)	200, 295, 782
Fsp4HI	GCNGC	2 cut(s)	30, 304
FspBI	CTAG	3 cut(s)	123, 500, 807
GlaI	GCGC	2 cut(s)	78, 100
GluI	GCNGC	2 cut(s)	30, 304
GsaI	CCCAGC	1 cut(s)	627
HaeII	RGCGCY	2 cut(s)	80, 102
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	4 cut(s)	74, 263, 834, 877
HhaI	GCGC	2 cut(s)	79, 101
Hin1II	CATG	4 cut(s)	288, 529, 662, 820
Hin6I	GCGC	2 cut(s)	77, 99
HinP1I	GCGC	2 cut(s)	77, 99
HindIII	AAGCTT	3 cut(s)	107, 239, 506
HinfI	GANTC	3 cut(s)	152, 259, 689
HpaII	CCGG	4 cut(s)	74, 263, 834, 877
HphI	GGTGA	4 cut(s)	194, 466, 541, 921
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	5 cut(s)	200, 223, 275, 410, 759
Hpy188III	TCNNGA	2 cut(s)	418, 965
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	3 cut(s)	577, 697, 854
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	149, 662, 973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 155, 505, 830
HpyF3I	CTNAG	4 cut(s)	531, 594, 629, 933
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	288, 529, 662, 820
HspAI	GCGC	2 cut(s)	77, 99
KpnI	GGTACC	1 cut(s)	269
Kzo9I	GATC	4 cut(s)	4, 705, 795, 961
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	3 cut(s)	123, 500, 807
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	472, 778
MalI	GATC	4 cut(s)	6, 707, 797, 963
MboI	GATC	4 cut(s)	4, 705, 795, 961
MboII	GAAGA	6 cut(s)	128, 167, 373, 395, 660, 902
MfeI	CAATTG	1 cut(s)	791
MflI	RGATCY	2 cut(s)	4, 961
MluCI	AATT	4 cut(s)	663, 738, 791, 997
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	4 cut(s)	178, 336, 697, 747
MseI	TTAA	6 cut(s)	243, 504, 615, 750, 896, 996
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	4 cut(s)	74, 263, 834, 877
MspR9I	CCNGG	5 cut(s)	363, 835, 877, 878, 887
MunI	CAATTG	1 cut(s)	791
MvaI	CCWGG	2 cut(s)	363, 887
MwoI	GCNNNNNNNGC	4 cut(s)	29, 155, 505, 830
NciI	CCSGG	3 cut(s)	835, 877, 878
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	4 cut(s)	4, 705, 795, 961
NlaIII	CATG	4 cut(s)	288, 529, 662, 820
NlaIV	GGNNCC	2 cut(s)	267, 734
NmuCI	GTSAC	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	259, 689
PfoI	TCCNGGA	1 cut(s)	885
PkrI	GCNGC	2 cut(s)	31, 305
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	361, 885
PspEI	GGTNACC	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	361, 885
PspN4I	GGNNCC	2 cut(s)	267, 734
PspPI	GGNCC	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	4, 961
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	243, 504, 615, 750, 896, 996
SatI	GCNGC	2 cut(s)	30, 304
Sau3AI	GATC	4 cut(s)	4, 705, 795, 961
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	5 cut(s)	363, 835, 877, 878, 887
SfaNI	GCATC	1 cut(s)	760
SinI	GGWCC	1 cut(s)	733
SmaI	CCCGGG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	663, 738, 791, 997
SsiI	CCGC	5 cut(s)	29, 726, 743, 773, 785
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	3 cut(s)	123, 500, 807
StyD4I	CCNGG	5 cut(s)	361, 833, 875, 876, 885
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	3 cut(s)	577, 697, 854
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	419
TasI	AATT	4 cut(s)	663, 738, 791, 997
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	259, 689
Tru1I	TTAA	6 cut(s)	243, 504, 615, 750, 896, 996
Tru9I	TTAA	6 cut(s)	243, 504, 615, 750, 896, 996
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	5 cut(s)	373, 418, 474, 554, 805
TspMI	CCCGGG	1 cut(s)	876
TspRI	CASTG	1 cut(s)	580
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	996
XmaI	CCCGGG	1 cut(s)	876
XmaJI	CCTAGG	1 cut(s)	806
XspI	CTAG	3 cut(s)	123, 500, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.