Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

16268873 .. 16272159

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGGAGATAGATCTAACACCAAAGTTAGCAGCAGTAGAGTTCGAGGGAGATGGTGGAGGATATCAGACATGGTCAGCTCCAGCACTTGGCAAGGCCAAAGTTGGTGCCGGCAAGCTTGTTTTAAAGCCGAGTGGTTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGGTATGTTGTTCAAGGTGAGGATGGAGTAATTGGGATGGTTTTACCCAACACATCAGAGGAGGTGGTGTTGAAGCTTAAGAAAGGAGATGTGATTCCGGTACCAGTCGGAGCAGTCTCCTGGTGGTTCAACAATGGCGACTCACCCGATGACCTTGTTATCATTTTCTTGGGCGATACTACAAAGGCCTACACTCCTGGTCGGTTTACTTACTTCTTCATGGCAGGAACTCAAAGTCTTCTCGGAGGTTTCTCGACTGACTTCATTAGCAAGTCATTCAATATCAGCAAAGATGAAGCTGATGAGGTCACCAAAAACCAGTCAGGGGTTTTGGTAGTGAAGCTAGAACGTGGAATGACCATGCCTAAGCCCAACGAACTCTTCACCAAAAAACTTGTTCTTCAACTCACTGTTAGTGCCACTTTGACTGAGAAGGGGTTTCATTTTCTTAACCAAGTTGGGTTAAGTGCCAACCTCTTAAAACTTGAACCCTATGCAATTTCCTCTCCCACTTACACTACCGATTCTACGGTTCAAGTGATCTATGTTGTTGGAGGAGGCGGTCGAGTCCAAATAGCGGGTCTTAATGGCCAGCGTGTGTTGGATGCGGAAGTAACTGTGGGTCACTTAATCGTCGTGCCTAGGTTTTTCATGGTGGCGAAACTTGCTGGAGAAAAAGGAATGGAGTGTTTCTCTGTCATTACAAGTTCCCAGGCTGTCCTGGAAGACTTAACTGATAAGACATCAGTATTAAGGGCATTATCACCTGAGGTGTTACAAATATCCCTCAATATAAACCCACAGTTGCAGACTCTTCTCCAATCAAATATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

336

Amino Acids

36.01

Weight (kDa)

