Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

29829091 .. 29831766

Gene Structure 2676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1231900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGGAGCATATTACATTTGGTCGAGTTCAGATGCTCCGGTGCTTGCTGAGGCCAAGGTTGGTGCGGGCAAGCTTGTTCTTCAACCTCATGGTTTTGCTCTTCCTCACTATGCAGATTCCTCCAAACTGGGATATGTTCTTGAAGATTTTAATTAGCACTAATGGTGATGCAGGTGATGATGGATTAGTAGGAAAGGTATTCCCTAACACATCAGAGGAGGTGGTGGTTAAGGTTGAGAAAGGAGATGTGATACCAGTGCCAATTGGAACAGTCTCATGGTGGTTCAACAACGGAGATCGTTCTGATCAGGAGCTTGTTGTTGTTTTCTTGGGTGAAACTGCCGGAGCTCAAATTCCCGGTCAATTTTCGTACTTTTTTATTGCCGGAACGCTAAGTCTACTCGCAGGTTTCTCAACTGAATTTGTCAGCAAGTTCTTCAACATCACCGAGGACGAAGCTGATGACATCACCAAAAGCCAGACTGGGGTTTTGATCATCAAGCTAGGTCAAGATGAAAAGACCAAAATGCCCCTTCCCAATCAGAAACTCACCCACACACATGTTCACAACATCACTAGTAGTAAAACTACAGCTACATGGACTGAGAAGGAATTTCCTCCTCTTAAACAAGCTGGGTTAAGTGCGAACCTCACGAAACTCGAGGCCGACGCGATTAGCTCTCCAATTTACACACCTGATTCCACAGTCCAGGTGATTTATGTTGTTCGAGGGAGTGGCCGGATACAGATCGTGGGTGTTAACGGTCAACGTTTGTTGGACGCAGAGGTAACCGCCGGGCAACTGCTTGTGGTACCAAAGTTCTACATGGTTGCTAAACTCGCAGGACAAAATGGGTTGGAGTGTTTCGCTGTCATGACCAGTTCTCAGCCTGTCTTAGAAGACTTAGCTGGGAAGACATCAGCTTTGGGAGCATTATCACCGGAGGTACTACAAATAGCCCTTAATATAAGTCCAGGGCTAGAACAACTTATCAAGTCAAAGATTAGAAAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

340

Amino Acids

37.03

Weight (kDa)

5.68

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	62 - 153	4.5e-06	Cupin
Cupin_1	PF00190	196 - 326	5.7e-21	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	2 cut(s)	164, 398
Acc65I	GGTACC	1 cut(s)	814
AccB1I	GGYRCC	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	674
AciI	CCGC	2 cut(s)	67, 795
AclI	AACGTT	1 cut(s)	772
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	3 cut(s)	354, 422, 614
AfaI	GTAC	3 cut(s)	374, 816, 951
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	4 cut(s)	85, 145, 289, 442
AhlI	ACTAGT	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	711, 976
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	3 cut(s)	53, 666, 739
ApoI	RAATTY	3 cut(s)	354, 422, 614
ArsI	GACNNNNNNTTYG	6 cut(s)	346, 378, 475, 507, 910, 942
Asp718I	GGTACC	1 cut(s)	814
AsuC2I	CCSGG	2 cut(s)	360, 799
AsuHPI	GGTGA	8 cut(s)	179, 188, 347, 439, 463, 544, 727, 933
AvaI	CYCGRG	1 cut(s)	662
BaeI	ACNNNNGTAYC	2 cut(s)	806, 839
BanI	GGYRCC	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	352
BbsI	GAAGAC	2 cut(s)	909, 923
Bbv12I	GWGCWC	1 cut(s)	352
BbvCI	CCTCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	713, 978
BciVI	GTATCC	1 cut(s)	738
BclI	TGATCA	2 cut(s)	307, 495
BcnI	CCSGG	2 cut(s)	360, 799
BcoDI	GTCTC	1 cut(s)	280
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	3 cut(s)	506, 579, 983
BfmI	CTRYAG	1 cut(s)	591
BfuAI	ACCTGC	2 cut(s)	164, 398
BfuI	GTATCC	1 cut(s)	738
Bme1390I	CCNGG	4 cut(s)	360, 713, 799, 978
BmeT110I	CYCGRG	1 cut(s)	662
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	4 cut(s)	360, 713, 799, 978
BmrI	ACTGGG	2 cut(s)	139, 495
BmsI	GCATC	2 cut(s)	24, 160
BmuI	ACTGGG	2 cut(s)	139, 495
BpiI	GAAGAC	2 cut(s)	909, 923
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	360, 799
BsaBI	GATNNNNATC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	56, 450, 977
BsaWI	WCCGGW	2 cut(s)	39, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	4 cut(s)	134, 257, 490, 882
Bse8I	GATNNNNATC	1 cut(s)	749
BseBI	CCWGG	2 cut(s)	713, 978
BseDI	CCNNGG	3 cut(s)	56, 450, 977
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	3 cut(s)	41, 597, 902
BseNI	ACTGG	4 cut(s)	134, 257, 490, 882
BseRI	GAGGAG	3 cut(s)	20, 233, 612
BseYI	CCCAGC	2 cut(s)	635, 911
Bsh1236I	CGCG	1 cut(s)	674
BshFI	GGCC	3 cut(s)	55, 668, 741
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	7 cut(s)	40, 345, 360, 387, 742, 798, 944
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	55, 668, 741
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	298, 307, 495, 750
BspACI	CCGC	2 cut(s)	67, 795
BspANI	GGCC	3 cut(s)	55, 668, 741
BspCNI	CTCAG	3 cut(s)	42, 598, 901
BspFNI	CGCG	1 cut(s)	674
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	816
BspMI	ACCTGC	2 cut(s)	164, 398
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	814
BsrI	ACTGG	4 cut(s)	134, 257, 490, 882
BssECI	CCNNGG	3 cut(s)	56, 450, 977
BssMI	GATC	4 cut(s)	298, 307, 495, 750
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	713, 978
Bst4CI	ACNGT	3 cut(s)	274, 709, 767
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	47, 69, 73
BstDEI	CTNAG	6 cut(s)	50, 395, 606, 888, 898, 907
BstEII	GGTNACC	1 cut(s)	790
BstFNI	CGCG	1 cut(s)	674
BstKTI	GATC	4 cut(s)	301, 310, 498, 753
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	298, 307, 495, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	842, 932
BstNI	CCWGG	2 cut(s)	713, 978
BstNSI	RCATGY	1 cut(s)	566
BstPI	GGTNACC	1 cut(s)	790
BstSCI	CCNGG	4 cut(s)	358, 711, 797, 976
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	674
BstV2I	GAAGAC	2 cut(s)	909, 923
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	55, 668, 741
BtsIMutI	CAGTG	1 cut(s)	264
BveI	ACCTGC	2 cut(s)	164, 398
Cac8I	GCNNGC	3 cut(s)	47, 69, 73
CciI	TCATGA	1 cut(s)	876
CseI	GACGC	2 cut(s)	680, 791
Csp6I	GTAC	3 cut(s)	373, 815, 950
CviAII	CATG	6 cut(s)	91, 279, 563, 600, 829, 877
CviQI	GTAC	3 cut(s)	373, 815, 950
DdeI	CTNAG	6 cut(s)	50, 395, 606, 888, 898, 907
DpnI	GATC	4 cut(s)	300, 309, 497, 752
DpnII	GATC	4 cut(s)	298, 307, 495, 750
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	662
Eco91I	GGTNACC	1 cut(s)	790