5.36

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	16 - 158	1.6e-14	Cupin
Cupin_1	PF00190	197 - 325	4e-18	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	107, 274
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	4 cut(s)	5, 735, 752, 782
AcoI	YGGCCR	1 cut(s)	763
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	4 cut(s)	89, 174, 499, 751
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	7 cut(s)	188, 247, 304, 454, 578, 662, 710
AjnI	CCWGG	4 cut(s)	293, 370, 885, 894
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	5 cut(s)	80, 118, 250, 473, 517
AluI	AGCT	5 cut(s)	80, 118, 250, 473, 517
Alw26I	GTCTC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	96, 360, 763
ApeKI	GCWGC	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
Asp718I	GGTACC	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	815
AsuHPI	GGTGA	5 cut(s)	203, 309, 475, 550, 930
AvrII	CCTAGG	1 cut(s)	815
AxyI	CCTNAGG	1 cut(s)	942
BalI	TGGCCA	1 cut(s)	765
BanI	GGYRCC	2 cut(s)	107, 274
BbsI	GAAGAC	2 cut(s)	404, 906
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	47, 191, 205
BciT130I	CCWGG	4 cut(s)	295, 372, 887, 896
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	3 cut(s)	518, 816, 1009
BfrI	CTTAAG	1 cut(s)	251
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	33
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	4 cut(s)	295, 372, 887, 896
BmiI	GGNNCC	2 cut(s)	109, 276
BmrFI	CCNGG	4 cut(s)	295, 372, 887, 896
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	404, 906
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpmI	CTGGAG	2 cut(s)	66, 864
Bpu10I	CCTNAGC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	815, 885
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 174, 499, 751
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	177, 278, 493
Bse21I	CCTNAGG	1 cut(s)	942
BseBI	CCWGG	4 cut(s)	295, 372, 887, 896
BseDI	CCNNGG	2 cut(s)	815, 885
BseGI	GGATG	3 cut(s)	202, 216, 784
BseLI	CCNNNNNNNGG	4 cut(s)	89, 174, 499, 751
BseMII	CTCAG	2 cut(s)	594, 933
BseNI	ACTGG	3 cut(s)	177, 278, 493
BseRI	GAGGAG	2 cut(s)	248, 744
BseXI	GCAGC	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	739
BshFI	GGCC	3 cut(s)	98, 362, 765
BshNI	GGYRCC	2 cut(s)	107, 274
BsiEI	CGRYCG	1 cut(s)	739
BsiSI	CCGG	2 cut(s)	111, 272
BslI	CCNNNNNNNGG	4 cut(s)	89, 174, 499, 751
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	98, 362, 765
Bsp143I	GATC	2 cut(s)	13, 714
BspACI	CCGC	4 cut(s)	5, 735, 752, 782
BspANI	GGCC	3 cut(s)	98, 362, 765
BspCNI	CTCAG	2 cut(s)	595, 934
BspLI	GGNNCC	2 cut(s)	109, 276
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	2 cut(s)	107, 274
BspTI	CTTAAG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	177, 278, 493
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	815, 885
BssMI	GATC	2 cut(s)	13, 714
BssT1I	CCWWGG	1 cut(s)	815
Bst2UI	CCWGG	4 cut(s)	295, 372, 887, 896
Bst4CI	ACNGT	4 cut(s)	586, 706, 793, 978
Bst6I	CTCTTC	3 cut(s)	150, 560, 993
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	112, 116, 767
BstDEI	CTNAG	3 cut(s)	540, 603, 942
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	3 cut(s)	202, 216, 784
BstKTI	GATC	2 cut(s)	16, 717
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	13, 714
BstMCI	CGRYCG	1 cut(s)	739
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 839
BstNI	CCWGG	4 cut(s)	295, 372, 887, 896
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	4 cut(s)	293, 370, 885, 894
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	2 cut(s)	404, 906
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	3 cut(s)	98, 362, 765
BtsCI	GGATG	3 cut(s)	202, 216, 784
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	3 cut(s)	112, 116, 767
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	4 cut(s)	72, 394, 535, 826
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	3 cut(s)	540, 603, 942
DpnI	GATC	2 cut(s)	15, 716
DpnII	GATC	2 cut(s)	13, 714
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	3 cut(s)	150, 560, 993
EarI	CTCTTC	3 cut(s)	150, 560, 993
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	815
Eco147I	AGGCCT	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	942
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	4 cut(s)	293, 370, 885, 894
EcoRV	GATATC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	815
ErhI	CCWWGG	1 cut(s)	815
FaeI	CATG	4 cut(s)	75, 397, 538, 829
FaiI	YATR	9 cut(s)	73, 156, 180, 395, 536, 669, 720, 827, 968
FatI	CATG	4 cut(s)	71, 393, 534, 825
FauI	CCCGC	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	209, 223, 791
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	518, 816, 1009
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	2 cut(s)	66, 864
HaeIII	GGCC	3 cut(s)	98, 362, 765
HapII	CCGG	2 cut(s)	111, 272
Hin1II	CATG	4 cut(s)	75, 397, 538, 829
HindIII	AAGCTT	2 cut(s)	116, 248
HinfI	GANTC	6 cut(s)	161, 268, 314, 698, 741, 985
HpaII	CCGG	2 cut(s)	111, 272
HphI	GGTGA	5 cut(s)	203, 309, 475, 550, 930
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	4 cut(s)	69, 232, 284, 419
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	1 cut(s)	381
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	4 cut(s)	586, 706, 793, 978
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	3 cut(s)	158, 671, 982
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 839
HpyF3I	CTNAG	3 cut(s)	540, 603, 942
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	4 cut(s)	75, 397, 538, 829
KpnI	GGTACC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	13, 714
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	85, 284
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	518, 816, 1009
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	4 cut(s)	481, 787, 797, 948
MalI	GATC	2 cut(s)	15, 716
MboI	GATC	2 cut(s)	13, 714
MboII	GAAGA	7 cut(s)	137, 382, 404, 547, 566, 911, 980
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	2 cut(s)	204, 672
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	3 cut(s)	308, 750, 979
MmeI	TCCRAC	3 cut(s)	262, 706, 756
Mox20I	TGGCCA	1 cut(s)	765
MroNI	GCCGGC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	765
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	111, 272
MspR9I	CCNGG	4 cut(s)	295, 372, 887, 896
MvaI	CCWGG	4 cut(s)	295, 372, 887, 896
MwoI	GCNNNNNNNGC	2 cut(s)	164, 839
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	2 cut(s)	13, 714
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	75, 397, 538, 829
NlaIV	GGNNCC	2 cut(s)	109, 276
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	481, 797
PceI	AGGCCT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	161, 268, 698
PflFI	GACNNNGTC	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	3 cut(s)	308, 749, 979
PpsI	GAGTC	3 cut(s)	308, 749, 979
Psp6I	CCWGG	4 cut(s)	293, 370, 885, 894
PspEI	GGTNACC	1 cut(s)	481
PspGI	CCWGG	4 cut(s)	293, 370, 885, 894
PspN4I	GGNNCC	2 cut(s)	109, 276
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	73
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	150
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	13, 714
SchI	GAGTC	3 cut(s)	308, 750, 979
ScrFI	CCNGG	4 cut(s)	295, 372, 887, 896
SfaNI	GCATC	1 cut(s)	769
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	204, 672
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	4 cut(s)	5, 735, 752, 782
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	3 cut(s)	518, 816, 1009
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	4 cut(s)	293, 370, 885, 894
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	4 cut(s)	586, 706, 793, 978
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	3 cut(s)	45, 428, 739
TasI	AATT	2 cut(s)	204, 672
TfiI	GAWTC	3 cut(s)	161, 268, 698
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	481, 797
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	2 cut(s)	481, 797
TspDTI	ATGAA	5 cut(s)	382, 427, 483, 605, 814
TspRI	CASTG	1 cut(s)	589
Tth111I	GACNNNGTC	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	3 cut(s)	518, 816, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.