EcoICRI	GAGCTC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	711, 976
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	6 cut(s)	94, 282, 566, 603, 832, 880
FatI	CATG	6 cut(s)	90, 278, 562, 599, 828, 876
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	2 cut(s)	307, 495
FblI	GTMKAC	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	352
FspBI	CTAG	3 cut(s)	506, 579, 983
GsaI	CCCAGC	2 cut(s)	639, 915
HaeIII	GGCC	3 cut(s)	55, 668, 741
HapII	CCGG	7 cut(s)	40, 345, 360, 387, 742, 798, 944
HgaI	GACGC	2 cut(s)	680, 791
Hin1II	CATG	6 cut(s)	94, 282, 566, 603, 832, 880
HincII	GTYRAC	2 cut(s)	763, 770
HindII	GTYRAC	2 cut(s)	763, 770
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	118, 701
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	7 cut(s)	40, 345, 360, 387, 742, 798, 944
HphI	GGTGA	8 cut(s)	179, 188, 347, 439, 463, 544, 727, 933
Hpy166II	GTNNAC	4 cut(s)	401, 568, 763, 770
Hpy188I	TCNGA	4 cut(s)	33, 217, 307, 546
Hpy188III	TCNNGA	5 cut(s)	142, 311, 512, 655, 877
Hpy8I	GTNNAC	4 cut(s)	401, 568, 763, 770
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	2 cut(s)	545, 604
HpyCH4III	ACNGT	3 cut(s)	274, 709, 767
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	2 cut(s)	115, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	842, 932
HpyF3I	CTNAG	6 cut(s)	50, 395, 606, 888, 898, 907
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	6 cut(s)	94, 282, 566, 603, 832, 880
KpnI	GGTACC	1 cut(s)	818
Ksp22I	TGATCA	2 cut(s)	307, 495
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	298, 307, 495, 750
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	5 cut(s)	7, 42, 313, 347, 932
LweI	GCATC	2 cut(s)	24, 160
MaeI	CTAG	3 cut(s)	506, 579, 983
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	4 cut(s)	300, 309, 497, 752
MboI	GATC	4 cut(s)	298, 307, 495, 750
MboII	GAAGA	6 cut(s)	73, 94, 157, 430, 914, 928
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	7 cut(s)	153, 264, 354, 365, 422, 614, 687
MmeI	TCCRAC	2 cut(s)	759, 840
MseI	TTAA	6 cut(s)	152, 231, 627, 641, 762, 966
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	7 cut(s)	40, 345, 360, 387, 742, 798, 944
MspR9I	CCNGG	4 cut(s)	360, 713, 799, 978
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	713, 978
MvnI	CGCG	1 cut(s)	674
MwoI	GCNNNNNNNGC	2 cut(s)	842, 932
NciI	CCSGG	2 cut(s)	360, 799
NdeII	GATC	4 cut(s)	298, 307, 495, 750
NlaIII	CATG	6 cut(s)	94, 282, 566, 603, 832, 880
NlaIV	GGNNCC	1 cut(s)	816
NspI	RCATGY	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	662
PagI	TCATGA	1 cut(s)	876
PaqCI	CACCTGC	1 cut(s)	164
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	118, 701
PscI	ACATGT	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	352
Psp1406I	AACGTT	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	711, 976
PspEI	GGTNACC	1 cut(s)	790
PspFI	CCCAGC	2 cut(s)	635, 911
PspGI	CCWGG	2 cut(s)	711, 976
PspN4I	GGNNCC	1 cut(s)	816
PspXI	VCTCGAGB	1 cut(s)	662
RsaI	GTAC	3 cut(s)	374, 816, 951
RsaNI	GTAC	3 cut(s)	373, 815, 950
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	352
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	6 cut(s)	152, 231, 627, 641, 762, 966
Sau3AI	GATC	4 cut(s)	298, 307, 495, 750
ScrFI	CCNGG	4 cut(s)	360, 713, 799, 978
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	24, 160
SfcI	CTRYAG	1 cut(s)	591
Sfr274I	CTCGAG	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	7 cut(s)	153, 264, 354, 365, 422, 614, 687
SsiI	CCGC	2 cut(s)	67, 795
SspMI	CTAG	3 cut(s)	506, 579, 983
SstI	GAGCTC	1 cut(s)	352
StyD4I	CCNGG	4 cut(s)	358, 711, 797, 976
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	3 cut(s)	274, 709, 767
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	3 cut(s)	25, 663, 730
TasI	AATT	7 cut(s)	153, 264, 354, 365, 422, 614, 687
TfiI	GAWTC	2 cut(s)	118, 701
Tru1I	TTAA	6 cut(s)	152, 231, 627, 641, 762, 966
Tru9I	TTAA	6 cut(s)	152, 231, 627, 641, 762, 966
TscAI	CASTG	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	3 cut(s)	354, 422, 614
XceI	RCATGY	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	3 cut(s)	506, 579, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.